mRNA_H-elongata_contig46347.11725.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46347.11725.1
Unique NamemRNA_H-elongata_contig46347.11725.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig46347.11725.1 vs. uniprot
Match: D8LL17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL17_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 2.560e-77
Identity = 141/226 (62.39%), Postives = 168/226 (74.34%), Query Frame = 1 
Query:    1 RTAGCLRLIQDFLGMPKDLFTTEAAMTSARFEQKRAELLLYKLLNQVDSPAARMKRLLMRDFERDASNASDVASLMDVTSSRLRSLKEFVLDQHEQQLFAFAEAPISSASASGSASISREARRATTRKAVRRQVELSLYLPLRRCLWKELLLRLKGPARRLQKAIKALRQSPPSVFGVENPGVFTAREWGPAIETMGQATRRALPTDQIEGLHRAAEHIAALHSSL 678
            R +G L ++QDFLG P+DLF  + A++ A  +QKRAELLLY+LLNQ DSPAARMK LLMRDFE D S A DV SLM   SSRLR L++FVLD HE+QL             S  A  + E R A  RKAVRRQVELSLYLPLRRCLWKEL  R++ PAR+L++AI+ALR+SPP+VFG+E  GV  ++EWGP  E MGQATR  LPTDQI+GL RAAEH+ ALH+SL
Sbjct:  569 RCSGALHIVQDFLGRPEDLFNADLALSPALRDQKRAELLLYRLLNQADSPAARMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQL-------------SSCAYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRRSPPAVFGLETLGVLASKEWGPVKEVMGQATRNVLPTDQIDGLRRAAEHLTALHASL 781
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46347.11725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL17_ECTSI2.560e-7762.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46347contigH-elongata_contig46347:482..3524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size678
Cds size678
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46347.11725.1prot_H-elongata_contig46347.11725.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46347 482..3524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.8657813-CDS-H-elongata_contig46347:481..6461622930767.8657813-CDS-H-elongata_contig46347:481..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 482..646 +
1691679561.317516-CDS-H-elongata_contig46347:481..6461691679561.317516-CDS-H-elongata_contig46347:481..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 482..646 +
1622930767.8790777-CDS-H-elongata_contig46347:1371..14671622930767.8790777-CDS-H-elongata_contig46347:1371..1467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 1372..1467 +
1691679561.3275764-CDS-H-elongata_contig46347:1371..14671691679561.3275764-CDS-H-elongata_contig46347:1371..1467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 1372..1467 +
1622930767.8909624-CDS-H-elongata_contig46347:1968..21061622930767.8909624-CDS-H-elongata_contig46347:1968..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 1969..2106 +
1691679561.3394146-CDS-H-elongata_contig46347:1968..21061691679561.3394146-CDS-H-elongata_contig46347:1968..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 1969..2106 +
1622930767.902594-CDS-H-elongata_contig46347:2486..25631622930767.902594-CDS-H-elongata_contig46347:2486..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 2487..2563 +
1691679561.348968-CDS-H-elongata_contig46347:2486..25631691679561.348968-CDS-H-elongata_contig46347:2486..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 2487..2563 +
1622930767.9203138-CDS-H-elongata_contig46347:3071..32191622930767.9203138-CDS-H-elongata_contig46347:3071..3219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 3072..3219 +
