mRNA_H-elongata_contig46370.11729.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Match: D7FQB8_ECTSI (Folate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB8_ECTSI) HSP 1 Score: 313 bits (801), Expect = 2.150e-104 Identity = 154/194 (79.38%), Postives = 170/194 (87.63%), Query Frame = 1
Query: 1 QVYDKGPSPYKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSYERIKVRALAVWPYGGETELGPLHHLTAGYLAGAMMVFATNPIWMVKTRMQLQDKLSISGTIRPYAGPVDAVRTIVREEGPLALYKGAVPALVLCGQGAVQFAVYEWLKARVPKKNENTPLESLVMGGVSKMLSTLVTYPTQVI 582
QVYDKGPSPYKS+GTA RTI REEGARALYQGLGPALLGNAVAWGGFFY YE+IK A P E +LG +HHL AGY+AGAMMV ATNP+WM+KTRMQLQDK + SG +RPY+G +DAVRTI REEGPLALYKGAVPAL+LCGQGAVQFAVYEWLKARVPK+NENTP ESL+MGG SK+LSTLVTYPTQ +
Sbjct: 70 QVYDKGPSPYKSLGTAFRTIIREEGARALYQGLGPALLGNAVAWGGFFYCYEKIKTAIRARVPQ--EADLGAVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDKKAKSGGVRPYSGLMDAVRTITREEGPLALYKGAVPALMLCGQGAVQFAVYEWLKARVPKRNENTPQESLLMGGASKILSTLVTYPTQYL 261
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Match: A0A835YH58_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH58_9STRA) HSP 1 Score: 254 bits (649), Expect = 3.360e-80 Identity = 142/265 (53.58%), Postives = 177/265 (66.79%), Query Frame = 1
Query: 1 QVYDKGPSPYKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSYERIKVRALAVWPYGGETELGPLHHLTAGYLAGAMMVFATNPIWMVKTRMQLQ--DKLSISGTIRPYAGPVDAVRTIVREEGPLALYKGAVPALVLCGQGAVQFAVYEWLKARVPKK-NENTPLESLVMGGVSKMLSTLVTYPTQVIKSRLQQRGNEEEVKAGAPR--YRGTWHCTTTIVRREGLRGFFKGCVPYALRAAPASAITFAVYEEVLK 780
Q Y +G SPY S+ +A +TI +EG RALY GL P++ G +AWG +FY Y+ K A+ G +L HHLTAG + +V NP+W+VKTR+QLQ D G RPY G DA+ TI REEG LALYKG VPA++L QGA+QFA YEWLK VP+ ++ P+ESLVMGG SK+ +++VTYPTQVIK+RLQ R A A R Y GT C I R+EG RGFF+GCVPYALRAAPASA+TF VYEE ++
Sbjct: 77 QAYHQGASPYASLSSAFKTIAEQEGWRALYAGLVPSVWGGGLAWGAYFYLYQMSKD---ALQTGTGAEQLNVSHHLTAGNI----LVLLGNPVWLVKTRLQLQTRDNTQRLGR-RPYRGFTDALVTIAREEGALALYKGIVPAMLLSTQGALQFAAYEWLKGWVPRDLQQSKPVESLVMGGGSKIFASVVTYPTQVIKTRLQDRAAAAVSAAAAGRSIYTGTAQCAALIWRQEGARGFFRGCVPYALRAAPASAVTFVVYEEAMR 333
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Match: W7T4J3_9STRA (Mitochondrial folate transporter carrier-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4J3_9STRA) HSP 1 Score: 228 bits (580), Expect = 7.120e-69 Identity = 125/277 (45.13%), Postives = 166/277 (59.93%), Query Frame = 1
Query: 1 QVYDKGPSPYKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSYERIKVRALAVWPYGGETELGPLHHLTAGYLAGAMMVFATNPIWMVKTRMQLQ--------------------DKLSISGTIRPYAGPVDAVRTIVREEGPLALYKGAVPALVLCGQGAVQFAVYEWLKARVPKKNENTPLESLVMGGVSKMLSTLVTYPTQVIKSRLQQRGNEEEVKAGAPRYRGTWHCTTTIVRREGLRGFFKGCVPYALRAAPASAITFAVYEE 771
QVYD+ P+ S+ +++I ++EG R LY+GL PALL N ++WGG+FY YE K R L ++ +HHL + + AG +MVF TNP+W++KTRMQLQ S G Y G A+RTIVREEG L LYKG +PAL+L GA+QF YEWLK +V + + V+GG++K+L+ LVTYP QV+K+RLQQR + A RY TW C I R EGL GFFKGC+P L+ AP++ ITF VYE+
