mRNA_H-elongata_contig4635.11726.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4635.11726.1
Unique NamemRNA_H-elongata_contig4635.11726.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Match: A0A6H5JFI0_9PHAE (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFI0_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 8.890e-98
Identity = 230/468 (49.15%), Postives = 264/468 (56.41%), Query Frame = 3 
Query:   27 MASYWVSQERYFCKYCKVWLSKHQASIRNHDQGKKHQAIVEEFFRKKREEKLKGASSESDLKREMDKIQKAALQAHEKDRELFGGAGSGLS----------------------------------------------------SPXXXXXXXXXXXXXXXXXXXRHPREGNENLDGYKDAVAKSGDTV--------------QGAWEEDGHWYRHGQASEGLYFTGGEGGKSSSSCISSKYTIHEDKLTVDSPCQMFVTSEGQWVDSIVLAIEARAE-----IAAADAGQ----RSTRLKVAYFEVGAEKETVVGGVEASALRLVAGEGGAWPPXXXXXXXXXXXXXXXXXXXDENTGLGGWQTVSVRLVDEAAEAEARRLKIEAKKERKRVRNDKADREKMLLDAMDADDAMGSYDPWGTGKYKGIDIKSEEFRGHDEVGSAAGAEGKEAGGSVAFKKRKGAGNREK 1205
            MASYWVSQERYFCKYCKVWLS HQASIRNHDQGKKH  IV EFFRKKRE+KLKGA SESDLKR+M++I+KAA  AHEKD  +FGGAG+G                                                        XXX XXXXXXXXXXXXXXX  P  GN ++    D  ++ G                  G +EE G WY  GQ                         IH DKL VD+ CQ F+ SEG WVD++VLA+    +      AA DA       + RL +AYFE GAEKETV+ GVEA+A+RL AGEGGAWP       XXXX         DENTGLGGWQTVSVR+VD AAEAEARR+K E K            REKML++AMDADDAMGSYDPWGTGKYKG +I ++  RG +E  +A        G +VAFKKRKG GN+ K
Sbjct:    1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMERIEKAAQLAHEKDLAMFGGAGAGSGLGAGSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDXXXXXXXXGSXXXRXXXXXXXXXXXXXXXXRPASGNPSVRA-GDVKSEEGAAAGREGXXXXXXXAAWDGVFEEGGQWYLDGQ-------------------------IHRDKLAVDAACQYFLNSEGLWVDAVVLALADSEQPPHDATAAGDASAGIMATTRRLDLAYFEAGAEKETVLRGVEAAAVRLPAGEGGAWPAPREMPPXXXX---------DENTGLGGWQTVSVRMVDVAAEAEARRVKKEVKXXXXXXXXXXXXREKMLVEAMDADDAMGSYDPWGTGKYKGFEIANDAPRGPEEE-AAGXXXXXXXGPAVAFKKRKGPGNKGK 432
[Close]
BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Match: A0A4D9CZ19_9STRA (U1-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ19_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.270e-34
Identity = 147/436 (33.72%), Postives = 210/436 (48.17%), Query Frame = 3 
Query:   27 MASYWVSQERYFCKYCKVWLSKHQASIRNHDQGKKHQAIVEEFFRKKREEKLKGASSESDLKREMDKIQKAALQAHEKDRELFGGA---------GSGLSSPXXXXXXXXXXXXXXXXXXXRHPREGNEN-----LDGYKDAVAKSGDTVQGAWEEDGHWYRHGQASEGLYFTGGEGGKSSSSCISSKYTIH----------EDKLTVDSPCQMFVTSEGQWVDSIVLAIEARAE------------IAAA---DAGQRSTRLKVAYFEVGAEKETVVGGVEASALRLVAGE---GGA--WPPXXXXXXXXXXXXXXXXXXXDENTGLGGWQTVSVRLVDEAAEAEARRLKIEAKKERKRVRNDKADREKMLLDAMDADDAMGSYDPWGTGKYKGIDIKSEEFRGHDE-VGSAAGAE-----GKEAGGSVAFKKRK 1184
            MA YW S  ++ CK+C VW+  ++ S R H+ G +H+  VEEFF+ +RE K +G+  + +L +E+ +I+KAA    EKD  +F  +                         XXXXXXXX  RHP     +     + G++D V K    V G  E+                TGG    S+++ +  +YT+           E +L   +PCQ++V  +  W ++IV  +E  A             I  A   D G+ +   + A  +   E + V  GV +  +RLV GE   GG    PPXXXXXX             DE+TGLGGWQTVSVR+VDE AE +A    + A+ +R R   D   R +ML +AM+ +DAM SYDP G G YKG+D+K     G    VG   GA      G +  G VAF++R+