1691679561.357856-CDS-H-elongata_contig46347:3071..32191691679561.357856-CDS-H-elongata_contig46347:3071..3219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 3072..3219 +
1622930767.9414265-CDS-H-elongata_contig46347:3470..35241622930767.9414265-CDS-H-elongata_contig46347:3470..3524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 3471..3524 +
1691679561.3662121-CDS-H-elongata_contig46347:3470..35241691679561.3662121-CDS-H-elongata_contig46347:3470..3524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46347 3471..3524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46347.11725.1

>prot_H-elongata_contig46347.11725.1 ID=prot_H-elongata_contig46347.11725.1|Name=mRNA_H-elongata_contig46347.11725.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
RTAGCLRLIQDFLGMPKDLFTTEAAMTSARFEQKRAELLLYKLLNQVDSP
AARMKRLLMRDFERDASNASDVASLMDVTSSRLRSLKEFVLDQHEQQLFA
FAEAPISSASASGSASISREARRATTRKAVRRQVELSLYLPLRRCLWKEL
LLRLKGPARRLQKAIKALRQSPPSVFGVENPGVFTAREWGPAIETMGQAT
RRALPTDQIEGLHRAAEHIAALHSSL
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mRNA from alignment at H-elongata_contig46347:482..3524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46347.11725.1 ID=mRNA_H-elongata_contig46347.11725.1|Name=mRNA_H-elongata_contig46347.11725.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3043bp|location=Sequence derived from alignment at H-elongata_contig46347:482..3524+ (Himanthalia elongata Himel1 dioecious)
AGGACCGCCGGGTGCCTCCGTCTGATCCAAGACTTCTTGGGGATGCCGAA
GGACCTCTTCACGACAGAGGCCGCCATGACCTCTGCTCGTTTCGAACAGA
AGCGGGCCGAGCTACTGCTCTACAAGCTTCTGAACCAGGTCGACTCCCCC
GCGGCAAGGATGAAGGTATTAATAGTATTATTAACATAATTTATGGCAGG
GGGAAGAGGAAGAAGGCACGCTTTTATTATTTTAAAACATATGAACTCAT
TCAAACCCTCCGAAGATCCACACCATCTTAACTCCATGAGAGGTGCAGTC
GAGGGGACCAACTATCGCCAGGTTCGAATGTGGACATTACTACATTTAAG
CACAAAATCGTCATAATATATGATTATTTGTGTTCCCCGGTGGTAAATTC
ATCGGGTCAACGGTTAATGATGTCGGGGATCCCGTCATTGTCCCGTACAC
TTTTTATTATTGATGACGTCATTATATGGGGACTATGACGCCAAACCAGA
ATATTTATTTGGTGGTTAGGAAGGGTTAATCATATTCATCACGTGGTTGC
ATTGTTGATGCGTTTCGATTGATCTCGGATTGTAGCTAGTACTACACTAT
TCATCGTATGGGGACACCTTGTTGTAGATTGCCGCGGGGTTTCACAAGAT
AATTCAGGTTAATAGCTTTGAAAAAAAAAAATATATATATATATAGGAAC
CTGCGCTTTATAGAGGACACGATTTCCTTCCAGCGAGAGAGAAAGAGAGA
AAGAAAGAGCACGTGACCTGCGCGTCAGCTTCCGAACAAAATTCACCCTC
CACTTTATTTCCTCCTGCCATTTGCTTTTTGCGGTGTTTCCTATAATCGT
CACCGCAATCGCAATCGATATCGACACCGATCTCGAGCAGCGCCTGTTGA
TGAGAGACTTTGAGAGGGATGCCTCCAACGCCTCGGACGTGGCGTCGCTG
ATGGACGTAACTTCCTCGCGCCTTCGGAGCCTCAAGGTCCGCATCCTCGA
ACAATGACGTAATGCTCAAGCGCAGCAGCAGCAGTAGCAGTAGCACACGT
GATGAAGGGCTACCCTGACACAAAAATATGTATTTTTGTGCGTCGTACAG
ACGACCAAGGCAGGGCAGGACATGTCATTACATGACAGGACAGTTTGGAA
AATACCACTTCAGGGCGAAACGTTTAACTGCCCTAGAGTATACCTTGCCT
CCTTCTTATCGTCGAAAATAAGTTCAAAAGGACGCCCCCTCCTGAAACCT
TCTAGACGCTACTTGATCGAGCTATCGAGATCGTACCGCCGTGCCTCTCC
TCGTGAGCATGCGGTTGTCCCCAATGCATCCACCGCCGTTAACTGAGTTT
GAATCTCTGTTTTGTTTTTGTTTTTGACAATACTTCCTGTCTTCTCTCTC
TCTCTCCTCTGAAATATGACGTCATGTCGTGGCGCGGGTGTGCACTGTTC
TCCCCCCCCCCACCCCCCACTGTCTGTGCTCTCGCAGGAGTTTGTCCTGG
ACCAGCACGAACAGCAGCTCTTCGCGTTCGCAGAGGCTCCAATTTCTTCC
GCTTCCGCTTCCGGTTCGGCTTCCATCTCGAGGGAGGCCAGGCGCGCCAC
GACTCGCAAGGCAGTGCGGCGCCAGGTTAGCGCGGTCGCGAGAGGCGAAA
