mRNA_H-elongata_contig46437.11737.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46437.11737.1
Unique NamemRNA_H-elongata_contig46437.11737.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Match: D7FZF2_ECTSI (Autophagy-related protein 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF2_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.770e-46
Identity = 162/332 (48.80%), Postives = 176/332 (53.01%), Query Frame = 1 
Query:    1 RYGDENYAAPSTAPVGGENAGVGREGRPRRRA-DTTAQGKMEKSFLSFRTNYPDWQPGAAGQEMIDRLTGFQLQCLRKDAEMMAAAGSTSATVAAGSTRRTGPGVGVGMANPGAVGAHRWGQSPDSVHTLR---GVEEAVGATGGEGGRAHIRRAGVREAAVLAPGDNDXXXXXXXXTHHRDRLSHQEGGADGRVSPSAVGLAPSNVQLGLLNSVSPSMLLGPSAGAWLGATGGIGSGGIASGXXXXXXXXM----------SAAASPSFVQTSQLAPLLLSQMN-PHG-SF--GWGSPQF-GRATF-GAPAPPPSAITGQGQEHNFYWLEK 936
            RYGDE+YAAPS A +    A VG   R RRR  DTTAQGKMEKSFL+FR +YPDWQPG AGQEMIDRL GFQLQCLRKDAE  AAA +                         A GAH WGQS   +H  R   GV                             G  D              L    GG  GR S S  G  PS++QLGLLNSVSPSMLLGP AGAWLG       GG    XXXXXXXX           ++ A+PSFVQTSQLAP LLSQ+  PHG SF  G G+P F GR T  GAPA  P      GQE NFYWLE+
Sbjct:  523 RYGDEDYAAPSAASM----AEVGPAERARRRRPDTTAQGKMEKSFLNFRAHYPDWQPGPAGQEMIDRLAGFQLQCLRKDAEAAAAANTXXXXXXXXXXXXX------XXXXXXAGGAH-WGQS--HLHQERQPVGVXXXXXXXXXXXXXXXXXXXXXXTPGASVLGHLDRDEEVGPDGGVTVNLGPFAGGG-GRAS-SPTGAVPSSLQLGLLNSVSPSMLLGPGAGAWLG-------GGTXXXXXXXXXXXXXXXXXXGVFGASMATPSFVQTSQLAPFLLSQIGGPHGGSFAGGAGAPSFLGRTTSNGAPAAGPV-----GQEQNFYWLER 827
[Close]
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Match: A0A6H5K9U8_9PHAE (Autophagy-related protein 9 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U8_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 7.310e-33
Identity = 143/366 (39.07%), Postives = 158/366 (43.17%), Query Frame = 1 
Query:    1 RYGDENYAAPSTAPVGGENAGVGREGRPRRRA-DTTAQGKMEKSFLSFR--TNYPDWQPGAAGQEMIDRLTGFQLQCLRKDAEMMAAAGSTSATVAAGSTRRTGPGVGVGMANPGAVGAHRWGQSPDSVHTLRGVEEAVGATGGEGGRAHIRRAGVRE--------AAVLAPGDNDXXXXXXXXT----HHRD--------------------------------------------------------------RLSHQEGGAD----------GRVSPSAVGLAPSNVQLGLLNSVSPSMLLGPSAGAWLGATGGIGSGGIASGXXXXXXXXMSAAASPSFVQTSQLAPLLLSQMN-PHG-SFG 831
            RYGDE+YAAPS A +    A VG   R RRR  DTTAQGKMEKSFL+FR  T+YPDWQPG AGQEMIDRL GFQLQCLRKDAE  AAA                             G  +WGQS      L    + VG   G+G                    A+VL   D D             H RD                                                                    G AD          G  +PS  G  PS++QLGLLNSVSPSMLLGP AGAWLG  GG         XXXXX    ++ A+PSFVQTSQLAP LLSQ+  PHG SFG