Sbjct:    1 MADYWKSTPKHCCKFCNVWMDDNKTSRRLHEGGARHKQAVEEFFKAQREAKRQGSIGDGELSKELREIEKAAQAQAEKDAAMFKTSVVTTVEXXXXXXXXXRPPTFSLSSRXXXXXXXXGVRHPXXXXPHRVRGDVGGWRD-VEKEEKEVNGGSED---------------VTGG----SAAAEVEGRYTVDGVTYLEGKAVETRLVRGTPCQVWVEKDDAWREAIVSRVEVTAVPNTSLTLRKFSVILGARRPDGGKEAKEGQAAVTQREEEAKEVEEGVLSDRIRLVEGEHSMGGVDTLPPXXXXXXV------------DEDTGLGGWQTVSVRMVDEEAERKASEAAVRAESKR-RKEEDAQRRARMLAEAMEGEDAMSSYDPHGRGIYKGMDLKEGGTEGPGAIVGEVGGAALEVDLGGDQAGPVAFRRRR 403
[Close]
BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Match: M4BW33_HYAAE (Matrin-type domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BW33_HYAAE)

HSP 1 Score: 92.4 bits (228), Expect = 7.940e-17
Identity = 110/416 (26.44%), Postives = 178/416 (42.79%), Query Frame = 3 
Query:   27 MASYWVSQERYFCKYCKVWLSKHQASIRNHDQGKKHQAIVEEFFRKKREEKLKGASSESDLKREMDKIQKAALQAHEKD------RELFGGAGSGLSSPXXXXXXXXXXXXXXXXXXXRHPREGNENLDGYKDAVAKSGDTVQGAWEEDG------HWYRHGQASEGLYFTGGEGGKSSSSCISSKYTIHEDKLTVDSPCQMFVTSEGQWVDSIVLAIEARAEIAAADAGQRSTRLKVAYFEVGAE---------KETVVGGVEASALRL-----VAGEGGAWPPXXXXXXXXXXXXXXXXXXXDENTGLGGWQTVSVRLVDEAAEAEARRLK-IEAKKERKRVRNDKADREKMLLD-AMDADDAMGSYDPWGTGKYKGIDIKSEEFRGHDEVGSA-AGAEGKE--AGGSVAFKKR 1181
            M  YWVS+ER+ CKYC VW+   + SI++H+QG+KH+  VEE  +  R  K    +++ +++ ++ +I++AA    E+D      +     +G  ++ P                    H  EG        DAV+ +    +  W  +       +        EG+     +G  +    +  +   HE +L   S CQ++V  + QW+D++V   E        +      R  +AY    ++         K      V A  LR+     V  E                         DE TG+G W TV VR +DE+ EA A+R K +EA+  R   R +     + L D +   D+A+G+++PWG G YKG++I S    G D        + GKE  +G +V+FKKR
Sbjct:    1 MVDYWVSRERHCCKYCNVWMPSDKTSIKHHEQGRKHKEKVEEVLKLNRRIKSDTKNAQKEIQNQLQQIEEAAHAKFEQDLVRCNTKAQVSISGETVAPPPPPRRPTQIQAVFCSVG---HRNEG--------DAVSVARLEHRQPWAREALNRSNLNENEEVNEEEGVEEQDDKGVYAVKGIVYLEGKNHETQLDTGSACQIWVEEQEQWLDALV---EQATVHTIPNTELSFRRFTIAYMSPSSQECAKNKDKRKPVTEHNVLADRLRILLPANVTLEAAEKMVERWRNHGAAESPTRTPVVIDETTGMGEWNTVEVRQIDESLEAVAQREKEVEAETAR---RTEVQQCLESLEDLSSQGDNALGAFNPWG-GTYKGVNIDS----GADATAPGHVASSGKEMVSGLNVSFKKR 394
[Close]
BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Match: A0A836CFV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.190e-13
Identity = 77/249 (30.92%), Postives = 104/249 (41.77%), Query Frame = 3 
Query:  615 QWVDSIVLAIEARAEIAAADAGQRSTRLKVAYFEVGAEKETVVGGVEASALRLVAGEGGAWPPXXXXXXXXXXXXXXXXXXX----------------------------------------------------DENTGLGGWQTVSVRLVDEAAEAEARRLKIE----AKKERKRVRNDKADREKMLLDAMDADDAMGSYDPWGTGKYKGIDIK-----SEEFRGHDEVGSAAGAEG-KEAGGSVAFK 1175
            +W+D+++L +   A +A  +   R  R KVAYF  GAE ETVV  + +  LR+ AGE   W                                                                         DENTG+G WQTV V    +  E +AR+ K E    AK++R+     +A+R+  L  AM+ADDAMGSYDP GTG+YKG D++     +EE     +   AA  E  K A   VAFK
Sbjct:  336 EWIDALILEV---ALVAVPNTDIRLRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFSQE-ELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLERGGHDAEEVSAEQKAAIAAALEAEKGAAAPVAFK 580
[Close]
BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Match: F0WHY0_9STRA (Uncharacterized protein AlNc14C105G6187 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WHY0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.140e-11
