mRNA_H-elongata_contig46474.11741.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46474.11741.1
Unique NamemRNA_H-elongata_contig46474.11741.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46474.11741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46474contigH-elongata_contig46474:1940..3222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size243
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46474.11741.1prot_H-elongata_contig46474.11741.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46474 1940..3222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.663051-CDS-H-elongata_contig46474:1939..20361622930769.663051-CDS-H-elongata_contig46474:1939..2036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 1940..2036 +
1691679562.0374925-CDS-H-elongata_contig46474:1939..20361691679562.0374925-CDS-H-elongata_contig46474:1939..2036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 1940..2036 +
1622930769.6772106-CDS-H-elongata_contig46474:2377..24611622930769.6772106-CDS-H-elongata_contig46474:2377..2461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 2378..2461 +
1691679562.0544713-CDS-H-elongata_contig46474:2377..24611691679562.0544713-CDS-H-elongata_contig46474:2377..2461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 2378..2461 +
1622930769.7108812-CDS-H-elongata_contig46474:3160..32221622930769.7108812-CDS-H-elongata_contig46474:3160..3222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 3161..3222 +
1691679562.0697825-CDS-H-elongata_contig46474:3160..32221691679562.0697825-CDS-H-elongata_contig46474:3160..3222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46474 3161..3222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46474.11741.1

>prot_H-elongata_contig46474.11741.1 ID=prot_H-elongata_contig46474.11741.1|Name=mRNA_H-elongata_contig46474.11741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
GHAIFSTTDRIADRATGTLAHCATSFDAYNTTGYVSLRATGSISRIHAHR
STSGGSFDDTGYAIGSITHRATSNGSYNTTG
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mRNA from alignment at H-elongata_contig46474:1940..3222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46474.11741.1 ID=mRNA_H-elongata_contig46474.11741.1|Name=mRNA_H-elongata_contig46474.11741.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1283bp|location=Sequence derived from alignment at H-elongata_contig46474:1940..3222+ (Himanthalia elongata Himel1 dioecious)
GGTCACGCCATCTTCAGCACCACCGATAGGATCGCCGACAGAGCCACCGG
CACCCTCGCCCACTGTGCCACCAGCTTTGACGCCTACAACACCACCGGCA
AGTCCGCTCACTGCGCCGCTGGATCTGCTAAAGCACCGAAATCACCGCCT
CCGTCGCAGCCAGTAATACCTACCATGCAATCGTCAAAACTGTCCGTTGC
GTCATAGGTCACGCAACCATTATTACCACCGGTAGTATCCTCCACTGAGC
GACTGCTAGGTTTATCCACGGCACCGTATATATCGCTGACCTCAGCAACG
CCGGCTGCACCACCTACGACGTTGTTGGCTTCTCCGCGCTTGACGCAGAC
GAATTTTTCACGCACTGCGCCGCATGCAACCATACTTTCTATGCCACTCG
TAAACGATTAACCGTTAAATCTTCCCCCTGCGCAGCAGGTTACGTCTCCC
TTAGAGCAACCGGTAGCATCTCCCGCATCCACGCCCACCGCTCCACCAGT
GGCGGTTCCTTCGACGACACCGGTAAGTCTGCTTACAGCTCTTCCTGCGA
TGTCTCCTATCACAGCTGTGCGATCTGCAGCTCCACCAATTTCCCAACTT
ACAACACTTCCAGTATCCATGTCCACGCCACCAGCGTCTCCGTCTCCGAC
TCCACCTATAAACACCACACCTGTGCCGCCGATGACGTCTCTCACCATAA
CGTAAGCGTGCCAACTGTGCCGCCTGTAGGCACGTCAGCTTACCCGACGG
TGACGTCTCCCACCACAGCGACGTCAGCTGCGCCATCTACGTCCCCAAAA
GTTTCCCAATCTTTAATGCCACCAGTATTCTTGCCCACCACCCCATCAGT
TACGCCGCCTACGATGTAATCTCGTAGCGTATCAACCTCGCCGCCGGTAA
CTTCTCCGACCACAGCTTCACTTCCAACGCTACGAATTTCCCAACTCACC
ACGCCACCGGTATCCACGCCCACCGCGCCACCGGTAACCCCGCTTACGAC
GCAGCCTGTAAACGCGCCAAATTCGCCTCCTGTGACTTGTGACGTCTCCC
ACGACAGCAAGACCAGCTGTATCACTTACAACACCACCTATTTCTCAACC
TACGACACCACCGGGTTCCCCACCTTTGTCACAAACAGTTTATGTACCTA
CTTCGCCGCCGGCAACGACACCCTCGTCGCCGCCCACCCCCCCCTCACCG
TTAAATTCGTCCGCTCCGCAGGTTACGCCATCGGTAGCATCACCCACAGA
GCCACCAGCAACGGCTCCTACAACACCACCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig46474:1940..3222+

>mRNA_H-elongata_contig46474.11741.1 ID=mRNA_H-elongata_contig46474.11741.1|Name=mRNA_H-elongata_contig46474.11741.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig46474:1940..3222+ (Himanthalia elongata Himel1 dioecious)
GGTCACGCCATCTTCAGCACCACCGATAGGATCGCCGACAGAGCCACCGG
CACCCTCGCCCACTGTGCCACCAGCTTTGACGCCTACAACACCACCGGGT
CACGCCATCTTCAGCACCACCGATAGGATCGCCGACAGAGCCACCGGCAC
CCTCGCCCACTGTGCCACCAGCTTTGACGCCTACAACACCACCGGTTACG
TCTCCCTTAGAGCAACCGGTAGCATCTCCCGCATCCACGCCCACCGCTCC
ACCAGTGGCGGTTCCTTCGACGACACCGGTTACGTCTCCCTTAGAGCAAC
CGGTAGCATCTCCCGCATCCACGCCCACCGCTCCACCAGTGGCGGTTCCT
TCGACGACACCGGTTACGCCATCGGTAGCATCACCCACAGAGCCACCAGC
AACGGCTCCTACAACACCACCGGTGTTACGCCATCGGTAGCATCACCCAC
AGAGCCACCAGCAACGGCTCCTACAACACCACCGGT
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