TCTCCCGCGCACGGTCACCAGTGTTTTTGTTTCCCTTGGGGAGCAGCTGC
AGCCCGCCACCTTCCCCTCGCCCCCGTCTCGCGTGTATCGTGCATGAGCA
CCCTTTCGAGCCAGTAGTTGTGTTAACGTGGAGGAAGGAAAGAGAGAGGG
GGCGATAGTCAAAAGGGCACGATGTGCGCGTGTGTGACATCAGCTGTTTT
GACAGTCAAGGTACCTATGCTTCAGCTTTTTTGGGTGCGCATTACCATGT
CACAAGTTCGCCAGCACAGACGCCAGGAACGGACGATCATGCCTCACCTC
GCTGTGTTTTTTGTGTGAGTGTGAGTGTGTCCACTCCCCCCGCCTGTCCA
CGTAGGTGGAGCTGTCCCTCTACCTTCCCCTTCGGCGATGTCTGTGGAAG
GAGCTCTTGTTGAGGCTCAAAGGTCCTGCAAGGTATTATGGGTCTAGAAA
CTCTGTGTTTTTATATCTCGGGAAAGTTGCGGAAAATCTACTGCTTCCCC
TCTTTTTCTAGCGGTTTCCTTTGTAGTAGACTTTGCCTTTACTGCATTGT
CCAGAAAACGCCTCTTTATGGATTTACAGTGTGTTTGTGTTTGTGTGTTT
CGGATCAGGGTGCAGTAAAAGCATCATCGTTTGACTCGAGTCCACGGGAA
GTGCTTCTAGTGCTAGACTGGTATACAGCTTAAAGTGTCTTCCACAGCAC
ATAATCATCAGTCTTCGACGAGGCGCGTAACAAGTCACGCCGTTGTCGAT
GACCCAGCGCCTATGTCCCAGAATCCCCGATCCCCTTAAAAAAAAACATA
TGTTTCATCTCCGGTGCAATGGAGATCTCATGAAAGGAAGAGACCCTTCT
CGGGTTCATATTAGTCATCATTCCTGATTTACGGGACGGACGGGGATAAG
GACCCCCCCCTCCCCCCGCTTCCCTCTTGTCTATTCGCAGGCGCCTTCAG
AAAGCTATCAAAGCCTTACGGCAGTCTCCCCCCTCCGTCTTCGGAGTGGA
AAACCCTGGGGTATTCACCGCGAGGGAGTGGGGCCCGGCGATCGAGACCA
TGGGGCAAGCGACGAGGCGGGCGTTGCCCACGGATCAGGTAGCTCCTCTA
ACCTTGTTTGCCGAGTAGTAGAGCTAAGCAACGCTGTACCACCGTGTAGG
CCTATGTCAAGTTACTTACCGTTGTTCCGCGGCTCATCCCTTCGGCGCCT
ACGCTAGCGGGTAACCTCCTTGCTTGCGCGTCGCGTCCTGCACGTGATCG
ATTGTTCTTTTATCTACGAACCGCGCAATTCCTCCAAACAAACATTTTGC
CTTAATGTCTAGTTTTGTATTTTTTTTCTTGTCGGAAAGATCGAGGGTCT
CCACCGGGCTGCCGAGCACATCGCGGCGCTCCACTCCTCTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig46347:482..3524+

>mRNA_H-elongata_contig46347.11725.1 ID=mRNA_H-elongata_contig46347.11725.1|Name=mRNA_H-elongata_contig46347.11725.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig46347:482..3524+ (Himanthalia elongata Himel1 dioecious)
AGGACCGCCGGGTGCCTCCGTCTGATCCAAGACTTCTTGGGGATGCCGAA
GGACCTCTTCACGACAGAGGCCGCCATGACCTCTGCTCGTTTCGAACAGA
AGCGGGCCGAGCTACTGCTCTACAAGCTTCTGAACCAGGTCGACTCCCCC
GCGGCAAGGATGAAGAGGACCGCCGGGTGCCTCCGTCTGATCCAAGACTT
CTTGGGGATGCCGAAGGACCTCTTCACGACAGAGGCCGCCATGACCTCTG
CTCGTTTCGAACAGAAGCGGGCCGAGCTACTGCTCTACAAGCTTCTGAAC
CAGGTCGACTCCCCCGCGGCAAGGATGAAGCGCCTGTTGATGAGAGACTT
TGAGAGGGATGCCTCCAACGCCTCGGACGTGGCGTCGCTGATGGACGTAA
CTTCCTCGCGCCTTCGGAGCCTCAAGCGCCTGTTGATGAGAGACTTTGAG
AGGGATGCCTCCAACGCCTCGGACGTGGCGTCGCTGATGGACGTAACTTC
CTCGCGCCTTCGGAGCCTCAAGGAGTTTGTCCTGGACCAGCACGAACAGC
AGCTCTTCGCGTTCGCAGAGGCTCCAATTTCTTCCGCTTCCGCTTCCGGT
TCGGCTTCCATCTCGAGGGAGGCCAGGCGCGCCACGACTCGCAAGGCAGT
GCGGCGCCAGGAGTTTGTCCTGGACCAGCACGAACAGCAGCTCTTCGCGT
TCGCAGAGGCTCCAATTTCTTCCGCTTCCGCTTCCGGTTCGGCTTCCATC
TCGAGGGAGGCCAGGCGCGCCACGACTCGCAAGGCAGTGCGGCGCCAGGT
GGAGCTGTCCCTCTACCTTCCCCTTCGGCGATGTCTGTGGAAGGAGCTCT
TGTTGAGGCTCAAAGGTCCTGCAAGGTGGAGCTGTCCCTCTACCTTCCCC
TTCGGCGATGTCTGTGGAAGGAGCTCTTGTTGAGGCTCAAAGGTCCTGCA
AGGCGCCTTCAGAAAGCTATCAAAGCCTTACGGCAGTCTCCCCCCTCCGT
CTTCGGAGTGGAAAACCCTGGGGTATTCACCGCGAGGGAGTGGGGCCCGG
CGATCGAGACCATGGGGCAAGCGACGAGGCGGGCGTTGCCCACGGATCAG
GCGCCTTCAGAAAGCTATCAAAGCCTTACGGCAGTCTCCCCCCTCCGTCT
TCGGAGTGGAAAACCCTGGGGTATTCACCGCGAGGGAGTGGGGCCCGGCG
ATCGAGACCATGGGGCAAGCGACGAGGCGGGCGTTGCCCACGGATCAGAT
CGAGGGTCTCCACCGGGCTGCCGAGCACATCGCGGCGCTCCACTCCTCTC
TTATCGAGGGTCTCCACCGGGCTGCCGAGCACATCGCGGCGCTCCACTCC
TCTCTT
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