Identity = 71/307 (23.13%), Postives = 123/307 (40.07%), Query Frame = 3 
Query:   27 MASYWVSQERYFCKYCKVWLSKHQASIRNHDQGKKHQAIVEEFFRKKREEKLKGASSESDLKREMDKIQKAALQAHEKDRELFGGAGSGLSSPXXXXXXXXXXXXXXXXXXXRHPR-----EGNENLDGYKDAVAKSGDTVQGAWEEDGHWYRHGQASEGLYFTGGEGGKSSSSCISSKYTIHEDKLTVDSPCQMFVTSEGQWVDSIVLAIEARAEIAAADAGQRSTRLKVAYFEVGAEKETVVGGVEASALRLVAGEGG----AWPPXXXXXXXXXXXXXXXXXXXDENTGLGGWQTVSVRLVDEA 920
            M  YW S ERYFCKYC +WL     S+R+H++ K+H   ++E  + KR+ K+K    + DLK+++D+I++ A   H +  E   G  S  ++                    R P+     +G  +   Y  AV +  + V    ++D   Y      + ++  G                 HE ++   S CQ++V    +W D++V   +A    +  +        ++ Y +    +      V A  LR++   G     A                      DE+TG+G W TV VR + ++
Sbjct:    1 MTEYWKSNERYFCKYCDIWLQGDSISVRHHEKSKRHLDRIQEKLKAKRQAKVKSEREDKDLKKQLDEIERTA---HARFAEDMKGKSSKYAN-----------NKAFTSKPFRRPKTKTFSDGTSSWPLYPVAVPEEKEPVDERKKDDLGVY---SVRDQVFLDG---------------KCHEGQIFAQSACQIWVEELEEWRDALV---DAAVRHSVPNTSLSLRHYQITYMDPSQNQVITEKEVTADRLRILLPAGTTLEEAEEMIRKAGCGGASDTTESHGPVDESTGMGEWSTVLVREIPDS 272
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BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Match: A0A397TAV1_9GLOM (Matrin-type domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TAV1_9GLOM)

HSP 1 Score: 70.9 bits (172), Expect = 2.480e-10
Identity = 30/79 (37.97%), Postives = 56/79 (70.89%), Query Frame = 3 
Query:   27 MASYWVSQERYFCKYCKVWLSKHQASIRNHDQGKKHQAIVEEFFRKKREEKLKGASSESDLKREMDKIQKAALQAHEKD 263
            M+ YWVSQ++++C+YC+++++ ++ S   H+QGKKH+  VE+F R  R    +    E   KRE+++I++AA++ ++KD
Sbjct:    1 MSEYWVSQQKHWCQYCRIYIADNKPSRTMHEQGKKHKENVEKFLRDIRRRDHENRKEEEKTKRELERIERAAMKQYKKD 79
[Close]
BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Match: A0A0M0JW63_9EUKA (C2h2 and c2hc zinc finger protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JW63_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-10
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 3 
Query:   27 MASYWVSQERYFCKYCKVWLSKHQASIRNHDQGKKHQAIVEEFFRKKREEKLKGASSESDLKREMDKIQKAALQ 248
            M  YWVSQ R++C+YC+++++ +++SI  H+ GKKH+ IVE   R  R    +    +SDL++EMDKI++ AL+
Sbjct:    1 MTEYWVSQARHWCEYCRIYIAGNKSSIAFHENGKKHKEIVELSLRDMRMRGRERRIEQSDLQKEMDKIERNALK 74
[Close]
BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Match: A0A087TIZ2_STEMI (WW domain-binding protein 4 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087TIZ2_STEMI)

HSP 1 Score: 71.2 bits (173), Expect = 4.240e-10
Identity = 35/85 (41.18%), Postives = 57/85 (67.06%), Query Frame = 3 
Query:   27 MASYWVSQERYFCKYCKVWLSKHQASIRNHDQGKKHQAIVEEFFRKKREEKLKGASSESDLKREMDKIQKAALQAHEKDRELFGG 281
            M+ YW S  R FC+ CK W + ++ASI  H++GK+H+  V++   + +++ LK    + +L+ EMDKI+KAAL+A+EKD +   G
Sbjct:    1 MSEYWKSLPRKFCETCKCWFADNKASIEFHERGKRHKENVQKRIHEIQKKGLKEYKKQKELEDEMDKIEKAALEAYEKDLQRSSG 85
[Close]
BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Match: A0A2C9L3S8_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9L3S8_BIOGL)

HSP 1 Score: 71.2 bits (173), Expect = 4.280e-10
Identity = 32/79 (40.51%), Postives = 56/79 (70.89%), Query Frame = 3 
