mRNA_H-elongata_contig46475.11742.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: D7FMT8_ECTSI (Oxa1-like homolog, mitochondrial inner membrane insertase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT8_ECTSI) HSP 1 Score: 186 bits (471), Expect = 2.540e-55 Identity = 94/139 (67.63%), Postives = 106/139 (76.26%), Query Frame = 3
Query: 6 HPLGLMATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELAKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRP 422
H G+ ATPL+NLPVFI FVWSIR MLRD +VPGL+TG + SLMLP+I T TYT LE+ KMKGATGW+K+FQDGMQTF+ILMLPW STFPQGVFMYWIPS+VFQ QT MK + VR LLGLKPL P
Sbjct: 101 HLRGMFATPLVNLPVFITFVWSIRGMLRDGTVPGLDTGEA-------DTVHSLMLPIIGTLCTYTSLEIVKMKGATGWMKFFQDGMQTFIILMLPWVSTFPQGVFMYWIPSAVFQMGQTYTMKNNKVRELLGLKPLGLP 232
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A6H5JKU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU0_9PHAE) HSP 1 Score: 161 bits (407), Expect = 4.230e-45 Identity = 91/163 (55.83%), Postives = 105/163 (64.42%), Query Frame = 3
Query: 6 HPLGLMATPLINLPVFIMFVWSIRSMLRDSSVPGLNTG------------GTLWFVDLTVSDSSLMLPVISTALTYTGLELAKMKGATGWLKWFQDGMQTFMILMLP--WTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAPNTAA 452
H G+ ATPL+NLPVFI FVWSIR MLRD + PGL+TG G LWFVDLTV DSSLMLP+I T TYT LE+ KMKGATGW+K ++ + P +T QGVFMYWIPSS+FQ QT MK + VR LLGLKPL P +A T A
Sbjct: 134 HLRGMFATPLVNLPVFITFVWSIRGMLRDGTAPGLDTGEAVTVAPATKLGGILWFVDLTVPDSSLMLPIIGTLCTYTSLEIVKMKGATGWIK-----LERLAVTPSPRLFTRRHDQGVFMYWIPSSLFQMGQTYTMKNNKVRELLGLKPLGLPPREDAGATPA 291
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A7S4D5S6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5S6_HETAK) HSP 1 Score: 97.8 bits (242), Expect = 2.680e-22 Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 3
Query: 81 MLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELA--------KMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAP 431
+L+ +PGL+ GG LWF DL +D +L LP+ + LTY LEL + K G + + MQ ++I P+ P GVFMYWIPSS+F +CQ + ++++ +R +LGL P+ RP +P
Sbjct: 2 ILQGGQLPGLDCGGALWFSDLAAADPTLALPIAALGLTYANLELGFGRFRGHGEKKEDGGLPEKIKSMMQVYLIWSFPFIMQLPAGVFMYWIPSSLFGSCQVVLLRQNPIREMLGLPPIARPFSP 126
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A3L6UX27_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UX27_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 4.920e-21 Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = 3
Query: 6 HPLGLMATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLEL---AKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAPNTAA 452
HP+ +ATPL+ +P F++ +S R ++R V GL+TGG F +L +DS+ +LP ++ TY EL +K+K L+ ++ Q +L P+ PQG+F YW+ SS QT+A+++ +R LGLK + P A +P+ +A
Sbjct: 4 HPIQCVATPLVQIPTFLLMAYSTRELVRSGKVDGLDTGGVWLFQNLVEADSTFILPALAVGCTYLNFELMGTSKIK----LLQSLKNKFQYIPLLSFPFICQIPQGIFFYWLASSWCSFAQTMALRQPSIRRALGLKDV--PTATTSPSISA 149
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A0E9NH30_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NH30_SAICN) HSP 1 Score: 99.4 bits (246), Expect = 8.050e-21 Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 3
Query: 3 AHPLGLMATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELAKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPE 434
A+PL + P + +PV + F ++R+M D VPG TGGT WF+DLT +D + LP IS ALT + L + G K + Q +L++P+ + P VF YW+P++ F QT+ ++ +VR L + L +P AP+
Sbjct: 233 ANPLSPLLLPALQIPVMMSFFLALRAM-ADLPVPGFQTGGTHWFLDLTAADPYVALPCISAALTISSLRMGSEVGHNTNTKAMINVFQLLAVLVIPFVANLPAAVFAYWVPNAAFSVIQTVLLRNPNVRKKLHIPALPKPPAPK 375
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: K8YNK7_NANGC (Mitochondrial inner membrane oxa1l-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNK7_NANGC) HSP 1 Score: 92.8 bits (229), Expect = 9.690e-21 Identity = 51/113 (45.13%), Postives = 71/113 (62.83%), Query Frame = 3
Query: 12 LGLMATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLEL--AKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSV 344
L +A+P++ LPVF+ F + R M+ D VPGL GG WF DLT +D L+LPV+ TY LEL A++ + L++ +D +Q F+IL P +ST P GVF+YW SSV
