mRNA_H-elongata_contig46336.11724.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46336.11724.1
Unique NamemRNA_H-elongata_contig46336.11724.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Match: A0A6H5KL38_9PHAE (COP9 signalosome complex subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL38_9PHAE)

HSP 1 Score: 373 bits (958), Expect = 1.150e-124
Identity = 183/281 (65.12%), Postives = 218/281 (77.58%), Query Frame = 3
Query:  105 EVMRLPTN-NDADLIRMNGLLAKQGETLQEIGRNFSQIVRSDGGGSAVAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLTPCDRTPFIDVVLAFLEHCQWRHVVIAPKYVGDVCRKFAHVCILEGRVGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRHFYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLISSGNLPTIPKYAPNVVTRHLKSHATAYETLGRCCQV 944
            ++  LP + ++A L  ++G L KQG+ LQE+ + FSQ    DGG    AA SPL+  AM+HTK ASLGSLHLLAAQAEVLTP +   FIDV LAFLEHC W  V IAPK++G VC+KF  VCI EGR  EA+LPLR+AA +M    SSLTP+HPEFLQCCI AKCY +GARFMD++P+FGVEP AT LTPVHFLRHFYYGG++Y+G K+W+DA DSF+MLL  PA+VLSSLVVEGYKKM+LVSLI SG +P +PKYA N VTRHLKSH + YE L  C QV
Sbjct:   10 DLQGLPADASNAQLKTIHGALTKQGDALQEVAKTFSQTTDQDGG--VAAANSPLIAAAMEHTKLASLGSLHLLAAQAEVLTPQEVPAFIDVTLAFLEHCNWHQVTIAPKHLGSVCKKFGQVCISEGRASEALLPLRSAAIKMDGDRSSLTPLHPEFLQCCIAAKCYSLGARFMDDRPIFGVEPVATGLTPVHFLRHFYYGGIVYVGAKQWKDALDSFLMLLTIPANVLSSLVVEGYKKMMLVSLIISGKVPPLPKYASNSVTRHLKSHTSDYEALVSCFQV 288          
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Match: A0A7S2ML15_9STRA (COP9 signalosome complex subunit 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ML15_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.700e-44
Identity = 99/264 (37.50%), Postives = 147/264 (55.68%), Query Frame = 3
Query:  180 TLQEIGR------NFSQIVRS---DGGGSAVAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLTPCDRTPFIDVVLAFLEHCQWRHVVIAPKYVGDVCRKFAHVCI-LEGR-VGEAILPLRTAAYRM---GSATSSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRHFYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLISSGNLPTIPKYAPNVVTRHLKSHATAYETLG 929
            T++EIGR      N  +++     +GG   + A +      +D T+  SLG LH+LAAQ+ VL   D  PF +    F+  C    +    K   DVCRKF  V   L G  V  AI PL+ A  ++        +LTP+H + LQ C++  CY +G RFMDE PV  V PK   L  + +LR++YY G++ +G K+   A +SF++ +  PA+ LS++ VE YKK++LV+LI +G L T+P Y  +VV+RHLK+    Y  + 
Sbjct:   13 TVEEIGRLQENLKNAHEVLHDHALNGGLLQIVAAT------LDQTRH-SLGVLHMLAAQSTVLAEADMQPFFNQTRIFIALCDPVQIQKDTKLFVDVCRKFTEVATKLRGPCVMYAIKPLQRAVQKLLADNERPHTLTPIHADLLQLCLLGGCYHIGERFMDEFPVLYVSPKTMRLVALDYLRYWYYTGMVCVGLKKMPRAIESFLLAITMPATALSTVAVESYKKLLLVNLIENGELVTLPSYTCSVVSRHLKALTKPYHDIA 269          
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Match: A0A0D6QYT4_ARACU (PCI domain-containing protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6QYT4_ARACU)

HSP 1 Score: 148 bits (373), Expect = 1.200e-37