Query:   27 MASYWVSQERYFCKYCKVWLSKHQASIRNHDQGKKHQAIVEEFFRKKREEKLKGASSESDLKREMDKIQKAALQAHEKD 263
            M+ YW S  R FC +CK W++ ++ S+  H++GK+HQ  VE   ++ R++ L+ ++ +  LK++MDK++KAAL+A +KD
Sbjct:    1 MSEYWKSVPRKFCDFCKCWITDNKPSVDFHERGKRHQENVELRLKEVRKKSLQKSADDEQLKKDMDKMEKAALEAFKKD 79
[Close]
BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Match: A0A7S1GZF4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GZF4_HEMAN)

HSP 1 Score: 65.9 bits (159), Expect = 1.450e-9
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 3 
Query:   27 MASYWVSQERYFCKYCKVWLSKHQASIRNHDQGKKHQAIVEEFFRKKREEKLKGASSESDLKREMDKIQKAALQAHEKDRE 269
            M  YWVSQ RY+CK+C+ WLS  +A+   HD G +H+  VE++ +  R+ K +   +  D ++EM  I +AA +  + D E
Sbjct:   26 MTEYWVSQARYWCKFCQCWLSDTKAARSKHDNGNRHKQSVEDWMKDNRKRKREERIANEDFEKEMRDIDRAAREQFKADVE 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4635.11726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFI0_9PHAE8.890e-9849.15Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
A0A4D9CZ19_9STRA6.270e-3433.72U1-type domain-containing protein n=2 Tax=Monodops... [more]
M4BW33_HYAAE7.940e-1726.44Matrin-type domain-containing protein n=1 Tax=Hyal... [more]
A0A836CFV0_9STRA4.190e-1330.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0WHY0_9STRA5.140e-1123.13Uncharacterized protein AlNc14C105G6187 n=1 Tax=Al... [more]
A0A397TAV1_9GLOM2.480e-1037.97Matrin-type domain-containing protein n=1 Tax=Glom... [more]
A0A0M0JW63_9EUKA3.850e-1043.24C2h2 and c2hc zinc finger protein n=1 Tax=Chrysoch... [more]
A0A087TIZ2_STEMI4.240e-1041.18WW domain-binding protein 4 (Fragment) n=1 Tax=Ste... [more]
A0A2C9L3S8_BIOGL4.280e-1040.51Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A7S1GZF4_HEMAN1.450e-938.27Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4635contigH-elongata_contig4635:2877..8360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.9
Seed ortholog evalue1.1e-85
Seed eggNOG ortholog2880.D7FI35
KEGG rclassRC00001
KEGG koko:K00354,ko:K13220,ko:K21768
KEGG ReactionR00282
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009791,GO:0009845,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015030,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0019222,GO:0031047,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0045292,GO:0046483,GO:0048519,GO:0048856,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG0150@1,KOG0150@2759
EC1.6.99.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, U1-type
Ec32 orthologEc-10_003350.1
Exons8
Model size1257
Cds size1230
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.9989026-CDS-H-elongata_contig4635:2876..31281622930767.9989026-CDS-H-elongata_contig4635:2876..3128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 2877..3128 -
1691679561.3768163-CDS-H-elongata_contig4635:2876..31281691679561.3768163-CDS-H-elongata_contig4635:2876..3128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 2877..3128 -
1622930768.0125113-CDS-H-elongata_contig4635:3428..35391622930768.0125113-CDS-H-elongata_contig4635:3428..3539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 3429..3539 -