Sbjct:  476 RYGDEDYAAPSAASM----AEVGPAERARRRRPDTTAQGKMEKSFLNFRHVTHYPDWQPGPAGQEMIDRLAGFQLQCLRKDAEAAAAANXXXXXXXXXXXXXX-------XXXXXXXGGAQWGQSH-----LHQNHQPVGVCVGQGXXXXXXXXXXXXXXXXXTPGASVLGHLDRDEEVGPDGGVTAPEHGRDGXXXXXXSNXXXXXXXXXXXXXXXXXXXGXXXXXXPCEGEVGXXXXXXXXXXXXXXXXXXXXXXXXXXGRADQANLGPLAGGGGRAPSPTGAVPSSLQLGLLNSVSPSMLLGPGAGAWLG--GGTXXXXXXXXXXXXXGVFGASMATPSFVQTSQLAPFLLSQIGGPHGGSFG 823
[Close]
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Match: A0A836CNL2_9STRA (Autophagy protein Apg9-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.080e-7
Identity = 39/92 (42.39%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:    1 RYGDENYAAPST------------------APVGGENA-GVGREGRPRRRADTTAQGKMEKSFLSFRTNYPDWQPGAAGQEMIDRLTGFQLQ 219
            R+GDE+Y APS                   A V    A G G  G  +   D T QGKMEKSFL+F  NYP+W+P AAG+EM++ L  FQ +
Sbjct:  836 RHGDEDYGAPSAVNPSAXXXXXXXXXXXXFAGVSASRASGWGAHGLGK---DVTEQGKMEKSFLNFTANYPEWEPDAAGKEMLNALEHFQTE 924
[Close]
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Match: A0A7S2D6I8_9STRA (Autophagy-related protein 9 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6I8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.620e-7
Identity = 34/77 (44.16%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:    1 RYGDENYAAPSTAPVGGENAGVGREGRPRRRADTTAQGKMEKSFLSFRTNYPDWQPGAAGQEMIDRLTGFQLQCLRK 231
            RYGDE YAAP          G   +GR       T QGKMEKSFL+F+ N+PDW  G  G   I ++  FQ Q L +
Sbjct:   68 RYGDERYAAPKD--------GSEVDGR-------TEQGKMEKSFLNFKINHPDWDCGEQGNTFIAKICAFQEQQLEE 129
[Close]
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Match: A0A7S2STW1_9STRA (Autophagy-related protein 9 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STW1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.800e-6
Identity = 31/78 (39.74%), Postives = 40/78 (51.28%), Query Frame = 1 
Query:    1 RYGDENYAAPSTAPVGGENAGVGREGRPRRRADTTAQGKMEKSFLSFRTNYPDWQPGAAGQEMIDRLTGFQLQCLRKD 234
            +YGDE Y AP+    G E                T QGK+EKSFL+F+ N+P+W  G  G + I+RL  FQ   L  D
Sbjct:  287 KYGDERYGAPNVRTDGEE----------------TEQGKLEKSFLNFKINHPEWDCGEEGNQFINRLVNFQEDHLHHD 348
[Close]
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Match: A0A2G5EFU0_AQUCA (Autophagy-related protein 9 n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5EFU0_AQUCA)

HSP 1 Score: 59.7 bits (143), Expect = 3.190e-6
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:    1 RYGDENYAAPSTAPVGGENAGVGREGRPRRRADTTAQGKMEKSFLSFRTNYPDWQPGAAGQEMIDRLTGFQLQCLR 228
            R+G+  Y +P  AP                R+  ++QGKMEKSFLSF+++YP W+P A G+E +  L  F+ Q L+
Sbjct:  560 RHGNSKYGSPHNAP----------------RSRRSSQGKMEKSFLSFQSSYPSWEPNAQGKEFLSNLRNFREQKLQ 619
[Close]