Identity = 93/270 (34.44%), Postives = 142/270 (52.59%), Query Frame = 3
Query:  123 TNNDADLIRMNGLLAKQGETLQEIGRNFSQIVRSDGGGSAVAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLTPCDRTP-FIDVVLAFLEHCQWRHVVIAPKYVGDVCRKFAHVCILEGRVGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRHFYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLISSGNLPTIPKYAPNVVTRHLKSHATAYETLG 929
            ++++ADL  + GLL +    L+E                  A +S LL   +D  K  SLG L++L A      P ++   F+ +   F+  C    + IAP+   ++C+KF           +AI PL+TA  ++  ++  LT +HP+FL  C++AKCYK G   ++E  +F ++       P  FL + YYGG++YIG KR+  A + F   + AP + L+++ VE YKK VLVSLI +G +P  PKY P VV R+LKS    Y  L 
Sbjct:   15 SDSNADLTHLQGLLKEYESVLRE---------------QPCARLSSLLSQ-LDPAKH-SLGYLYVLEAHTSCSIPREQVEGFLLIAANFINSCSAEQICIAPEKFTNLCKKFKEQVTDLQVPKQAIFPLQTAVRKLQPSSEHLTSLHPDFLLVCLLAKCYKAGLSILEED-IFEIDQ------PRDFLLYCYYGGMVYIGLKRFSKALEFFQHAITAPMTSLTAITVEAYKKYVLVSLIHTGQVPAFPKYTPAVVQRNLKSCTQPYIELA 260          
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Match: A0A1Y1IEP4_KLENI (COP9 signalosome subunit CSN3 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEP4_KLENI)

HSP 1 Score: 146 bits (369), Expect = 5.380e-37
Identity = 81/219 (36.99%), Postives = 119/219 (54.34%), Query Frame = 3
Query:  291 RASLGSLHLLAAQAEVLTPCDRTPFIDVVLAFLEHCQWRHVVIAPKYVGDVCRKFAHVCILEGRVGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRHFYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLISSGNLPTIPKYAPNVVTRHLKSHATAYETLGRCCQVR 947
            R SL  L LL AQ  V  P     FI+   AFL+ C    + IA +    VC K     ++  +    +LPLRTA  ++   +  LTP H +FL   +++K Y  G   + E+ +F V+ K T + P  FL + YYGG++YIG KR++ A +     ++APA VL+++ +E YKK V+V L+  G LPT  KY P +V + LKS++  Y  LG     R
Sbjct:   54 RYSLAWLFLLDAQQGVTQPDKADAFINRCTAFLKACHQDQIRIAVEKFNSVCFKLKDCVLVLNQPARGVLPLRTAIKKLQPTSEHLTPQHADFLLLVVLSKIYNAGLPVLAEE-IFEVDAKKTGIAPRDFLLYCYYGGMVYIGMKRFKKALELLGHAISAPAQVLNAITLEAYKKFVVVHLLVDGQLPTFQKYTPTIVQKLLKSNSQPYIDLGNAYATR 271          
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Match: A9SV28_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SV28_PHYPA)

HSP 1 Score: 144 bits (363), Expect = 3.610e-36
Identity = 78/217 (35.94%), Postives = 121/217 (55.76%), Query Frame = 3
Query:  282 HTKRASLGSLHLLAAQAE-VLTPCDRTPFIDVVLAFLEHCQWRHVVIAPKYVGDVCRKFAHVCILEGRVGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRHFYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLISSGNLPTIPKYAPNVVTRHLKSHATAYETLG 929
            H  + SLG L+LL AQ+   LT      F+ +  +FL  C    + +AP     VCR+     +       AILPL+ A  ++  ++  LT +H ++LQ C+++KCYK     +++  +F ++ K T+L P  FL + YYGG+IYIG K++  A + F   + AP + L+++ +  + K VLVSLI +G +P  PKY P VV R+LKS    Y  L 