1691679561.3894897-CDS-H-elongata_contig4635:3428..35391691679561.3894897-CDS-H-elongata_contig4635:3428..3539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 3429..3539 -
1622930768.029098-CDS-H-elongata_contig4635:4705..49131622930768.029098-CDS-H-elongata_contig4635:4705..4913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 4706..4913 -
1691679561.3976555-CDS-H-elongata_contig4635:4705..49131691679561.3976555-CDS-H-elongata_contig4635:4705..4913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 4706..4913 -
1622930768.0458171-CDS-H-elongata_contig4635:5652..57831622930768.0458171-CDS-H-elongata_contig4635:5652..5783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 5653..5783 -
1691679561.4110858-CDS-H-elongata_contig4635:5652..57831691679561.4110858-CDS-H-elongata_contig4635:5652..5783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 5653..5783 -
1622930768.06155-CDS-H-elongata_contig4635:6068..62331622930768.06155-CDS-H-elongata_contig4635:6068..6233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 6069..6233 -
1691679561.4203303-CDS-H-elongata_contig4635:6068..62331691679561.4203303-CDS-H-elongata_contig4635:6068..6233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 6069..6233 -
1622930768.0777562-CDS-H-elongata_contig4635:6362..65151622930768.0777562-CDS-H-elongata_contig4635:6362..6515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 6363..6515 -
1691679561.4286268-CDS-H-elongata_contig4635:6362..65151691679561.4286268-CDS-H-elongata_contig4635:6362..6515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 6363..6515 -
1622930768.096962-CDS-H-elongata_contig4635:7146..72811622930768.096962-CDS-H-elongata_contig4635:7146..7281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 7147..7281 -
1691679561.438712-CDS-H-elongata_contig4635:7146..72811691679561.438712-CDS-H-elongata_contig4635:7146..7281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 7147..7281 -
1622930768.1111178-CDS-H-elongata_contig4635:8259..83341622930768.1111178-CDS-H-elongata_contig4635:8259..8334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 8260..8334 -
1691679561.4484427-CDS-H-elongata_contig4635:8259..83341691679561.4484427-CDS-H-elongata_contig4635:8259..8334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4635 8260..8334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.124375-UTR-H-elongata_contig4635:8334..83601622930768.124375-UTR-H-elongata_contig4635:8334..8360Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4635 8335..8360 -
1691679561.4576886-UTR-H-elongata_contig4635:8334..83601691679561.4576886-UTR-H-elongata_contig4635:8334..8360Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4635 8335..8360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4635.11726.1prot_H-elongata_contig4635.11726.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4635 2877..8334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4635.11726.1

>prot_H-elongata_contig4635.11726.1 ID=prot_H-elongata_contig4635.11726.1|Name=mRNA_H-elongata_contig4635.11726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=410bp
MASYWVSQERYFCKYCKVWLSKHQASIRNHDQGKKHQAIVEEFFRKKREE