Sbjct: 104 QVYDRAGRPFPSMYKGMQSIVQQEGYRGLYKGLTPALLANGLSWGGYFYFYEHAKNRYLRQ-----HRQITSVHHLLSAFEAGIIMVFLTNPLWLIKTRMQLQPGGASALESMTKAVTAPIVASTASHLGKQIAYTGVTQALRTIVREEGVLGLYKGILPALLLTSHGAIQFVTYEWLK-KVVEPYQAPVFSFSVLGGMAKILAGLVTYPPQVVKARLQQR----DTGASRWRYTSTWDCVLKIWRFEGLLGFFKGCLPNVLKTAPSAVITFLVYEQ 370
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Match: A0A836CHG8_9STRA (Folate transporter (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG8_9STRA) HSP 1 Score: 211 bits (538), Expect = 7.730e-65 Identity = 111/199 (55.78%), Postives = 136/199 (68.34%), Query Frame = 1
Query: 1 QVYDKGPSPYKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSYERIKVRALAVWPYGGETELGPLHHLTAGYLAGAMMVFATNPIWMVKTRMQLQDKLSISGTI----RPYAGPVDAVRTIVREEGPLALYKGAVPALVLCGQGAVQFAVYEWLKARVPKK-NENTPLESLVMGGVSKMLSTLVTYPTQVI 582
Q YDKG SPY+S+G A TI ++ G LY GLGPA+LG+ V+WGG+FY YE K ++ + +LGP+HHLTAG AG +V TNPIW+VKTRMQLQ T RPY G DAV TIVREEG LALYKG VPAL+L GQGA+QFA YEWLKARVP+ +N P ESL+MG SK+ ++LV P ++
Sbjct: 28 QAYDKGKSPYRSLGAAFTTIVKQNGWSGLYSGLGPAVLGSGVSWGGYFYLYEWAKT---SMRRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQNDPHESLLMGASSKVFASLVRTPNMLL 223
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Match: A0A2R6S2L2_ACTCC (Folate transporter like n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6S2L2_ACTCC) HSP 1 Score: 208 bits (529), Expect = 1.380e-62 Identity = 121/267 (45.32%), Postives = 161/267 (60.30%), Query Frame = 1
Query: 28 YKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSYERIKVRALAVWPYGGETELGPLHHLTAGYLAGAMMVFATNPIWMVKTRMQLQDKLSISGTIRPYAGPVDAVRTIVREEGPLALYKGAVPALVLCGQGAVQFAVYEWL-KARVPKKNENTP-----------LESLVMGGVSKMLSTLVTYPTQVIKSRLQQRGNEEEVKAGAPRYRGTWHCTTTIVRREGLRGFFKGCVPYALRAAPASAITFAVYEEVLKALML 792
YK+ A+ TI R EG R LY G PA+LG+ ++W +F+ Y + K R L G+ EL P+ HL + AGA++ F TNP+W+VKTR+QLQ L + RPY+G DAV+TI+REEG ALY+G VP L L GA+QF YE L KA + ++E + ++ ++G SK+ + LVTYP QVI+SRLQQR + KAG P Y +WH R EGLRGF+KG L+ PA++ITF VYE VL L L
Sbjct: 51 YKNTSQALWTIARTEGLRGLYAGFYPAVLGSTISWSLYFFFYSKAKQRYLK-----GKQELTPVLHLASAAEAGALVCFCTNPLWLVKTRLQLQTPLHQT---RPYSGLYDAVKTILREEGWTALYRGLVPGLFLVTHGAIQFTAYEELRKAVIDFRSEESEEEFSGVELLNTIDYAMLGASSKLAAILVTYPFQVIRSRLQQRPS----KAGIPIYMDSWHAIKETARFEGLRGFYKGITANLLKNVPAASITFVVYENVLNMLKL 305
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Match: A0A6P4A874_ZIZJJ (folate transporter 1, chloroplastic isoform X1 n=6 Tax=Rhamnaceae TaxID=3608 RepID=A0A6P4A874_ZIZJJ) HSP 1 Score: 208 bits (529), Expect = 1.590e-62 Identity = 124/269 (46.10%), Postives = 164/269 (60.97%), Query Frame = 1
Query: 28 YKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSYERIKVRALAVWPYGGETELGPLHHLTAGYLAGAMMVFATNPIWMVKTRMQLQDKLSISGTIRPYAGPVDAVRTIVREEGPLALYKGAVPALVL-CGQGAVQFAVYEWL----------KARVPKKNENTPLESL---VMGGVSKMLSTLVTYPTQVIKSRLQQRGNEEEVKAGAPRYRGTWHCTTTIVRREGLRGFFKGCVPYALRAAPASAITFAVYEEVLKALML 792
YK+ AI TI R EG R LY G PA+LG+ ++WG +F+ Y+R K R + E +L P HHL + AGA++ F TNP+W+VKTR+QLQ+ L + +PY+G DA+RTI+REEG ALYKG VP+L L GA+QF VYE L K+ ++ T L S+ +G SK+++ LV+YP QVI++RLQQR E G PRY +WH R EGLRGF+KG P L+ PA++ITF VYE VL L L
