mRNA_H-elongata_contig46436.11736.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46436.11736.1
Unique NamemRNA_H-elongata_contig46436.11736.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig46436.11736.1 vs. uniprot
Match: A0A6H5L384_9PHAE (Cytochrome b561 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L384_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.040e-44
Identity = 72/127 (56.69%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:    3 LHSVLSIAGLLFMLGGLYAIYANKQRMGKQHWTSWHAYVGLLTLALWAANVVIAGVNTNDFANRRFFFLWRSRSHRWLGATAYTAGLVAASLGIHSAWGLRSFG-VWGTWALTLGIAATFCGVISQG 380
            LHS LS   L  MLGGLYAIY NK++MGK HWTSWH++ G+L LALW  N  +AG NT D   RR  FLW+SR+HRW G  A+ AGL A  LG+HS WGLRS G   G W LT G+   F G+++ G
Sbjct:   68 LHSALSNLALASMLGGLYAIYTNKEKMGKNHWTSWHSWAGVLALALWVGNFAVAGANTADLEKRRLVFLWKSRNHRWAGKAAFCAGLGAVVLGLHSGWGLRSLGGERGAWTLTAGVLGVFVGIVASG 194
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BLAST of mRNA_H-elongata_contig46436.11736.1 vs. uniprot
Match: A0A812RVE1_9DINO (Aste57867_9460 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RVE1_9DINO)

HSP 1 Score: 76.6 bits (187), Expect = 6.660e-14
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 3 
Query:    6 HSVLSIAGLLFMLGGLYAIYANKQRMGKQHWTSWHAYVGLLTLALWAANVVIAGVNTNDFANRRFFFLWRSRSHRWLGATAYTAGLVAASLGIHSAWGLRSFGVWGTWALT--LGIAATFCGVISQGLGVIPTAAHKKG 416
            H V +IA +     G +AI+ NK   GK H+TSWH++ GL TLALW  N+ +         +    + WR   HR +G  A T  L A   GI S WG  + G    W LT  +G+ A+    ++QG  + P+A  K G
Sbjct:   77 HGVTNIALVAVSAVGFWAIFQNKNLHGKAHFTSWHSWAGLATLALWLMNLALGLQRLVALGS----WQWRHVLHRLVGTLAGTISLGAVVTGIWSQWGQAALGAHLQWILTALIGLVAS----LAQGTSLWPSAKAKHG 207
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BLAST of mRNA_H-elongata_contig46436.11736.1 vs. uniprot
Match: F0WN18_9STRA (Uncharacterized protein AlNc14C164G7850 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WN18_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.650e-8
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 3 
Query:    3 LHSVLSIAGLLFMLGGLYAIYANKQRMGKQHWTSWHAYVGLLTLALWAANVVIAGVNTNDFANRRFFFLWRSRSHRWLGATAYTAGLVAASLGIHSA-WGLRSFGVWGTWALTLGIAATFCGVISQGLGVIPTAAHKK 413
            +H    +     ML G   IY NKQ   KQH+TS H++V +L+  L+  ++ + G+     A R   +LWR   HR  G      G ++A LG++S  WGL  FG    + L L I   +  ++ + L V    AH+ 
Sbjct:   72 IHFACQLLAFTCMLAGGIVIYMNKQMTQKQHFTSLHSWVAVLSFGLYTLSL-LRGIMRTVCAGRIVKWLWRDTYHRVGGFGGSVLGAMSAVLGLYSGMWGLNHFGDQNRFNLALMIVLGYLFLLGRTL-VADQNAHRN 207
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BLAST of mRNA_H-elongata_contig46436.11736.1 vs. uniprot
Match: A0A024G6H8_9STRA (Cytochrome b561 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6H8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.340e-8
Identity = 40/128 (31.25%), Postives = 63/128 (49.22%), Query Frame = 3 
Query:    3 LHSVLSIAGLLFMLGGLYAIYANKQRMGKQHWTSWHAYVGLLTLALWAANVVIAGVNTNDFANRRFFFLWRSRSHRWLGATAYTAGLVAASLGIHSA-WGLRSFGVWGTWALTLGIAATFCGVISQGL 383