KLKGASSESDLKREMDKIQKAALQAHEKDRELFGGAGSGLSSPPPPPPPP
TPASIPPPPPPPRHPREGNENLDGYKDAVAKSGDTVQGAWEEDGHWYRHG
QASEGLYFTGGEGGKSSSSCISSKYTIHEDKLTVDSPCQMFVTSEGQWVD
SIVLAIEARAEIAAADAGQRSTRLKVAYFEVGAEKETVVGGVEASALRLV
AGEGGAWPPPPEPEAFPPLPPPPPPPSPDENTGLGGWQTVSVRLVDEAAE
AEARRLKIEAKKERKRVRNDKADREKMLLDAMDADDAMGSYDPWGTGKYK
GIDIKSEEFRGHDEVGSAAGAEGKEAGGSVAFKKRKGAGNREKGTLGKND
NADDIDTPNK
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mRNA from alignment at H-elongata_contig4635:2877..8360-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4635.11726.1 ID=mRNA_H-elongata_contig4635.11726.1|Name=mRNA_H-elongata_contig4635.11726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5484bp|location=Sequence derived from alignment at H-elongata_contig4635:2877..8360- (Himanthalia elongata Himel1 dioecious)
CACGTGATTCCGCCTCTGACCCCACGATGGCGTCCTACTGGGTATCCCAG
GAGAGATACTTCTGCAAGTACTGCAAGGTCTGGCTATCCAAACATCAGGC
GGTGAGTTCTCGTACTATCCTCTCTAAAGGAGTACGGAGACTCACGCGAA
TCAACAAAACCTACCAAGCCCTTTACTATAATACGTACCTTTCTTATTTC
AGCAAAAATGATGTTCATTAACCACTTGAGATCGACACGTGCAATCGAAG
GAGCAATGGTACCTGCCGCTGCTTACCCGCCATGAAACAGCATTTATGTT
TCCTTCATATACTGCAGTATAATGAGCATGGATATAAGTCATTCTCTCAG
AAACAGATCGAGCGCTCTGCGATCAACGTTTTGTCGCTGAATTGTCATGT
TCAAGCACCCGAGCAGCCTGTTACATAATCAAGATGCGGGTAGACTTCCA
GATAGGCCTTGCAGGACACTCCCATCTACCGTGTGCCATGTCTCTGACTT
GACAACTGCGACCCAATTTCCCCGGAATTCGTGTTATGAAGAGCCATAAC
CCGACGGGTGGATATCCTGGAGCTATATAGCCTTAACACGTGAAATAAAA
AACGAAAAGCTGGAACCCCGATCGCTCGGCCAGCAGTCTTCGAGTGAGAA
GTCAGCAGCATCAGCAGTTACGGGGACTCTTATTCGATTACAGTATTATT
AGTCGGATTCAAAATTCCCTGGCGCGATCACCCTTCTCCGCCAGGCGTTT
GTCGCGTCTAGACCCAGACGCTTTTGGTTTATGTGCCGAGACTGTCGGCA
TGTCCCGATGACGCGGGGTCACCCGGACAAGCGAGACAAGCGATCGTCTC
TCTCTCTATCTCTCTCTTTGCCGTTACCTGATTTAAATGATTTCATGAGT
GTGGAAACTCCAAATGTCGACTAAAATTATAAATAATGGTGTGCAGCTAA
ATAGTTAGCTAGCAGAGCTCTACGGTGACAAATGTAGTAGAAGAAGCATC
ATGCGATTGTGCGAGTCTACACAACACAAATACACACCCGCACCCGCACC
CACACCGCGTACACCACGTACACGGACAGAGCATCCGTAATCATGACCAA
GGCAAGAAGCACCAGGCTATCGTGGAGGAGTTCTTCCGGAAGAAGAGGGA
GGAGAAACTCAAGGGGGCGAGCAGCGAGTCCGATCTCAAGAGGGAAATGG
ATAAGATCCAGAAGGTCTGGGCATCCTATTGGCGAGCGGCAGAGCAGCGG
ACGCTCTTCTGGCCGCCGCGTGGAGTTTTAAATGCTGATATATAGTAGTA
GTATCGAGGGCGGGTGTTTACTGTACTATATGCTGTCACATTCAGCTCTT
AAGTTGTAAGCAGACAGCGAACACAACAGCCGTTGTGTGACCTAGGCTGT
TGGATGCACTCGATGGTAACGTAATGAGGTGTCGGAGAGGGGCAGGCCGC
CAGATGCGTTCACGTGATCTTTGTGTCCCTTCACCGCGTGGTACAACACT
CATACACCCGTCTGTCGTGTGTCGTGCCCGGTAACCTTCGCAAGCCAGCA
CGGTCGTAGTGACAATATATATTTTGCCCCTCCGGCAATCCCGCTTGAAC
GAAGCCGGACCGTTTCGTTTGCGATCGACTGCTCCGACATAATACGTCTT
CTCTGTTGTACCATGACAATGCGGTAGACGGCAGACGACGTAATGTCACT
TGCTCGTATATGTGTGNNNNNNNNNNATCTTTTTCTTTTTGGAAAAAAGA
AGAGTGGGGGGGGGGAAAAAGGATAGATCGCTTCGGTGTGGTTTGTGTGG
TGGGGGGGGGGGGGGGGGGGAGTCGCGTTTGGTTTCTTTCTACAGGCAGC
CCTCCAGGCTCACGAAAAAGACCGAGAGCTGTTCGGCGGTGCCGGCTCGG
GATTATCATCCCCCCCCCCACCTCCTCCACCGCCAACACCCGCCAGCATC
CCACCCCCTCCACCCCCGCCCCGACATCCGCGAGAGGGGAATGAAAATGT
CTACTCGGAGGAAATCCCTCCACCGCCTCCCCCTCCTGGGGGCCCTCCAA
GGATGACCGATGTACCTCCACCGCCGCCGCCGCTGCCGCTGCCGATACAC
GCAGCAGTGGTGAATATTGAAGGGAAGTTGGATGGTTATAAAGACGCAGT
GGCAAAATCCGGAGACACGGTACAAGGCGCGTGGGAAGAGGACGGGCACT
GGTACCGCCACGGGCAGGCGAGCGAAGGGTTATATTTTACTGGGGGGGAG
GGGGGGAAGAGCAGCAGCAGCTGTATCAGTAGTAAATATACTGTTCTAGA