Sbjct:   50 HPTKHSLGYLYLLEAQSSGTLTREQSDSFLALASSFLTVCAPEQIRLAPDKFNSVCRRLRDQAMHLHEPMRAILPLQCAIRKLQPSSEYLTAIHADYLQMCLLSKCYKASLSILEDD-IFEIDQKKTSLVPRDFLLYCYYGGMIYIGLKKFSKALEFFQHAITAPTTALNAITIAAFGKYVLVSLIQNGQVPPFPKYTPAVVLRNLKSCVQDYLDLA 265          
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Match: A0A2R6XR65_MARPO (PCI domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XR65_MARPO)

HSP 1 Score: 144 bits (362), Expect = 5.200e-36
Identity = 86/235 (36.60%), Postives = 129/235 (54.89%), Query Frame = 3
Query:  237 SAVAAVSPLLVHAM---DHTKRASLGSLHLLAAQAE-VLTPCDRTPFIDVVLAFLEHCQWRHVVIAPKYVGDVCRKFAHVCILEGRVGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRHFYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLISSGNLPTIPKYAPNVVTRHLKSHATAYETLG 929
            S +A  +P L++A+   D  K  SLG L+LL A +   L+      F+     FL  C    + +A      +CR+     +       AILPL  A  +   ++  LTP+H ++L  C+++KCYK G   +++  +F ++ K T L P  FL H YYGG++YIG KR+  A + F   + APA+VL+++ +  YKK VLV LI +G +P  PKY P+VV R+LKS A  Y  L 
Sbjct:   34 SVLAVHAPRLLYALAALDPAKH-SLGYLYLLEAHSSGTLSKEQAGSFVVAASNFLTVCSADQIRLAIDKFNILCRRLKDQAMQMMEPSCAILPLYAAIRKSQPSSEYLTPLHADYLLLCLLSKCYKAGLNILEDD-IFEIDQKRTGLMPRDFLLHCYYGGMLYIGLKRFGKALEFFQHAITAPATVLNAITIAAYKKFVLVCLIHNGQVPPFPKYTPSVVQRNLKSCAQDYFDLA 266          
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Match: A0A2P6VHG3_9CHLO (COP9 signalosome complex subunit 3 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VHG3_9CHLO)

HSP 1 Score: 140 bits (354), Expect = 7.550e-35
Identity = 88/244 (36.07%), Postives = 129/244 (52.87%), Query Frame = 3
Query:  213 IVRSDGGGSAVAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLTPC--DRTPFIDVVLAFLEHCQWRHVVIAPKYVGDVCRKFAHVCILEGRVGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRHFYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLISSGNLPTIPKYAPNVVTRHLKSHATAYETLGRCC 938
            ++R+  GG  +AAV+ L   A  H    SLG L+LL A+A        DR  F++    FL  C  R V +AP+    +CR     C++       + PLR A   +  +T  L+P+H +F Q C+++KCY      +D   V+ V+P  TA+TP   L + YYGGL+ IG +R+  A +  +  L AP  V +++     KK +LVSLI SG +P +PKYA  VV+R  KS    Y  L + C
Sbjct:   35 VMRASAGG-LLAAVAAL--DAAAH----SLGCLYLLEAKARTANAQQGDRD-FLESACTFLPACTPRQVRMAPEKFVSLCRAVKAHCLVLDAPKRGVAPLRAAVAALCPSTDHLSPIHADFFQLCLLSKCYSAAGPVLDAD-VYTVDPAKTAVTPTDVLLYCYYGGLLEIGRRRYAHALELLLTALTAPTMVPNAITAACAKKYMLVSLIHSGAVPQLPKYAAPVVSRMFKSECAPYAELAKLC 269          
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Match: A0A6V7PNK9_ANACO (PCI domain-containing protein n=5 Tax=Ananas comosus TaxID=4615 RepID=A0A6V7PNK9_ANACO)

HSP 1 Score: 140 bits (352), Expect = 1.220e-34
Identity = 83/252 (32.94%), Postives = 134/252 (53.17%), Query Frame = 3
Query:  183 LQEIGRNFSQIVRSDGGGSAVAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLTPCDRTP-FIDVVLAFLEHCQWRHVVIAPKYVGDVCRKFAHVCILEGRVGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRHFYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLISSGNLPTIPKYAPNVVTRHLKSHATAYETLGRC 935