            +H    +     ML G   IYANK    KQH+TS H++V +L+   +  N+  +GV     A +R  +LWR   HR +G ++   G +    G++S  WGL  FG    + L L I   +  ++ + L
Sbjct:   71 IHLACQLLAFSCMLVGGVVIYANKSMSKKQHFTSSHSWVAVLSFGFYIVNL-FSGVIRTVCAGKRIKWLWRDTYHRIIGFSSSAFGAMTVVQGLNSGVWGLNQFGHQNRFNLALMIVLGYLFLLGRAL 197
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BLAST of mRNA_H-elongata_contig46436.11736.1 vs. uniprot
Match: A0A485KMY0_9STRA (Aste57867_9460 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMY0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.920e-6
Identity = 39/137 (28.47%), Postives = 64/137 (46.72%), Query Frame = 3 
Query:    6 HSVLSIAGLLFMLGGLYAIYANKQRMGKQHWTSWHAYVGLLTLALWAANVVIAGVNTNDFANRRFFFLWRSRSHRWLGATAYTAGLVAASLGIHSA-WGLRSFGVWGTWALTLGIAATFCGVISQGLGVIPTAAHKK 413
            H ++ I  ++ M  G  AIY NK++  + H+TS H+++G   L  +  N       T      +  + W+  +HR+ G  A+    VA + G +S  WG  + G  G  A +  IA     V+++ L V P  A  K
Sbjct:   71 HVLMQILTVILMTIGFGAIYVNKEKNNRPHFTSIHSWIGCTALGFYYMNFFFGMFKTYG---GKVNWQWKDTAHRYSGTLAFLTSGVAVAYGFYSGGWGRANLGQQGQLAASAAIALLHVAVVAK-LLVSPNTAPVK 203
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BLAST of mRNA_H-elongata_contig46436.11736.1 vs. uniprot
Match: A0A2R5GWD5_9STRA (Cytochrome b561 domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWD5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.420e-5
Identity = 31/100 (31.00%), Postives = 48/100 (48.00%), Query Frame = 3 
Query:    6 HSVLSIAGLLFMLGGLYAIYANKQRMGKQHWTSWHAYVGLLTLALWAANVVIAGVNTN-DFA----NRRFFFLWRSRSHRWLGATAYTAGLVAASLGIHS 290
            H+ L   G   +  G Y IY NK+   K+H+ SWHA++GL++L  W+A++       + DF     N+ F F+     HRW G        +A   G  +
Sbjct:   76 HAKLLTGGTALLWFGFYVIYTNKEMARKEHFLSWHAWIGLMSLFGWSASIPPLNATIHPDFGKAKTNQSFRFM-----HRWTGRIILALSWLACFTGFQT 170
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BLAST of mRNA_H-elongata_contig46436.11736.1 vs. uniprot
Match: C3YV41_BRAFL (Ascorbate ferrireductase (transmembrane) n=4 Tax=Branchiostoma TaxID=7737 RepID=C3YV41_BRAFL)

HSP 1 Score: 52.8 bits (125), Expect = 3.640e-5
Identity = 31/102 (30.39%), Postives = 50/102 (49.02%), Query Frame = 3 
Query:    6 HSVLSIAGLLFMLGGLYAIYANKQRMGKQHWTSWHAYVGLLTLALWAANVVIAGVNTNDFANRRFFFLWRSRS-----HRWLGATAYTAGLVAASLGIHSAW 296
            H +L    ++  +GGL AIY NK+RMGK H+ SWH  +G+ T+  ++    + G+N       +    W + +     H   G   Y     + +LGI+S W
Sbjct:   66 HWILQAGAVVCAVGGLMAIYLNKERMGKDHFVSWHGLIGVTTV-FYSVVQSMGGIN---LLYPKLLKSWMTLAQLKMYHATFGLLGYALACSSLALGINSNW 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46436.11736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L384_9PHAE3.040e-4456.69Cytochrome b561 domain-containing protein n=2 Tax=... [more]
A0A812RVE1_9DINO6.660e-1435.97Aste57867_9460 protein n=1 Tax=Symbiodinium sp. KB... [more]
F0WN18_9STRA4.650e-831.88Uncharacterized protein AlNc14C164G7850 n=1 Tax=Al... [more]
A0A024G6H8_9STRA6.340e-831.25Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A485KMY0_9STRA2.920e-628.47Aste57867_9460 protein n=1 Tax=Aphanomyces stellat... [more]