ACTCTTTGTCGTAGTCTCCCTGCCAACGAGAGTCCCTGTTTCTGGTTATG
TATTCCACCCGTGACATTATCGGACATAGTAACGTCATCGACCTGTGTCT
GCTACTTGCACAACGCAAATACTGCGAGTGTTACAACTCGTGTTGTTTGA
GTGGAACAAGGGTAGGCGTTTGACTCTCCCCCTCCCACCTTCATAGTCAT
CCCCTCTCATGTATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCACC
CACCCCCGCGGTGATGCGGTGACGCAGATCCATGAGGACAAGCTGACGGT
GGACTCCCCATGCCAAATGTTTGTGACGTCGGAAGGTCAGTGGGTGGATT
CCATCGTGCTTGCGATCGAAGCTAGGGCCGAGATCGCCGCGGCAGACGCC
GGCCAAAGGTAAACCACCAACTAGATGAATCCAATGTCCGATGTTGCAGC
GGCCGGGAGGAGGATAAGCTGGAGGGAAAAAAGAATCCCCCCTCCCAATG
CAGCGCGTATGGTCGTTCTTGGTGCGCTAAGCTATTCTGTGGTCACGAGG
GGAGGGTTAGCCTACGCTACCTCAGGGCCGACTCTTCGCTGTAGCGGAGG
CAACGCAGGGTTTGCTGTAGAGAACACAGCACTAGGGCATGCAACTCCCT
CCTCAAGTCACCCGCCTATTTTTCTACAAAACTGATAAGAGCCTGAAGCA
GAGAAGTCTCACACGCTAGAGGTCTCTTGAAACGAGCGTGATCAAGGTTA
TCTTGTCAAAAGCTGCCGTGTTCTTCATCAGTTTCTGGGTTAACTTTTTT
CCAAGATTCCCCGAAAATGAAATTGAGTTGAGAGGGGAAGCTTATCTCCG
CAGGAAGCGCTTCTGTCTTATCCGCAGCACTTAGGACAAAATGGGATAGC
ATCCACAGAACCGGTTAATAAAAAAGCCAATAAATTCACCGAATACGCCT
GTCTCGGTTTTTCGTTTGAGAGAGAGAGAGAGACCCGTGAAGACCACCCC
CCGTCCATCCATCACTTCGTCCTCCCAAGGACACCAGCGAGAATAAGCGG
CCCGACATCTACAATAAGGTACGCAAAACTTTACTACCCCTCCTTCCCCT
ACTCTTGAGACAATAACAATATATGCCATGCCGCGCATTCGCCCCAGATC
CACCAGGTTGAAGGTGGCGTACTTCGAGGTTGGCGCCGAGAAGGAGACCG
TTGTCGGTGGGGTGGAAGCGTCGGCGCTGCGCCTCGTAGCCGGAGAGGGC
GGCGCGTGGCCCCCTCCCCCGGAGCCAGAGGCATTCCCCCCCCTACCTCC
ACCTCCGCCCCCACCTTCCCCGGACGAGAACACTGGCCTCGGTGGGTGGC
AGACGGTGAGTTGGGAACTGACCAAGGAAACAAGATGTATGGTATACTAA
AAGGAAATATATGATAATATATAGTGATATTCTGTTGGAGCTGTAGTTAT
ATATATTTCTCTTTAAAAGCTACCTGGTATGAAATCATTCCAACCCTCCG
AACATCCACGCCTTCTTAGCACCGTGAGAGGTGCAGTCTAGGGGACCAAC
TATAATCAGGTTCGAATGTGTACATTATATGTGATTGATTGTGTCCCCCA
ATAACAGTAAGTCCATCGGGTCAACGGAATAATGTCAGAGATCTCATTAT
TATCCCTTACACTTTACATTCTATTCTTCATGTGGGGACTATGACGCCTT
AGAGTATATAGCCTAGAGAGTGAGTTGTAGAGTAATACGATGAACGGTGG
GATATTATGAGCCATTATGGGATAAGAAGAGATTTATAAGATATTTATAT
TCATATATCAGTTAACTAGAATAGAAGGGATTTAAAGGTTATTAGGCTTA
GGCAAACCATGAACTCATTCCAACCCTACGAACATCGACGAATCTGGTTA
GGTGCGGATGTTGATATATTATGGTAATAAGTATATAAGTTGGAATGGTA
TTTTGCAGCCCCCCCTCCCCCCCCTTAAAACCCCTCCTTAAAAGACAAAG
ACAGAAAGAGAGAGGAGGAGGAAGGGGACAATCGGTATGTTGGTGGTGCA
CAGTACTGTATTGTAACAGGTACTATATTTAATAGGTATGATATTATGTT
TAATAGAGTAGAGTTTAATGCAATGAGCGATCTGAGATGCTGCTCTCTCT
CTCTCTCTCCATATATACTTGGTATATAGTGGATATACTAGATATAGTAA
CAAAATTGTAGAGTAATATTTTCGTTATACAGGTGGTCGTGTTGTTCCCC
AAGCTTGATATATTGTATTGTATTGCTTTCAGAATGGGATGGGTAGGTAG
ACCAATCGAACAATACCAATTTGATGGATGGATGGATGGATGATGGATAG
ACTGGATATCTAGAGAGATAGATAGGCAAATAAACGGATGAGGGTTTTTC
AATGTTATAATTCCTCTCCTTGATTTGATTAATGAATAGATATATATATC
TCTCTCTATCTCTCTCGAGCCCCCGGTGGTGATGTGCCTCGCCTCATCTC
GTCTCATCTCGTGGCACCCAGGTGAGCGTCCGACTGGTGGATGAGGCGGC
GGAGGCAGAGGCGAGACGGCTCAAGATCGAGGCGAAGAAGGAGAGAAAAC
GAGTGCGAAATGACAAGGCCGACAGAGAAAAGGTGCGTAGAGCAAGAGAG
GGAAGGAACCCCCCGCTCCTCCTCCCCCCCCCCCAACATACACATAAACA
TCTCCCCATCAGCTTCGGCCTGGCATGATTGCTCTTTCAAGAACTATCGC
CCCTGCTCTTCTTCCCTTCCCTACGTTATATCTATACTGTATCTATTTGC
CCCTCTATATCTCTCTCTTCGTGCGCGCTAATATGTGGTTGGATTCAAGA
GGGAGGGGGGGGGATATGTCTTCCAACCCCACTCACGACGAAGGCGTGTT
TGTGTGTGTGTGGGCGTGTGATGGGCGCGCAGATGCTTTTGGATGCCATG
GACGCAGACGACGCGATGGGGTCATACGATCCCTGGGGCACAGGAAAGTA
CAAGGGTATCGACATAAAGAGCGAGGAGTTTCGCGGACACGATGAAGTGG