            L  + +     +RS G G A     PLL+H +D +K  SLG L++L A        D+   F+  V+ F+  C    + +AP     VC++     +      + + PLRTA  ++ +++  LT +H +FL  CI+AK YK G   +++  +   +P+   L       ++YYGG+IYIG KR+R A +    ++ AP + L+++ VE YKK +LVSLI +G +P+ PKY  +   R+LK+H   Y  L  C
Sbjct:   24 LHSLLKQSEDALRSQGPGLA-----PLLLHQLDPSKH-SLGYLYILEAYLSGPISSDQAGGFLLSVVDFINSCSGDQIRLAPDKFIQVCKRLKDQVMQLQVPLQGVAPLRTAIRKLQTSSEQLTTIHSDFLLLCILAKSYKTGLSILEDDILEVDQPRDLFL-------YYYYGGIIYIGLKRFRTALECLHNVVTAPMTTLNAIAVEAYKKYILVSLILNGQVPSFPKYTSSTAQRNLKNHTQPYIDLSAC 262          
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Match: A0A2P4YLW6_9STRA (COP9 signalosome complex subunit 3 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLW6_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.190e-33
Identity = 88/251 (35.06%), Postives = 137/251 (54.58%), Query Frame = 3
Query:  204 FSQIVRSDGGGSAVAAVS-PLLVHAMDHTKRASLGSLHLLAAQAEVLTPCDRTPFIDVVLAFLEHCQWRHVVIAP--------KYVGDVCRKFAHVCILEGRVGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRHFYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLISSGNLPTIPKYAPNVVTRHLKSHATAYETLG 929
             SQ +  +   +AV A S   L  A++HT++  L  L LLAA+A  L        +D +   L H   + ++  P        K +  +C ++A + +   +  +A+ PLR    R     + LTP+H ++L  C+ +KCY      +DE  V  +  ++  +T V FL + YYGGL+Y+G KR++DA D F + + APA  LS+ V+E YKK++LV+LI  G    +PKY P VVTRH+++H TAY  L 
Sbjct:   29 LSQALGGEELTTAVRAASIAQLDVALEHTEQYPLSFLLLLAAKATKLEHARHQDELDEMRVTLLHQISQLLLHVPIPVASKEMKRLCGLCDQYARLAVDLQQSIKAVYPLRNFLRRYHEQHAVLTPLHAQWLYLCLHSKCYFAAMELLDETLV-EIHSQSHLVTCVDFLGYAYYGGLLYLGEKRYQDALDFFQLAITAPAVSLSAFVIEAYKKLLLVTLILRGEAVVLPKYTPFVVTRHVENHCTAYADLA 278          
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Match: K3YHU6_SETIT (PCI domain-containing protein n=18 Tax=Panicoideae TaxID=147369 RepID=K3YHU6_SETIT)

HSP 1 Score: 135 bits (341), Expect = 4.440e-33
Identity = 87/252 (34.52%), Postives = 127/252 (50.40%), Query Frame = 3
Query:  186 QEIGRNFSQIVRSDGGG--SAVAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLTPCDRTPFIDVVLAFLEHCQWRHVVIAPKYVGDVCRKFAHVCILEGRVGEAILPLRTAAYRMGSATSSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRHFYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLISSGNLPTIPKYAPNVVTRHLKSHATAYETLGRC 935
            +E+    S + ++DG    S  AA+ P L H        SLG L+LL A A          F+  V  FL  C    + +AP    +VCR F    +L       I PLR A  ++ ++   LTPVH E+L  C++AK YK G   +++  +F V+       P     + YYGG+IYIG K++  A +     + AP S L+++ VE YKK +LVSLI +G +P+ PKY      R++K+HA  Y  L  C
