mRNA_H-elongata_contig46355.11727.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46355.11727.1
Unique NamemRNA_H-elongata_contig46355.11727.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig46355.11727.1 vs. uniprot
Match: D7FHW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 8.500e-10
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:  406 MEDRIKLEVQTLVRSDVDHRVSLGERATESLRKHVVELAEEVSRLGNTVLELKGVTQSQKDNVEQVLVDSKRNRCAV 636
            MEDRIKLEVQT+VR DVD RVSL ERA E++R+ V  LAEEV+ LG  V      T +    +EQ+    +R R  V
Sbjct:    1 MEDRIKLEVQTVVRRDVDQRVSLAERAAEAVRQRVDGLAEEVASLGEIVRRSSATTTAHATALEQLQASQQRTRSTV 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46355.11727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHW6_ECTSI8.500e-1051.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46355contigH-elongata_contig46355:2774..4051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006160.1
Exons2
Model size636
Cds size633
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46355.11727.1prot_H-elongata_contig46355.11727.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46355 2774..4048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.165156-CDS-H-elongata_contig46355:2773..29561622930768.165156-CDS-H-elongata_contig46355:2773..2956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46355 2774..2956 -
1691679561.468146-CDS-H-elongata_contig46355:2773..29561691679561.468146-CDS-H-elongata_contig46355:2773..2956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46355 2774..2956 -
1622930768.224933-CDS-H-elongata_contig46355:3598..40481622930768.224933-CDS-H-elongata_contig46355:3598..4048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46355 3599..4048 -
1691679561.4781618-CDS-H-elongata_contig46355:3598..40481691679561.4781618-CDS-H-elongata_contig46355:3598..4048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46355 3599..4048 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.2424142-UTR-H-elongata_contig46355:4048..40511622930768.2424142-UTR-H-elongata_contig46355:4048..4051Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46355 4049..4051 -
1691679561.4938407-UTR-H-elongata_contig46355:4048..40511691679561.4938407-UTR-H-elongata_contig46355:4048..4051Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46355 4049..4051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46355.11727.1

>prot_H-elongata_contig46355.11727.1 ID=prot_H-elongata_contig46355.11727.1|Name=mRNA_H-elongata_contig46355.11727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp
MTPEIESGWEANIARLIEKANDTLAGSTKSRSSRNYYYSNSRGGSGRSDV
GASPSSSKRVSFPLSSAPRLSRGDRSASYRVGTGGWETSLFDNHSQVPLH
HPDGFQSSLPPAAARVGSFSRSAEVRVNDARIAGMEDRIKLEVQTLVRSD
VDHRVSLGERATESLRKHVVELAEEVSRLGNTVLELKGVTQSQKDNVEQV
LVDSKRNRCAV
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mRNA from alignment at H-elongata_contig46355:2774..4051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46355.11727.1 ID=mRNA_H-elongata_contig46355.11727.1|Name=mRNA_H-elongata_contig46355.11727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-elongata_contig46355:2774..4051- (Himanthalia elongata Himel1 dioecious)