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Match: A0A6A2XKI7_HIBSY (Autophagy-related protein 9 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XKI7_HIBSY)

HSP 1 Score: 59.3 bits (142), Expect = 3.610e-6
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    4 YGDENYAAPSTAPVGGENAGVGREGRPRRRADTTAQGKMEKSFLSFRTNYPDWQPGAAGQEMIDRLTGFQ 213
            +G+ENY +P  AP                RA  ++QGKMEKSFLSF+++YP W+P A G++ +  +  F+
Sbjct:  243 HGNENYGSPHNAP----------------RAQRSSQGKMEKSFLSFQSSYPSWEPDARGKQFLSNIRTFR 296
[Close]
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Match: A0A7N2ML40_QUELO (Autophagy-related protein 9 n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2ML40_QUELO)

HSP 1 Score: 59.3 bits (142), Expect = 4.250e-6
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:    1 RYGDENYAAPSTAPVGGENAGVGREGRPRRRADTTAQGKMEKSFLSFRTNYPDWQPGAAGQEMIDRLTGFQLQCLR 228
            ++G+ NY +P  AP                R + ++QGKMEKSFLSF+++YP W+P A G + +  L  F+ Q L+
Sbjct:  563 KHGNSNYGSPYNAP----------------RTERSSQGKMEKSFLSFQSSYPSWEPNALGNQFLSNLRTFREQRLQ 622
[Close]
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Match: A0A1U8ICJ8_GOSHI (Autophagy-related protein 9 n=39 Tax=Gossypium TaxID=3633 RepID=A0A1U8ICJ8_GOSHI)

HSP 1 Score: 59.3 bits (142), Expect = 4.260e-6
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:    4 YGDENYAAPSTAPVGGENAGVGREGRPRRRADTTAQGKMEKSFLSFRTNYPDWQPGAAGQEMIDRLTGFQLQCLR 228
            +G+ NY +PS AP                RA  ++QGKMEKSFLSF+++YP W+P + G++ +  +  F+ Q L+
Sbjct:  563 HGNGNYGSPSNAP----------------RAQRSSQGKMEKSFLSFKSSYPSWEPDSQGKQFLSNIRTFREQKLQ 621
[Close]
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Match: A0A5N6QES4_9ROSI (Autophagy-related protein 9 n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QES4_9ROSI)

HSP 1 Score: 59.3 bits (142), Expect = 4.270e-6
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:    1 RYGDENYAAPSTAPVGGENAGVGREGRPRRRADTTAQGKMEKSFLSFRTNYPDWQPGAAGQEMIDRLTGFQLQCLR 228
            ++G+ NY +P +AP                R + ++QGKMEKSFLSF+++YP W+P   G++ I  L  F+ Q L+
Sbjct:  562 KHGNSNYGSPHSAP----------------RIERSSQGKMEKSFLSFQSSYPSWEPNTQGRQFISNLRTFREQNLQ 621
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46437.11737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZF2_ECTSI3.770e-4648.80Autophagy-related protein 9 n=1 Tax=Ectocarpus sil... [more]
A0A6H5K9U8_9PHAE7.310e-3339.07Autophagy-related protein 9 n=1 Tax=Ectocarpus sp.... [more]
A0A836CNL2_9STRA1.080e-742.39Autophagy protein Apg9-domain-containing protein n... [more]
A0A7S2D6I8_9STRA6.620e-744.16Autophagy-related protein 9 (Fragment) n=1 Tax=Flo... [more]