Sbjct: 53 YKNTAHAIFTIARLEGLRGLYAGFYPAVLGSTLSWGLYFFFYDRAKQR----YSKNREEKLSPGHHLASAAEAGALVSFCTNPVWLVKTRLQLQNPLHQT---QPYSGFHDALRTIMREEGWKALYKGIVPSLFLQVSHGAIQFTVYEELRKVVVDLKSRKSTESSESSETVLNSIDYAALGASSKIVAILVSYPFQVIRARLQQRPGIE----GIPRYMDSWHVVKETARFEGLRGFYKGITPNLLKNVPAASITFVVYENVLNLLKL 310
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Match: A0A834TUP4_9FABA (Folate transporter 1, chloroplastic isoform X1 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TUP4_9FABA) HSP 1 Score: 207 bits (527), Expect = 2.920e-62 Identity = 119/268 (44.40%), Postives = 161/268 (60.07%), Query Frame = 1
Query: 28 YKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSYERIKVRALAVWPYGGETELGPLHHLTAGYLAGAMMVFATNPIWMVKTRMQLQDKLSISGTIRPYAGPVDAVRTIVREEGPLALYKGAVPALVLCGQGAVQFAVYEWLK----------ARVPKKNENTPLESL---VMGGVSKMLSTLVTYPTQVIKSRLQQRGNEEEVKAGAPRYRGTWHCTTTIVRREGLRGFFKGCVPYALRAAPASAITFAVYEEVLKALML 792
YK+ AI TI R EG R LY G PA+LG+ ++WG +F+ Y++ K R + + +LGP +HL + AGA++ TNP+W+VKTRMQLQ L + +PY G DA +TI+REEG ALY+G VP L L GA+QF YE L+ + + +N + L S V+G SK+ + L+TYP QV++SRLQQR + + G PRY +WH R EG+RGF+KG P L+ PAS+ITF VYE VLK L L
Sbjct: 51 YKNTAHAIFTIARSEGLRGLYAGFLPAVLGSTISWGLYFFFYDKAKQR----YARNKDEKLGPGYHLASAAEAGALVCLCTNPVWLVKTRMQLQTPLHQT---QPYNGLYDAFKTIMREEGLRALYRGIVPGLFLVSHGAIQFTAYEELRKVIVDLKSKESEIHHQNPDKLLNSADYAVLGATSKVAAILLTYPFQVVRSRLQQRPSID----GIPRYMDSWHVMKETARFEGVRGFYKGITPNLLKNVPASSITFIVYENVLKLLKL 307
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Match: A0A1S3B2N4_CUCME (folate transporter 1, chloroplastic isoform X1 n=12 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3B2N4_CUCME) HSP 1 Score: 207 bits (526), Expect = 3.460e-62 Identity = 128/281 (45.55%), Postives = 166/281 (59.07%), Query Frame = 1
Query: 1 QVYDKGPS---PYKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSYERIKVRALAVWPYGGETELGPLHHLTAGYLAGAMMVFATNPIWMVKTRMQLQDKLSISGTIRPYAGPVDAVRTIVREEGPLALYKGAVPALVL-CGQGAVQFAVYEWLK----------ARVPKKNENTPLES---LVMGGVSKMLSTLVTYPTQVIKSRLQQRGNEEEVKAGAPRYRGTWHCTTTIVRREGLRGFFKGCVPYALRAAPASAITFAVYEEVLKALML 792
QVYD S YK+ AI TI R EG R LY G PA+LG+ V+WG +F+ Y R K R + G+ +L P HL + AGA++ F TNP+W+VKTRMQLQ L + +PY+G DA RTI+REEG ALYKG VP L+L GA+QF VYE L+ RV ++ L S V+GG SK+ + L+TYP QVI++RLQQR + G PRY ++H R EG+RGF++G P L+ PA++ITF VYE VL L L
Sbjct: 32 QVYDGRGSNLPTYKNTVNAILTITRMEGLRGLYAGFYPAVLGSTVSWGLYFFFYGRAKQR----YSDSGKKDLSPSLHLASAAEAGALVCFCTNPVWLVKTRMQLQSPLHQA---QPYSGLYDAFRTILREEGFAALYKGIVPGLMLQVSHGAIQFTVYEELRKIIANSRSKGTRVDAQSSGELLNSGDYAVLGGTSKIAAMLLTYPFQVIRARLQQRPGHD----GIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVYENVLNLLKL 301
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Match: A0A6N2LAC1_SALVM (Uncharacterized protein n=9 Tax=Saliceae TaxID=238069 RepID=A0A6N2LAC1_SALVM) HSP 1 Score: 207 bits (528), Expect = 3.980e-62 Identity = 124/269 (46.10%), Postives = 165/269 (61.34%), Query Frame = 1