ACAATGACGCCAGAGATTGAAAGTGGTTGGGAGGCCAATATCGCTAGGCT
CATAGAAAAGGCGAACGATACTCTTGCAGGATCAACCAAATCGCGATCAT
CCCGCAACTACTACTACTCCAACAGTCGAGGAGGAAGCGGCCGCAGTGAT
GTTGGAGCGTCGCCTTCTTCTTCCAAGCGGGTATCTTTCCCACTGAGTTC
TGCCCCGAGATTATCCCGAGGCGATCGAAGCGCTTCGTATCGAGTTGGAA
CAGGGGGCTGGGAAACTTCATTATTTGATAACCACTCGCAGGTTCCGCTG
CATCATCCCGACGGATTCCAGTCGAGCCTACCGCCGGCAGCCGCCCGGGT
TGGGTCCTTTTCGAGGTCGGCCGAGGTCAGGGTTAACGATGCCAGGATTG
CTGGCATGGAGGACAGAATCAAACTAGAAGTACAAACGTTGGTGCGAAGC
GATGTGAGTACCGTGGGCCAAGAAGAATCTCGATTGGCGTTGATAAACAC
GTTAAATCAAGAGCGTATGTTGCACTTCTTTTATCTACAGCAGAGGGTCA
TATCGAGCCCAAAGGACGATGTTTTCGATAAAATGTCGGGGAAATTATAC
AATATTCCCGGCAGTAGGGCGCGCCCCGCATAATAGATAGCTGGAAATGG
TCGATTCGTCTAGATGATATCGGGATCGTCGGAAATCGGGGACGTTTTAT
TATGCCCTGATGTAGAAAATTGCTGAGATCAGAAATAATATGCCAACAGA
GTTTCTACGCACGGTAGTATCGTTTTGGCCAGGTGAAGCCTTCGCTTGTT
TATTATTCGGCAGGTTTCTGTGCGATGTTAGAGTTGGGTACAATGGGCGT
AGGTTTTCGTGTTGTGTGCGTTTGTGATTACCTTAATTACGTCTCAAAAG
AAGGAAGAGGATGTGGATACCTGTCATCAGAGCACTTGGCCACGTTAAAC
CGCGATGAACCATTGCGCGGGCGATTATATCTCACACCATCGACCCAACT
CCTGCCATCGTAGGCGACGGAGTTCTTCGCGATGGAGAAAACTTGATATT
TAAATGTTGGCCACCCCGATCGTCTCCCGCCCTGTTCTGACGAAGGTTGA
TCACCGGGTGTCTCTAGGAGAAAGGGCCACCGAGAGCCTCCGCAAACACG
TGGTGGAACTCGCTGAGGAGGTTTCTCGCCTCGGGAACACCGTCCTCGAG
CTCAAAGGTGTCACGCAATCGCAAAAGGATAATGTGGAGCAAGTGCTAGT
GGACAGTAAGCGCAACAGGTGCGCCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig46355:2774..4051-

>mRNA_H-elongata_contig46355.11727.1 ID=mRNA_H-elongata_contig46355.11727.1|Name=mRNA_H-elongata_contig46355.11727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1266bp|location=Sequence derived from alignment at H-elongata_contig46355:2774..4051- (Himanthalia elongata Himel1 dioecious)
ATGACGCCAGAGATTGAAAGTGGTTGGGAGGCCAATATCGCTAGGCTCAT
AGAAAAGGCGAACGATACTCTTGCAGGATCAACCAAATCGCGATCATCCC
GCAACTACTACTACTCCAACAGTCGAGGAGGAAGCGGCCGCAGTGATGTT
GGAGCGTCGCCTTCTTCTTCCAAGCGGGTATCTTTCCCACTGAGTTCTGC
CCCGAGATTATCCCGAGGCGATCGAAGCGCTTCGTATCGAGTTGGAACAG
GGGGCTGGGAAACTTCATTATTTGATAACCACTCGCAGGTTCCGCTGCAT
CATCCCGACGGATTCCAGTCGAGCCTACCGCCGGCAGCCGCCCGGGTTGG
GTCCTTTTCGAGGTCGGCCGAGGTCAGGGTTAACGATGCCAGGATTGCTG
GCATGGAGGACAGAATCAAACTAGAAGTACAAACGTTGGTGCGAAGCGAT
ATGACGCCAGAGATTGAAAGTGGTTGGGAGGCCAATATCGCTAGGCTCAT
AGAAAAGGCGAACGATACTCTTGCAGGATCAACCAAATCGCGATCATCCC
GCAACTACTACTACTCCAACAGTCGAGGAGGAAGCGGCCGCAGTGATGTT
GGAGCGTCGCCTTCTTCTTCCAAGCGGGTATCTTTCCCACTGAGTTCTGC
CCCGAGATTATCCCGAGGCGATCGAAGCGCTTCGTATCGAGTTGGAACAG
GGGGCTGGGAAACTTCATTATTTGATAACCACTCGCAGGTTCCGCTGCAT
CATCCCGACGGATTCCAGTCGAGCCTACCGCCGGCAGCCGCCCGGGTTGG
GTCCTTTTCGAGGTCGGCCGAGGTCAGGGTTAACGATGCCAGGATTGCTG
GCATGGAGGACAGAATCAAACTAGAAGTACAAACGTTGGTGCGAAGCGAT
GTTGATCACCGGGTGTCTCTAGGAGAAAGGGCCACCGAGAGCCTCCGCAA
ACACGTGGTGGAACTCGCTGAGGAGGTTTCTCGCCTCGGGAACACCGTCC
TCGAGCTCAAAGGTGTCACGCAATCGCAAAAGGATAATGTGGAGCAAGTG
CTAGTGGACAGTAAGCGCAACAGGTGCGCCGTCGTTGATCACCGGGTGTC
TCTAGGAGAAAGGGCCACCGAGAGCCTCCGCAAACACGTGGTGGAACTCG
CTGAGGAGGTTTCTCGCCTCGGGAACACCGTCCTCGAGCTCAAAGGTGTC
ACGCAATCGCAAAAGGATAATGTGGAGCAAGTGCTAGTGGACAGTAAGCG
CAACAGGTGCGCCGTC
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