Sbjct:   19 EEVAHLHSLLKQADGDSLRSHAAALVPFLTHLSPEAH--SLGYLYLLEACATSGANLG-ADFLVTVADFLTACSADQIRLAPDKFLNVCRVFKDQVMLLNTPIRGIAPLRAAVRKIQASPEQLTPVHAEYLLLCLLAKQYKAGLSVLEDD-IFEVDQ------PKDLFLYCYYGGMIYIGLKKFPKASELLHNAVTAPMSSLNAIAVEAYKKYILVSLIQNGQVPSFPKYTSATAQRNMKNHAQIYVELSTC 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46336.11724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL38_9PHAE1.150e-12465.12COP9 signalosome complex subunit 3 n=2 Tax=Ectocar... [more]
A0A7S2ML15_9STRA4.700e-4437.50COP9 signalosome complex subunit 3 n=1 Tax=Dictyoc... [more]
A0A0D6QYT4_ARACU1.200e-3734.44PCI domain-containing protein n=1 Tax=Araucaria cu... [more]
A0A1Y1IEP4_KLENI5.380e-3736.99COP9 signalosome subunit CSN3 n=1 Tax=Klebsormidiu... [more]
A9SV28_PHYPA3.610e-3635.94Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A2R6XR65_MARPO5.200e-3636.60PCI domain-containing protein n=1 Tax=Marchantia p... [more]
A0A2P6VHG3_9CHLO7.550e-3536.07COP9 signalosome complex subunit 3 n=1 Tax=Micract... [more]
A0A6V7PNK9_ANACO1.220e-3432.94PCI domain-containing protein n=5 Tax=Ananas comos... [more]
A0A2P4YLW6_9STRA1.190e-3335.06COP9 signalosome complex subunit 3 n=1 Tax=Phytoph... [more]
K3YHU6_SETIT4.440e-3334.52PCI domain-containing protein n=18 Tax=Panicoideae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46336contigH-elongata_contig46336:500..4205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.5
Seed ortholog evalue2.2e-98
Seed eggNOG ortholog2880.D7G4S3
Preferred nameCOPS3
KEGG koko:K00413,ko:K12177
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000281,GO:0000338,GO:0000715,GO:0000910,GO:0001701,GO:0002009,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007346,GO:0008150,GO:0008152,GO:0008180,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010389,GO:0010564,GO:0010971,GO:0016043,GO:0016333,GO:0019538,GO:0019827,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030718,GO:0030727,GO:0031647,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0036099,GO:0036211,GO:0040001,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045787,GO:0045931,GO:0046483,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048729,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051179,GO:0051234,GO:0051276,GO:0051293,GO:0051301,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0060429,GO:0061640,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090068,GO:0090304,GO:0098727,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1902850,GO:1903047
EggNOG free text desc.protein deneddylation
EggNOG OGsKOG2582@1,KOG2582@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWinged helix-turn-helix DNA-binding domain
Ec32 orthologEc-20_000580.1
Exons6
Model size953
Cds size864
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.7260954-UTR-H-elongata_contig46336:499..5881622930767.7260954-UTR-H-elongata_contig46336:499..588Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46336 500..588 +