A0A2R5GWD5_9STRA2.420e-531.00Cytochrome b561 domain-containing protein n=1 Tax=... [more]
C3YV41_BRAFL3.640e-530.39Ascorbate ferrireductase (transmembrane) n=4 Tax=B... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46436contigH-elongata_contig46436:2279..4032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue3.8e-34
Seed eggNOG ortholog2880.D7FZP2
EggNOG free text desc.Eukaryotic cytochrome b561
EggNOG OGs2D0D3@1,2SDR0@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptioncytochrome b-561 domain protein
Ec32 orthologEc-08_001190.1
Exons2
Model size564
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46436.11736.1prot_H-elongata_contig46436.11736.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46436 2421..3994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.096668-UTR-H-elongata_contig46436:2278..24201622930769.096668-UTR-H-elongata_contig46436:2278..2420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46436 2279..2420 -
1691679561.8137538-UTR-H-elongata_contig46436:2278..24201691679561.8137538-UTR-H-elongata_contig46436:2278..2420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46436 2279..2420 -
1622930769.1402519-UTR-H-elongata_contig46436:3994..40321622930769.1402519-UTR-H-elongata_contig46436:3994..4032Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46436 3995..4032 -
1691679561.8473291-UTR-H-elongata_contig46436:3994..40321691679561.8473291-UTR-H-elongata_contig46436:3994..4032Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46436 3995..4032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.110206-CDS-H-elongata_contig46436:2420..26131622930769.110206-CDS-H-elongata_contig46436:2420..2613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46436 2421..2613 -
1691679561.8266478-CDS-H-elongata_contig46436:2420..26131691679561.8266478-CDS-H-elongata_contig46436:2420..2613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46436 2421..2613 -
1622930769.1245553-CDS-H-elongata_contig46436:3803..39941622930769.1245553-CDS-H-elongata_contig46436:3803..3994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46436 3804..3994 -
1691679561.8370473-CDS-H-elongata_contig46436:3803..39941691679561.8370473-CDS-H-elongata_contig46436:3803..3994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46436 3804..3994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46436.11736.1

>prot_H-elongata_contig46436.11736.1 ID=prot_H-elongata_contig46436.11736.1|Name=mRNA_H-elongata_contig46436.11736.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MLGGLYAIYANKQRMGKQHWTSWHAYVGLLTLALWAANVVIAGVNTNDFA
NRRFFFLWRSRSHRWLGATAYTAGLVAASLGIHSAWGLRSFGVWGTWALT
LGIAATFCGVISQGLGVIPTAAHKKGG*
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mRNA from alignment at H-elongata_contig46436:2279..4032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46436.11736.1 ID=mRNA_H-elongata_contig46436.11736.1|Name=mRNA_H-elongata_contig46436.11736.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1754bp|location=Sequence derived from alignment at H-elongata_contig46436:2279..4032- (Himanthalia elongata Himel1 dioecious)