Sbjct: 7 LAAIASPIVQLPVFVTFALANRRMI-DQQVPGLEEGGVAWFEDLTEADPLLILPVLCLGSTYLNLELGFARLHESQIILRFLKDNLQLFLILGAPVSSTLPAGVFIYWFTSSV 118
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A7S3H9D9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9D9_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.270e-20 Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 3
Query: 18 LMATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELA-KMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAP 440
L+ PL+N+ VF+ FV+S+R +L + L GGTLWFVDL D++ LP + LTY GLELA + +D Q+ +IL LP+ + P GVF YWIPSS+F Q+ +K + L + + PA +AP
Sbjct: 159 LIGYPLMNIGVFMTFVYSVRDLLLKTQDYSLLDGGTLWFVDLASKDATFGLPFAALGLTYLGLELAFRQNSQDNLFSRLKDYGQSGIILFLPFVTQLPAGVFCYWIPSSIFAITQSQILKGPYAQKLFNIPDIAPPAHMQAP 300
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A3P3YDN5_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YDN5_PLABS) HSP 1 Score: 97.1 bits (240), Expect = 1.550e-20 Identity = 55/146 (37.67%), Postives = 84/146 (57.53%), Query Frame = 3
Query: 30 PLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELAKMKGATG------WLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLG--LKPLRRPAAPEAPN 443
P++ LP FI+F+ S+R+ L P + TGG WF +L++ DS+ +LPV++ +L+Y +E+ + A + WFQ GM IL LP+ S P G+FMYWIP+S++ QT + +R LG ++PLR P A N
Sbjct: 170 PVVQLPAFIVFISSLRTCLTTD--PAMATGGAFWFTNLSMRDSTFVLPVVAISLSYVAVEMVLRRHANRDHPVVKVVGWFQTGM----ILSLPFVSLIPSGIFMYWIPTSLWTIAQTHLLHTPAIRQWLGYPVEPLRTPTVVAATN 309
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: A0A024TNQ9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNQ9_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 4.890e-20 Identity = 55/161 (34.16%), Postives = 86/161 (53.42%), Query Frame = 3
Query: 6 HPLGLMATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLELAKMKGATGWLKWFQ---DGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAPNTAAAGQGLSSKP 479
HP+ +ATPL+ +P F++ +S R ++R V GL+TGG F +L +D +L+LP ++ TY EL T +K Q D Q +L P+ PQG+F YW+ SS QT+A+++ +R LGL+ + + AP ++A L S P
Sbjct: 155 HPVKCVATPLLQIPTFLLMAYSTRELVRSGRVEGLDTGGVWMFQNLVEADGTLILPALAVGCTYLNFELM----GTSKVKLIQALKDKFQYIPLLSFPFICQMPQGIFFYWLASSWCSFAQTMALRQPSIRRALGLRDITASSLAAAPVPSSANSLLPSAP 311
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Match: W4G8S7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8S7_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 9.820e-20 Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = 3
Query: 6 HPLGLMATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLPVISTALTYTGLEL---AKMKGATGWLKWFQDGMQTFMILMLPWTSTFPQGVFMYWIPSSVFQTCQTLAMKRDDVRVLLGLKPLRRPAAPEAPNTAA 452
HP+ +ATPL+ +P F++ +S R ++R V GL+TGG F +L +DS+ +LP ++ TY EL +K+K L+ ++ Q +L P+ PQG+F YW+ SS QT+A+++ +R LGLK + P A +P+ +A
Sbjct: 158 HPIQCVATPLVQIPTFLLMAYSTRELVRSGKVDGLDTGGVWLFQNLVEADSTFILPALAVGCTYLNFELMGTSKIK----LLQSLKNKFQYIPLLSFPFICQIPQGIFFYWLASSWCSFAQTMALRQPSIRRALGLKDV--PTATASPSISA 303 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46475.11742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46475.11742.1 >prot_H-elongata_contig46475.11742.1 ID=prot_H-elongata_contig46475.11742.1|Name=mRNA_H-elongata_contig46475.11742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp MATPLINLPVFIMFVWSIRSMLRDSSVPGLNTGGTLWFVDLTVSDSSLMLback to top mRNA from alignment at H-elongata_contig46475:256..2581+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig46475.11742.1 ID=mRNA_H-elongata_contig46475.11742.1|Name=mRNA_H-elongata_contig46475.11742.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2326bp|location=Sequence derived from alignment at H-elongata_contig46475:256..2581+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig46475:256..2581+ >mRNA_H-elongata_contig46475.11742.1 ID=mRNA_H-elongata_contig46475.11742.1|Name=mRNA_H-elongata_contig46475.11742.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig46475:256..2581+ (Himanthalia elongata Himel1 dioecious)back to top |