1691679561.2491558-UTR-H-elongata_contig46336:499..5881691679561.2491558-UTR-H-elongata_contig46336:499..588Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46336 500..588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.741876-CDS-H-elongata_contig46336:588..6721622930767.741876-CDS-H-elongata_contig46336:588..672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 589..672 +
1691679561.264261-CDS-H-elongata_contig46336:588..6721691679561.264261-CDS-H-elongata_contig46336:588..672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 589..672 +
1622930767.7582374-CDS-H-elongata_contig46336:1128..12741622930767.7582374-CDS-H-elongata_contig46336:1128..1274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 1129..1274 +
1691679561.273531-CDS-H-elongata_contig46336:1128..12741691679561.273531-CDS-H-elongata_contig46336:1128..1274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 1129..1274 +
1622930767.7735596-CDS-H-elongata_contig46336:1501..16141622930767.7735596-CDS-H-elongata_contig46336:1501..1614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 1502..1614 +
1691679561.281327-CDS-H-elongata_contig46336:1501..16141691679561.281327-CDS-H-elongata_contig46336:1501..1614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 1502..1614 +
1622930767.7855082-CDS-H-elongata_contig46336:2525..26681622930767.7855082-CDS-H-elongata_contig46336:2525..2668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 2526..2668 +
1691679561.290524-CDS-H-elongata_contig46336:2525..26681691679561.290524-CDS-H-elongata_contig46336:2525..2668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 2526..2668 +
1622930767.8007755-CDS-H-elongata_contig46336:3099..32821622930767.8007755-CDS-H-elongata_contig46336:3099..3282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 3100..3282 +
1691679561.2994924-CDS-H-elongata_contig46336:3099..32821691679561.2994924-CDS-H-elongata_contig46336:3099..3282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 3100..3282 +
1622930767.816997-CDS-H-elongata_contig46336:4010..42051622930767.816997-CDS-H-elongata_contig46336:4010..4205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 4011..4205 +
1691679561.308243-CDS-H-elongata_contig46336:4010..42051691679561.308243-CDS-H-elongata_contig46336:4010..4205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46336 4011..4205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46336.11724.1prot_H-elongata_contig46336.11724.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46336 589..4205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46336.11724.1

>prot_H-elongata_contig46336.11724.1 ID=prot_H-elongata_contig46336.11724.1|Name=mRNA_H-elongata_contig46336.11724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp
MEPSLEVMRLPTNNDADLIRMNGLLAKQGETLQEIGRNFSQIVRSDGGGS
AVAAVSPLLVHAMDHTKRASLGSLHLLAAQAEVLTPCDRTPFIDVVLAFL
EHCQWRHVVIAPKYVGDVCRKFAHVCILEGRVGEAILPLRTAAYRMGSAT
SSLTPVHPEFLQCCIIAKCYKVGARFMDEQPVFGVEPKATALTPVHFLRH
FYYGGLIYIGTKRWRDAQDSFVMLLAAPASVLSSLVVEGYKKMVLVSLIS
SGNLPTIPKYAPNVVTRHLKSHATAYETLGRCCQVRV*
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mRNA from alignment at H-elongata_contig46336:500..4205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46336.11724.1 ID=mRNA_H-elongata_contig46336.11724.1|Name=mRNA_H-elongata_contig46336.11724.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3706bp|location=Sequence derived from alignment at H-elongata_contig46336:500..4205+ (Himanthalia elongata Himel1 dioecious)
CTCCCCTGCGGTAATGAGAAGTGAGCGGTGTAGCAGGAACTAGTCAAGCC AACTCTTTCCGCTGATATCACTGACAATAGATTTGAATTATGGAGCCTTC ACTAGAAGTAATGCGCTTACCAACGAACAACGATGCAGATCTAATACGGA TGAATGGTCTACTCGCTAAGCAGGTAAATGAAGCAATTTTTTATGCTTAT TCCTACTTTCCGATAGTTGGTCACCTGGACTGCACCTCTTATGGTGCCAA GAAGGCGTGGATGTTCGGAGGGTTGGAATGAGCTCAAATTCTTTTATAAA TAAAAATTATATTTGGAAGTTATTGGCAAACAAATATTTTCACTCAGGTG TTGTACATGTTGTACCTCCTGTAGATATATTCTTGTACCAGCGCTGGCGT TTGCGCCTTGCCAAGAGCATAATATAATGCTGGGTTTGTCCACGAAAATA TATTCTTGACCCGTGGCAGTTATCCATAGGGAATCTAACTAAAAACTTTC ATATGAAGATTTTGTGCTCACAGGTAGTGATGTAGACACAAACCTGACAA TATTTTTTCCTCATAACCATTCGTGGTGTATTGAAAGTGACTTGAGTTCA TGTGGATGGGAAACTCACTCTTATCTCAGGGTGAAACGCTACAGGAGATT GGGAGAAATTTCTCACAAATCGTGAGGAGCGACGGCGGAGGGTCAGCGGT AGCGGCGGTCAGCCCGCTGCTCGTGCACGCAATGGACCACACCAAGAGAG CGTCTCTGGGCAGCCTGCATCTTCTGTAAGATTGCAGTGGCGATAAACGC CTTGCTCGCCTTCTCTTGCCCATGTGGAGCTTTCTTTCTCGATGGCGTTA ATGTGCTTCTACTGCGAGATTGTTCACGTGATGTGATAAAAACACCCGCC GTTCACATCAAGCTACTAATATTCTTTAGGTAACCCTCGAAAGCACTCTA AGCTCCCCTCTATTGACTGCACACCTCTTTGACCGTGCTTTGTTTGTTAC AGCGCTGCACAGGCAGAGGTCCTGACCCCATGCGACAGGACGCCTTTTAT AGACGTTGTATTGGCTTTCCTTGAGCACTGCCAATGGCGGCATGTCGTCA TCGCTCCAAAATATGGTGAGTCTGAATCGCTGGAATACCGAGTTAGATCA CGTTCGGCCACCGCAACTGACTCGTCAAAACTTTCTATAATAATTGTTTA TTCAGCATTGACTCTCTGCTCCTACTGTTTTTAGGGTCGGTTCAAACGAA GAATGTGGACTATGTTTTTTAAGAAAAGTAAAATAACAAGGGGACTTGAA AAATGCCTATAAATAGAACAAGTAGCTGTAGCTATAACGGACTTTTTCAG GTTGGTGAGCTTCATGTGAATTATGAAGGGAGGGAATCATCCAGCGGAGT GCATTGCAATTCCCAAGAATCGTGAACAATACCATTCTAGAATACAAATC CTGCCTAGCTCTTTCTGCGGTGAAAATCGGACCCTACTAACTCAAAGAAA ACATGGTAGACCAGACGCCACAGCCAAATAAGAGTTTTATCTATCTCCGG AATGTGCCTTCGCGAACCGATTGGTTAACGTGCTCGATTCATTTCATTCA GCCGTTGTCGATCGATCACAACCCTCCTCACTTTAGGAGTCTCTTCGACA GCAACCGCTGTAGCTTCAGGGGTAATTTACGATATTGTCGTCGCTAGTTG TATCGCACCAGCATCTGCGAGACTCTTTCGGCGGTATGCCTTTGGCTGCT AGGCTGTATGTCGCATCTAGCAGCAGTTGTCCTGCAGAGATGCTAAACGC CCGGCTGCTGTGAACTGTGTTAAATCAACATTCGAACCGAAGCCAGGGTC TACACCAGTGATGCGCTATGCCGATTTCTCCATATTTACAAATGTTCAAA AAATCACACTCATTTTTTTTCACTCCATTCAACCTCCAGTTAATGAACAA