AGCTTCACAGCGTCCTGAGCATCGCCGGCCTCCTCTTCATGCTGGGAGGC
CTGTACGCAATATATGCCAACAAGCAGAGGATGGGCAAGCAACACTGGAC
CTCGTGGCACGCTTACGTCGGGCTGCTGACCCTCGCGCTGTGGGCGGCGA
ACGTGGTAATCGCCGGAGTGAACACGAACGACTTCGCAAACAGGCGCTTC
TTCTTCTTGTGGAGATCTCGGAGTCACAGGTAATAGGTGGTAATGACAAA
GACACTGTTGCAAGATGCAGGAATCAAAATATTCCGTCCCGCTGCGTCGG
TGGGATGAGTGCCTTGGAATGCTTCGTTTTGTCTAGGCCGGCGATAGTTT
CGGGCCAGATCGCCGCGCCGTTTGGCGGGTGAAATGGGGTGGGGGAACAA
GGCAGTTACGATTAATCGGTTGCTACCTCTCGTCGCCCGAGTAGCACCAT
TGTAAATCACGAAGCCCACTTAAGTGCGGAAATCATGCGTTATAATTAAA
TCATGTCAGCTTAGATCATTTTTTTTTAATCTTGCGGAAAACCCTGAGGT
GGGAGTAAGCAAAGTTCGACCATTGGTTAATCGAGATATACGAGTGCCGA
GCTCGCATCGCGCTAAAGACTCGCAGGCGTGAACCCGAGAGAGAGGGGCT
GATTCCTTATGTCCAACAGCTATGACGGGATGAGCAACGTTGTAGTATCA
ATAGGTGCTATTAGTAATCCATCATAACAGTAGCACGCTAAATGATTGAT
CAAACCCCATCGGCAGAAAGCCATACGGTAGTAAATAAATAATAATATAT
AGCCATCAATTAACCAACCAATAAATACATGAATACATGAATCAATCATC
AATCATCAATCAATCACTGTTCGTGTGAGGCGCGCGAAGCGAGATCCTTC
TATAACGCAGCGCTGGTTATCAAAGGTTGGTGCGTGCACGACTTCCACTT
GCCGCCCCTCGTGGTTGTATTTATGCGCGCGCGGCCTCCTCCTCGACGAA
CAAACGTAACGAAACTAATTGAAAACGTAACAAAACTGTAACAAAACCTA
ACGTAACGTCGCGCACCGTTCGGCATCTCCCACCCAACAAAACTCGACGA
CTTTTCTCGACGCCGATAGAAAATCGTTGAGTGCTTTTCGACGGTATTAT
GGGCCTCGCGCACAGCAGCACTGACCCACCTTCGTTCTTCTGTTATTTTT
CGGATTCCCTCGCCTGATTCCCTCGCCGCGCGCGCTGTGCGGCGTAAGTC
CCCGTGAAATGTTCCTAACATAGGTGCTCTTTGTATGTATCAAGCACACG
ACTGCGGCTGACTGCGATAGTATAGCGTTGCATGTATTTGTGTATTTGTC
TCTCGTCGACGTCAAATCCTGAAAAGCGATCCGTGATATGAAATGCTCGT
ACCTGCCATCATCGAGCAGGTGGTTGGGCGCTACAGCGTACACGGCTGGT
CTCGTTGCAGCGTCCCTGGGTATACACAGCGCCTGGGGCTTGCGGTCGTT
CGGAGTTTGGGGAACGTGGGCGCTCACCTTAGGCATCGCCGCAACCTTTT
GCGGCGTTATTTCGCAGGGACTCGGGGTAATCCCGACCGCGGCACACAAG
AAAGGAGGATGAAGCTACCCGCCATATTTTGTGGCTAGCTCTAATTTCTA
CTAATCGCAGTTCGAGGTTAAAAAGCGCTCTGACGGCTTTTGCCGAACCG
CATTCCACCGTGGACGCAAATGTCTAGACTAGACTAAATATCGCCTTCCT
CGCA
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Coding sequence (CDS) from alignment at H-elongata_contig46436:2279..4032-

>mRNA_H-elongata_contig46436.11736.1 ID=mRNA_H-elongata_contig46436.11736.1|Name=mRNA_H-elongata_contig46436.11736.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig46436:2279..4032- (Himanthalia elongata Himel1 dioecious)
ATGCTGGGAGGCCTGTACGCAATATATGCCAACAAGCAGAGGATGGGCAA
GCAACACTGGACCTCGTGGCACGCTTACGTCGGGCTGCTGACCCTCGCGC
TGTGGGCGGCGAACGTGGTAATCGCCGGAGTGAACACGAACGACTTCGCA
AACAGGCGCTTCTTCTTCTTGTGGAGATCTCGGAGTCACAGATGCTGGGA
GGCCTGTACGCAATATATGCCAACAAGCAGAGGATGGGCAAGCAACACTG
GACCTCGTGGCACGCTTACGTCGGGCTGCTGACCCTCGCGCTGTGGGCGG
CGAACGTGGTAATCGCCGGAGTGAACACGAACGACTTCGCAAACAGGCGC
TTCTTCTTCTTGTGGAGATCTCGGAGTCACAGGTGGTTGGGCGCTACAGC
GTACACGGCTGGTCTCGTTGCAGCGTCCCTGGGTATACACAGCGCCTGGG
GCTTGCGGTCGTTCGGAGTTTGGGGAACGTGGGCGCTCACCTTAGGCATC
GCCGCAACCTTTTGCGGCGTTATTTCGCAGGGACTCGGGGTAATCCCGAC
CGCGGCACACAAGAAAGGAGGATGAGTGGTTGGGCGCTACAGCGTACACG
GCTGGTCTCGTTGCAGCGTCCCTGGGTATACACAGCGCCTGGGGCTTGCG
GTCGTTCGGAGTTTGGGGAACGTGGGCGCTCACCTTAGGCATCGCCGCAA
CCTTTTGCGGCGTTATTTCGCAGGGACTCGGGGTAATCCCGACCGCGGCA
CACAAGAAAGGAGGATGA
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