Query: 28 YKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSYERIKVRALAVWPYGGETELGPLHHLTAGYLAGAMMVFATNPIWMVKTRMQLQDKLSISGTIRPYAGPVDAVRTIVREEGPLALYKGAVPALVLCGQGAVQFAVYEWL-------KARVPKKN----ENTPLESL---VMGGVSKMLSTLVTYPTQVIKSRLQQRGNEEEVKAGAPRYRGTWHCTTTIVRREGLRGFFKGCVPYALRAAPASAITFAVYEEVLKALML 792
YK+ AI I R EG + LY G PA+LG+ V+WG +F+ Y R K R + + +L P HL + AGA++ F TNP+W+VKTR+QLQ+ L + RPY+G DAV+TI+REEG ALYKG VP+L L GA+QF YE L KA+ K++ ++ L S+ ++GG SK+ + ++TYP QVI+SRLQQR + E G PRY +WH R EG RGF+KG P L+ PAS+ITF VYE VLK L L
Sbjct: 73 YKNTAHAILNIARLEGLKGLYAGFFPAVLGSTVSWGLYFFFYSRAKQR----YSKNRDEKLSPGLHLASAAEAGALVCFCTNPLWLVKTRLQLQNPLHQT---RPYSGLYDAVKTIMREEGWRALYKGIVPSLFLVSHGALQFTAYEELRKVIVDFKAKQRKEDCKIADSQLLNSVDYAILGGSSKIAAIILTYPFQVIRSRLQQRPSME----GIPRYMDSWHVMKETARFEGFRGFYKGMTPNLLKNVPASSITFIVYENVLKLLKL 330
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Match: A0A7J7CVJ8_TRIWF (Folate transporter 1 chloroplastic-like isoform X1 n=3 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CVJ8_TRIWF) HSP 1 Score: 206 bits (523), Expect = 1.270e-61 Identity = 124/269 (46.10%), Postives = 160/269 (59.48%), Query Frame = 1
Query: 28 YKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSYERIKVRALAVWPYGGETELGPLHHLTAGYLAGAMMVFATNPIWMVKTRMQLQDKLSISGTIRPYAGPVDAVRTIVREEGPLALYKGAVPALVL-CGQGAVQFAVYEWLKARV----PKKNENTP---------LESLVMGGVSKMLSTLVTYPTQVIKSRLQQRGNEEEVKAGAPRYRGTWHCTTTIVRREGLRGFFKGCVPYALRAAPASAITFAVYEEVLKALML 792
YK+ AI TI R EG + LY G PA+ G+ V+W +F+ Y R K R + L P HL + AGA++ TNPIW+VKTR+QLQ L S RPY+G DA+RTI+REEG ALYKG P+L+L GAVQF VYE L+ + K +E P + ++GG SK+ + L+TYP QVI++RLQQR N + G PRY +WH R EG+RGF+KG VP L+ APAS+ITF VYE V+K L L
Sbjct: 53 YKNTAHAILTIARSEGLKGLYAGFYPAVFGSTVSWALYFFFYGRAKER----YSRNRSEALSPGLHLASAAEAGALVSLCTNPIWLVKTRLQLQTPLHHS---RPYSGLYDALRTIMREEGWSALYKGLGPSLILQVSHGAVQFTVYEELRKVICNLKSKGSEQKPETADDLLNSFDYAMLGGTSKVAAILLTYPFQVIRARLQQRPNTD----GTPRYMDSWHVMKQTARFEGIRGFYKGIVPNLLKNAPASSITFIVYENVMKLLRL 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46370.11729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46370.11729.1 >prot_H-elongata_contig46370.11729.1 ID=prot_H-elongata_contig46370.11729.1|Name=mRNA_H-elongata_contig46370.11729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp QVYDKGPSPYKSVGTAIRTIFREEGARALYQGLGPALLGNAVAWGGFFYSback to top mRNA from alignment at H-elongata_contig46370:88..3379- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig46370.11729.1 ID=mRNA_H-elongata_contig46370.11729.1|Name=mRNA_H-elongata_contig46370.11729.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3292bp|location=Sequence derived from alignment at H-elongata_contig46370:88..3379- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig46370:88..3379- >mRNA_H-elongata_contig46370.11729.1 ID=mRNA_H-elongata_contig46370.11729.1|Name=mRNA_H-elongata_contig46370.11729.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig46370:88..3379- (Himanthalia elongata Himel1 dioecious)back to top |