A0A7S2STW1_9STRA1.800e-639.74Autophagy-related protein 9 (Fragment) n=1 Tax=Rhi... [more]
A0A2G5EFU0_AQUCA3.190e-638.16Autophagy-related protein 9 n=2 Tax=Thalictroideae... [more]
A0A6A2XKI7_HIBSY3.610e-638.57Autophagy-related protein 9 n=1 Tax=Hibiscus syria... [more]
A0A7N2ML40_QUELO4.250e-636.84Autophagy-related protein 9 n=3 Tax=Fagaceae TaxID... [more]
A0A1U8ICJ8_GOSHI4.260e-637.33Autophagy-related protein 9 n=39 Tax=Gossypium Tax... [more]
A0A5N6QES4_9ROSI4.270e-636.84Autophagy-related protein 9 n=1 Tax=Carpinus fangi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46437contigH-elongata_contig46437:160..4140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue9.9e-44
Seed eggNOG ortholog2880.D7FZF2
Preferred nameATG9A
KEGG koko:K02349,ko:K17907,ko:K19672
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04137,ko04138,ko04140,map04136,map04137,map04138,map04140
GOsGO:0000003,GO:0000045,GO:0000139,GO:0000272,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000407,GO:0000421,GO:0000422,GO:0001817,GO:0001818,GO:0001894,GO:0001932,GO:0001934,GO:0002165,GO:0002376,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006914,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007552,GO:0007586,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009251,GO:0009267,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009628,GO:0009653,GO:0009791,GO:0009886,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010498,GO:0010562,GO:0010604,GO:0010623,GO:0010646,GO:0010647,GO:0010648,GO:0010669,GO:0012501,GO:0012505,GO:0012506,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016052,GO:0016192,GO:0016236,GO:0016237,GO:0019220,GO:0019222,GO:0019538,GO:0019941,GO:0019954,GO:0022411,GO:0022600,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030054,GO:0030154,GO:0030163,GO:0030277,GO:0030587,GO:0030659,GO:0031090,GO:0031152,GO:0031153,GO:0031224,GO:0031288,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032006,GO:0032007,GO:0032258,GO:0032268,GO:0032270,GO:0032479,GO:0032480,GO:0032501,GO:0032502,GO:0032588,GO:0032648,GO:0032688,GO:0032872,GO:0032874,GO:0033036,GO:0033365,GO:0033554,GO:0034067,GO:0034497,GO:0034599,GO:0034613,GO:0034727,GO:0035069,GO:0035096,GO:0040011,GO:0042175,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042331,GO:0042592,GO:0042594,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043410,GO:0043632,GO:0043933,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044257,GO:0044260,GO:0044262,GO:0044264,GO:0044265,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0044804,GO:0044805,GO:0045087,GO:0045937,GO:0046328,GO:0046330,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048707,GO:0048856,GO:0048869,GO:0048871,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0055037,GO:0055114,GO:0060033,GO:0060249,GO:0060255,GO:0060729,GO:0061709,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070302,GO:0070304,GO:0070727,GO:0070887,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0080090,GO:0080134,GO:0080135,GO:0090382,GO:0090702,GO:0097708,GO:0098542,GO:0098588,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099120,GO:1901564,GO:1901565,GO:1901575,GO:1902531,GO:1902532,GO:1902533,GO:1903008,GO:1905037
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGsKOG2173@1,KOG2173@2759
EC2.7.7.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029,ko03036,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size936
Cds size936
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46437.11737.1prot_H-elongata_contig46437.11737.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46437 160..4140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.1924496-CDS-H-elongata_contig46437:159..2661622930769.1924496-CDS-H-elongata_contig46437:159..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 160..266 -
1691679561.8576539-CDS-H-elongata_contig46437:159..2661691679561.8576539-CDS-H-elongata_contig46437:159..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 160..266 -
1622930769.207428-CDS-H-elongata_contig46437:710..9881622930769.207428-CDS-H-elongata_contig46437:710..988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 711..988 -
1691679561.8733048-CDS-H-elongata_contig46437:710..9881691679561.8733048-CDS-H-elongata_contig46437:710..988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 711..988 -
1622930769.2191849-CDS-H-elongata_contig46437:1054..12351622930769.2191849-CDS-H-elongata_contig46437:1054..1235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 1055..1235 -
1691679561.8813498-CDS-H-elongata_contig46437:1054..12351691679561.8813498-CDS-H-elongata_contig46437:1054..1235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 1055..1235 -
1622930769.233085-CDS-H-elongata_contig46437:1930..21571622930769.233085-CDS-H-elongata_contig46437:1930..2157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 1931..2157 -
1691679561.8891158-CDS-H-elongata_contig46437:1930..21571691679561.8891158-CDS-H-elongata_contig46437:1930..2157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 1931..2157 -
1622930769.2513895-CDS-H-elongata_contig46437:3958..40501622930769.2513895-CDS-H-elongata_contig46437:3958..4050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 3959..4050 -