GCAGTGCGGCGGGGGCAGAGGGGAAGGAGGCGGGGGGGTCCGTGGCCTTC
AAGAAGCGGAAGGGTGCCGGGAATAGAGAGAAGGGCACGCTCGGGAAAAA
CGACAACGCCGACGACATAGATACGCCAAATAAA
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Coding sequence (CDS) from alignment at H-elongata_contig4635:2877..8360-

>mRNA_H-elongata_contig4635.11726.1 ID=mRNA_H-elongata_contig4635.11726.1|Name=mRNA_H-elongata_contig4635.11726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2460bp|location=Sequence derived from alignment at H-elongata_contig4635:2877..8360- (Himanthalia elongata Himel1 dioecious)
ATGGCGTCCTACTGGGTATCCCAGGAGAGATACTTCTGCAAGTACTGCAA
GGTCTGGCTATCCAAACATCAGGCGATGGCGTCCTACTGGGTATCCCAGG
AGAGATACTTCTGCAAGTACTGCAAGGTCTGGCTATCCAAACATCAGGCG
AGCATCCGTAATCATGACCAAGGCAAGAAGCACCAGGCTATCGTGGAGGA
GTTCTTCCGGAAGAAGAGGGAGGAGAAACTCAAGGGGGCGAGCAGCGAGT
CCGATCTCAAGAGGGAAATGGATAAGATCCAGAAGAGCATCCGTAATCAT
GACCAAGGCAAGAAGCACCAGGCTATCGTGGAGGAGTTCTTCCGGAAGAA
GAGGGAGGAGAAACTCAAGGGGGCGAGCAGCGAGTCCGATCTCAAGAGGG
AAATGGATAAGATCCAGAAGGCAGCCCTCCAGGCTCACGAAAAAGACCGA
GAGCTGTTCGGCGGTGCCGGCTCGGGATTATCATCCCCCCCCCCACCTCC
TCCACCGCCAACACCCGCCAGCATCCCACCCCCTCCACCCCCGCCCCGAC
ATCCGCGAGAGGGGAATGAAAATGCAGCCCTCCAGGCTCACGAAAAAGAC
CGAGAGCTGTTCGGCGGTGCCGGCTCGGGATTATCATCCCCCCCCCCACC
TCCTCCACCGCCAACACCCGCCAGCATCCCACCCCCTCCACCCCCGCCCC
GACATCCGCGAGAGGGGAATGAAAATTTGGATGGTTATAAAGACGCAGTG
GCAAAATCCGGAGACACGGTACAAGGCGCGTGGGAAGAGGACGGGCACTG
GTACCGCCACGGGCAGGCGAGCGAAGGGTTATATTTTACTGGGGGGGAGG
GGGGGAAGAGCAGCAGCAGCTGTATCAGTAGTAAATATACTTTGGATGGT
TATAAAGACGCAGTGGCAAAATCCGGAGACACGGTACAAGGCGCGTGGGA
AGAGGACGGGCACTGGTACCGCCACGGGCAGGCGAGCGAAGGGTTATATT
TTACTGGGGGGGAGGGGGGGAAGAGCAGCAGCAGCTGTATCAGTAGTAAA
TATACTATCCATGAGGACAAGCTGACGGTGGACTCCCCATGCCAAATGTT
TGTGACGTCGGAAGGTCAGTGGGTGGATTCCATCGTGCTTGCGATCGAAG
CTAGGGCCGAGATCGCCGCGGCAGACGCCGGCCAAAGATCCATGAGGACA
AGCTGACGGTGGACTCCCCATGCCAAATGTTTGTGACGTCGGAAGGTCAG
TGGGTGGATTCCATCGTGCTTGCGATCGAAGCTAGGGCCGAGATCGCCGC
GGCAGACGCCGGCCAAAGATCCACCAGGTTGAAGGTGGCGTACTTCGAGG
TTGGCGCCGAGAAGGAGACCGTTGTCGGTGGGGTGGAAGCGTCGGCGCTG
CGCCTCGTAGCCGGAGAGGGCGGCGCGTGGCCCCCTCCCCCGGAGCCAGA
GGCATTCCCCCCCCTACCTCCACCTCCGCCCCCACCTTCCCCGGACGAGA
ACACTGGCCTCGGTGGGTGGCAGACGATCCACCAGGTTGAAGGTGGCGTA
CTTCGAGGTTGGCGCCGAGAAGGAGACCGTTGTCGGTGGGGTGGAAGCGT
CGGCGCTGCGCCTCGTAGCCGGAGAGGGCGGCGCGTGGCCCCCTCCCCCG
GAGCCAGAGGCATTCCCCCCCCTACCTCCACCTCCGCCCCCACCTTCCCC
GGACGAGAACACTGGCCTCGGTGGGTGGCAGACGGTGAGCGTCCGACTGG
TGGATGAGGCGGCGGAGGCAGAGGCGAGACGGCTCAAGATCGAGGCGAAG
AAGGAGAGAAAACGAGTGCGAAATGACAAGGCCGACAGAGAAAAGGTGAG
CGTCCGACTGGTGGATGAGGCGGCGGAGGCAGAGGCGAGACGGCTCAAGA
TCGAGGCGAAGAAGGAGAGAAAACGAGTGCGAAATGACAAGGCCGACAGA
GAAAAGATGCTTTTGGATGCCATGGACGCAGACGACGCGATGGGGTCATA
CGATCCCTGGGGCACAGGAAAGTACAAGGGTATCGACATAAAGAGCGAGG
AGTTTCGCGGACACGATGAAGTGGGCAGTGCGGCGGGGGCAGAGGGGAAG
GAGGCGGGGGGGTCCGTGGCCTTCAAGAAGCGGAAGGGTGCCGGGAATAG
AGAGAAGGGCACGCTCGGGAAAAACGACAACGCCGACGACATAGATACGC
CAAATAAAATGCTTTTGGATGCCATGGACGCAGACGACGCGATGGGGTCA
TACGATCCCTGGGGCACAGGAAAGTACAAGGGTATCGACATAAAGAGCGA
GGAGTTTCGCGGACACGATGAAGTGGGCAGTGCGGCGGGGGCAGAGGGGA
AGGAGGCGGGGGGGTCCGTGGCCTTCAAGAAGCGGAAGGGTGCCGGGAAT
AGAGAGAAGGGCACGCTCGGGAAAAACGACAACGCCGACGACATAGATAC
GCCAAATAAA
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