1691679561.8966944-CDS-H-elongata_contig46437:3958..40501691679561.8966944-CDS-H-elongata_contig46437:3958..4050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 3959..4050 -
1622930769.2659194-CDS-H-elongata_contig46437:4089..41401622930769.2659194-CDS-H-elongata_contig46437:4089..4140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 4090..4140 -
1691679561.9043725-CDS-H-elongata_contig46437:4089..41401691679561.9043725-CDS-H-elongata_contig46437:4089..4140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46437 4090..4140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46437.11737.1

>prot_H-elongata_contig46437.11737.1 ID=prot_H-elongata_contig46437.11737.1|Name=mRNA_H-elongata_contig46437.11737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=312bp
RYGDENYAAPSTAPVGGENAGVGREGRPRRRADTTAQGKMEKSFLSFRTN
YPDWQPGAAGQEMIDRLTGFQLQCLRKDAEMMAAAGSTSATVAAGSTRRT
GPGVGVGMANPGAVGAHRWGQSPDSVHTLRGVEEAVGATGGEGGRAHIRR
AGVREAAVLAPGDNDDDDEQSDDTHHRDRLSHQEGGADGRVSPSAVGLAP
SNVQLGLLNSVSPSMLLGPSAGAWLGATGGIGSGGIASGGGGGGDIVMSA
AASPSFVQTSQLAPLLLSQMNPHGSFGWGSPQFGRATFGAPAPPPSAITG
QGQEHNFYWLEK
back to top

mRNA from alignment at H-elongata_contig46437:160..4140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46437.11737.1 ID=mRNA_H-elongata_contig46437.11737.1|Name=mRNA_H-elongata_contig46437.11737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3981bp|location=Sequence derived from alignment at H-elongata_contig46437:160..4140- (Himanthalia elongata Himel1 dioecious)
AGGTACGGGGATGAGAACTACGCAGCCCCCTCTACGGCGCCGGTGGGAGG
GGTGCCCAGGTTGGCAGCAAGGGAGGCGGTGGAGCAGGAGGAAAACGCTG
GAGTTGGGCGGGAGGGGCGGCCTCGCCGAAGGGCCGACACCACCGCCCAG
GGCAAAATGGAGAAATCGTTCCTAAGCTTCAGGTGCTGGTTGTATTGTTG
TGCGCCTTCCCCCTCCCCCCCCCTTATGCCAACCGACCGACTGGTGTGGT
GTGGTACGGTATTCCGCACTCGCGATAGGTAGGTTAGCCCGCTGAACCCC
CTTCAGGGTTTGTGTTCGTGTTACTCCAAAGACGCGTGAGGTCAAAGGTG
GACAACACAGGCGCCGAAGGTAGAGTTAACTCGGAGTTAACTCCGAGTCA
ACTGACTCTCTCCAATGACTCGGAGTACCACAGAGTACCAAAATCCCTAA
AATGCCAATGACTCGATTTACCACAGAGTACCAAAATCCCCAAAATGGCA
ATAACTCGGAGTACCCAGAGAGTACCAAAATCCCAGAGATGCTAATGACT
CGGAGTACCACAGAGTACCAAAATCCCAGAGATGCCAATAACTCGGAGTA
CCACAGAGTACCAAAACCCCCAGAGATGCCAATGACTCGGAGTACACAGA
GTACCAAAATCCCAGAGGTGTGAATGACTCGGAGTACCACAGAGTACCAA
AATCCCAGAGGTGCGAATGACTCGGAGTACCACAGAGTACCAAAATCCCG
TAAGTGAAAGTCGGAATAACTTCGGAATAACTCGGCAGCACTCCATGTAC
AAGTGCTACTGCTGTTCCGATGTTCCAAAAGGAATTGAAATCGGAACACA
CACGAGCGAAATGGGCCCAGAAATTCCGGCAAATGGCGCTGATGTGGAGG
ATGTGGAGGGTGCCGGTTAAACCTCGGGCGCGGAGAATGCATGATTACGT
TGGATGGGTTGGGCTTACCGTGCTGTTATGGTTTCTATTTATTGCATCTG
CATGTATGTCGTTGTTTTGATTTTTTGTCGACTATTGTAGATTGCTTTTT
TCGAGCTATTTTTGGTGTGTATTTTGTTTCGGATTTTCGCTTTTGCTGAC
TCCCAGTACATACAGTAGTCGGGTATCGGATGTATTCGATCGGATTTTCG
TGATCTACGATACATTGGGGGAAAAAGAAAAACATCGGGGACGGGTTAGT
TGTGGTGGTGCTGAGTTGAGCTCACCGTGATCTGCAGGTGAATACGGAAG
CCGTATCGTAGTGCTGTGCTGACAGCTGACGTGCAGCACTGGAAGTCATT
GTGGCAAAAATGACTCTGGGTACTCGGAGTACTACCAGTAACAGAGCACC
AGAGTCCGAATATCCCAGAGGTGCCAATGAATCGATGTACCCAGAGTACC
AAGATCCTAGAGGTGCCATTGACTCGGAGTACCCAGAGTACCAAAATCCC
AGAGGTGCCAATGACTTGGAGTACCCAGAGTACCAAAATCCCAGATGTGC
CAATGACTCGATGTACCCAGAGTACCAAATCCCTGAGGTGCCAATGACTT
GGAGTACCCAGAGTACCAAAATCCCAGAGGTGCCAATTACTCGGAGTACC
CAGAGTACCAAAATCCCAGAGATGCCAATGACTCGGAGTATCCAGAGTAC
CAAAATCCCAGAGGTGCAAATGACTCGGAGTACCACATTCCCGACCCTTC
CAAAATGACTCGACTCTACTCTAACTCGACCTTCGGCGCCTGTGTCGGAC
AACTCCAAGAACGAACGATTATGATTCTGCGTGTTTTGAGCGCTCTTCTC
TCCCCCCCCCTGTTCCACCTCAGCCCCCCTCTTCTCCTTTTCCAAGCCAC
AATCACACTTTCCCCCGTACAGTATAGTATAGTACAGTAGCCTCGAAGTG
CTCCGCGCCCGCAGCTCGACCACCTGTCCTTTTTTTCATCCTTCCATCCG
TTCATCTATCTACTTCCATTTCCGCTTTTCCAGGACGAACTACCCTGACT
GGCAACCGGGGGCCGCGGGGCAAGAAATGATCGACCGTCTCACCGGGTTC
CAGCTGCAGTGCCTGCGGAAGGATGCCGAGATGATGGCCGCCGCTGGTAG
CACATCGGCGACCGTCGCGGCTGGTTCAACTCGAAGGACCGGCCCTGGAG
TAGGTGTTGGGATGGCGAACCCCGGAGCGGTGGGAGCACATCGCTGGGGA
CAGAGCCCCGGTAAGCATCGGCATGATTAATACCAGCTTCAGCCACTCGG
TCGAGACGAGCTTCCGTTGTCTCTTGTTTCTTTTCTACTACAGTCGTAAT
CTACAACTCGCGTAGCGTTCGTGTCTCTTTTTGTTGCTGTTGATATTTAT
TGTACATTCACCCAGCTTTGTACTGTACTGTGTAGTGTATACCAGTAGCT
TCCGCATTTTCTTCGCGTAGCTGAACGTCCACAGTTTTTCTGATGCTGAG
GGGAGGGTTGTGTGGAAAGAGTTGACTCTGTGCTCTGTCCTATGTACTCT
TCCCTCTCCGTGTCAATTGACCGTGGCCTTTTCCGTTATGTTGTATACAA
TTTCGTTTTTTTTCCGTTGTATTCCGTTCCGGCCCGTGTTCCGTGCTGTT
CTTCCTTCTGCTGCTGCATTTTTCACTCCCTCCCGTATCGTACCGTTACT
GTTCCACGCTAGGCGTACCCCCAGACTCGAATGCCTTCTACGGTCAGTAC
TCGGCTGGCCCTTGGGGGGGAGTGGGGAACGGTAGAGACGGTGCGACAGC
TGCAGCGGCGACGACAACGGAGGAGGTAAAAGGAGAAGCAACGTCGTCAA
GATCGGCGAGGTTAGAAGACACTGGGAGGCACCGGTACCGCGATGACGAT
GACGGGGTGGACGATTCCGGCGCCAACGCCAACAGCGATCGCGCCGAAAA
CGAAGACTCCGTACATACTCTAAGGGGCGTGGAAGAGGCGGTGGGAGCAA
CAGGAGGAGAAGGCGGACGCGCGCACATCAGGCGGGCAGGCGTGCGGGAA
GCGGCGGTGTTGGCGCCGGGAGATAACGACGACGATGACGAACAGAGCGA
TGACACTCACCATCGCGATCGCTTGTCCCACCAGGAGTTTCCGCTCTTTT
CGCCCCCTCGCGGCGCCGCCGGGTTTATTTCTAGCGATGGCGCTGGAACT
AGAGGCGGTGCGGATGGTAGGGTGTCGCCGTCAGCGGTCGGCCTGGCACC
GTCAAACGTCCAGCTCGGGCTGCTTAACTCTGTGTCGCCTTCGATGCTCT
TGGGCCCCAGTGCGGGCGCGTGGCTGGGTGCCACCGGAGGTATCGGAAGC
GGTGGGATCGCAAGCGGAGGCGGGGGTGGAGGCGACATCGTGATGTCGGC
CGCGGCTTCGCCGTCGTTCGTTCAGACCTCGCAGCTCGCGCCTCTGTTGC
TGTCACAGATGAACCCTCACGGGAGCTTCGGTAAGCTCTAAGTGATCTAT
TTAACAATGTGTAGCATTTAAGCGTAGGTCGACAGTGCTAGGCTGCTCCT
CAGTCCTTGTTTGCAGGCGGGCATCCTTGCGTGCAGTTAATATGGAAATA
TCGCGCGGTTTCCTATATAAAGTCACTACTGTGCGCGTTTTTCGGCGTGT
GTCGCGGCAAGGATCACAAGTTAAGAGAAGACGAGGCGAGAAATCACAAC
GCCCCATTTGATTTTGGGCGCCCACCAGGGAAATATCGTGCGATAGAAGA
GAAGAGTGCCTTCTACCCGCGTGCCGTTCATACGCTTCAGGACGGTACAG
GTTTAAAGGTTGGAGAGTCGATGATGTCCGCGTCGCACGCGTTTCGAAAC
CCTTAAAAGCGCGCTTAAAATCTTAGAATGTCACAACTCCCTTCCTCTCT
CTCTCTTGCCCCGGGAACACGCAGGCTGGGGTTCTCCGCAGTTTGGCCGT
GCAACCTTCGGCGCCCCTGCTCCTCCTCCCTCTGCTATTACCGGTCAGGG
ACAAGAGCACAACTTTTATTGGCTCGAAAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig46437:160..4140-

>mRNA_H-elongata_contig46437.11737.1 ID=mRNA_H-elongata_contig46437.11737.1|Name=mRNA_H-elongata_contig46437.11737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1872bp|location=Sequence derived from alignment at H-elongata_contig46437:160..4140- (Himanthalia elongata Himel1 dioecious)
AGGTACGGGGATGAGAACTACGCAGCCCCCTCTACGGCGCCGGTGGGAGG
GAGGTACGGGGATGAGAACTACGCAGCCCCCTCTACGGCGCCGGTGGGAG
GGGAAAACGCTGGAGTTGGGCGGGAGGGGCGGCCTCGCCGAAGGGCCGAC
ACCACCGCCCAGGGCAAAATGGAGAAATCGTTCCTAAGCTTCAGGAAAAC
GCTGGAGTTGGGCGGGAGGGGCGGCCTCGCCGAAGGGCCGACACCACCGC
CCAGGGCAAAATGGAGAAATCGTTCCTAAGCTTCAGGACGAACTACCCTG
ACTGGCAACCGGGGGCCGCGGGGCAAGAAATGATCGACCGTCTCACCGGG
TTCCAGCTGCAGTGCCTGCGGAAGGATGCCGAGATGATGGCCGCCGCTGG
TAGCACATCGGCGACCGTCGCGGCTGGTTCAACTCGAAGGACCGGCCCTG
GAGTAGGTGTTGGGATGGCGAACCCCGGAGCGGTGGGAGCACATCGCTGG
GGACAGAGCCCCGGACGAACTACCCTGACTGGCAACCGGGGGCCGCGGGG
CAAGAAATGATCGACCGTCTCACCGGGTTCCAGCTGCAGTGCCTGCGGAA
GGATGCCGAGATGATGGCCGCCGCTGGTAGCACATCGGCGACCGTCGCGG
CTGGTTCAACTCGAAGGACCGGCCCTGGAGTAGGTGTTGGGATGGCGAAC
CCCGGAGCGGTGGGAGCACATCGCTGGGGACAGAGCCCCGACTCCGTACA
TACTCTAAGGGGCGTGGAAGAGGCGGTGGGAGCAACAGGAGGAGAAGGCG
GACGCGCGCACATCAGGCGGGCAGGCGTGCGGGAAGCGGCGGTGTTGGCG
CCGGGAGATAACGACGACGATGACGAACAGAGCGATGACACTCACCATCG
CGATCGCTTGTCCCACCAGGAACTCCGTACATACTCTAAGGGGCGTGGAA
GAGGCGGTGGGAGCAACAGGAGGAGAAGGCGGACGCGCGCACATCAGGCG
GGCAGGCGTGCGGGAAGCGGCGGTGTTGGCGCCGGGAGATAACGACGACG
ATGACGAACAGAGCGATGACACTCACCATCGCGATCGCTTGTCCCACCAG
GAAGGCGGTGCGGATGGTAGGGTGTCGCCGTCAGCGGTCGGCCTGGCACC
GTCAAACGTCCAGCTCGGGCTGCTTAACTCTGTGTCGCCTTCGATGCTCT
TGGGCCCCAGTGCGGGCGCGTGGCTGGGTGCCACCGGAGGTATCGGAAGC
GGTGGGATCGCAAGCGGAGGCGGGGGTGGAGGCGACATCGTGATGTCGGC
CGCGGCTTCGCCGTCGTTCGTTCAGACCTCGCAGCTCGCGCCTCTGTTGC
TGTCACAGATGAACCCTCACGGGAGCTTCGAGGCGGTGCGGATGGTAGGG
TGTCGCCGTCAGCGGTCGGCCTGGCACCGTCAAACGTCCAGCTCGGGCTG
CTTAACTCTGTGTCGCCTTCGATGCTCTTGGGCCCCAGTGCGGGCGCGTG
GCTGGGTGCCACCGGAGGTATCGGAAGCGGTGGGATCGCAAGCGGAGGCG
GGGGTGGAGGCGACATCGTGATGTCGGCCGCGGCTTCGCCGTCGTTCGTT
CAGACCTCGCAGCTCGCGCCTCTGTTGCTGTCACAGATGAACCCTCACGG
GAGCTTCGGCTGGGGTTCTCCGCAGTTTGGCCGTGCAACCTTCGGCGCCC
CTGCTCCTCCTCCCTCTGCTATTACCGGTCAGGGACAAGAGCACAACTTT
TATTGGCTCGAAAAGGCTGGGGTTCTCCGCAGTTTGGCCGTGCAACCTTC
GGCGCCCCTGCTCCTCCTCCCTCTGCTATTACCGGTCAGGGACAAGAGCA
CAACTTTTATTGGCTCGAAAAG
back to top