CTTTCTAAAACTTGTAAATTTTCTGAACATTTTTCGCTTCGTTTGAACCG ACCCTTATCTTGCCTTCCAATTCCAGTTGGAGACGTCTGTCGAAAGTTCG CCCATGTCTGTATATTGGAGGGAAGAGTTGGAGAAGCGATTTTGCCGTTG AGAACTGCGGCGTATCGCATGGGTTCAGCGACATCAAGCCTAACACCTGT TCACCCCGAATTCCTACAGGTAACAGCTTTGTAGACGACAAATGTACAGT CGGTTCTTCGTACCCTCGATTTTCTTATAGTCTTTAAACAACACCATTTT TGTTCTTGGTGTGCCACAAAATAATGAAATATCACCGCAGGAAGATTATT TATGGCAAAAAGCAACTCTCTTACCGTCCATGAAAGGCGTTGATTGACAC TACTTCGTATGGTTCTGGAGTAGTTTCTTACCGAGACGCAGGTGGGCAAC AACAAAAATAAAAAATAACAGGGATGTCGAAAGCGGGTACCAGTAGTATA TGGGGCAGTGAGCAGCGTTTTGGATAGTGCTCCAGAAAAAGTCTTACGAT CCTCGATCACCTCAAGTATCGCAAAACGCACACCCGGCGATGGCGATGTC CTTTTCGACACATGAGTCAATATAACGCCCGGTATTTTTCTCTCGGCAAG TGCTGTATCATAGCAAAATGCTACAAAGTTGGTGCTCGGTTTATGGACGA GCAACCTGTGTTCGGAGTGGAGCCCAAAGCTACTGCATTGACTCCAGTGC ACTTTTTGCGGCATTTCTATTACGGAGGACTTATTTATATCGGTACCAAG CGATGGAGGGATGCCCAAGACAGCTTCGTGATGGTGAGAAGTCAACAGAT GGTGGCATGAAGAGACTGTCCTATTTTTGTTTTACGCCTGTCAATTGTGG ACATTTTTGCTGAGACGTCTCGAGAGCATGTGCTCCAATTTTGTGCTTAC ACATGTCCTTGTAGATATCCTCTTCAGCTACCACATAATAAGATTTCGCG AACTGCGGTTCAACTTCAGATCGGTGGAGGTTACATTGTAATCCCATTTT AAGTATTTTAAACGTGACCACTTGCTTCCGATGCTGTCTGTGACTGTATC GCACATGCCAACTCTACTAAACATGCGGCGTACAATAATTGGTCTATGGG TTATCTGAATAGGTTGTACCCCTTACTCAAGTTACCTTGAGGACTGCTGG CTCAGTGCCGGTAGACTGTCGGTGGTAAACGCCATCGGTATGCAATTGCG TGACCTGATGAAATCAGAATTGGCCCCATGGCGGTTTGATGGTAGGATCG AGAGGATCGCGGAAGTACGCACCATATTCAGCCTGGGTTGAAAGAATGAG CAGGCTGACGCGGGACGGGACTGGTGAACCCGTCTTGCGAGACCAAATTA TCAGGCGCAAACTCGGACAGGGGAAAATTCAGTTTCCCTGTTCAGCTGAC CACAAGCAGGAGGCAACGAAATTCGGTTGATCTTACTCTGCTATATGTGA TGACCATACATACTTGATTCACAATATTTCAAATTATCCATGCGGCTCGC TGGTCATGCAGCTCCTTGCCGCCCCAGCGAGCGTCTTGAGCTCTTTAGTG GTGGAGGGATACAAGAAAATGGTACTGGTATCCCTAATCTCGTCCGGGAA TCTTCCAACAATTCCGAAGTACGCACCAAATGTGGTCACCCGACACTTGA AAAGCCACGCGACTGCCTACGAAACGCTGGGAAGATGCTGCCAGGTTCGA GTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig46336:500..4205+

>mRNA_H-elongata_contig46336.11724.1 ID=mRNA_H-elongata_contig46336.11724.1|Name=mRNA_H-elongata_contig46336.11724.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig46336:500..4205+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCCTTCACTAGAAGTAATGCGCTTACCAACGAACAACGATGCAGA
TCTAATACGGATGAATGGTCTACTCGCTAAGCAGATGGAGCCTTCACTAG
AAGTAATGCGCTTACCAACGAACAACGATGCAGATCTAATACGGATGAAT
GGTCTACTCGCTAAGCAGGGTGAAACGCTACAGGAGATTGGGAGAAATTT
CTCACAAATCGTGAGGAGCGACGGCGGAGGGTCAGCGGTAGCGGCGGTCA
GCCCGCTGCTCGTGCACGCAATGGACCACACCAAGAGAGCGTCTCTGGGC
AGCCTGCATCTTCTGGTGAAACGCTACAGGAGATTGGGAGAAATTTCTCA
CAAATCGTGAGGAGCGACGGCGGAGGGTCAGCGGTAGCGGCGGTCAGCCC
GCTGCTCGTGCACGCAATGGACCACACCAAGAGAGCGTCTCTGGGCAGCC
TGCATCTTCTCGCTGCACAGGCAGAGGTCCTGACCCCATGCGACAGGACG
CCTTTTATAGACGTTGTATTGGCTTTCCTTGAGCACTGCCAATGGCGGCA
TGTCGTCATCGCTCCAAAATATGCGCTGCACAGGCAGAGGTCCTGACCCC
ATGCGACAGGACGCCTTTTATAGACGTTGTATTGGCTTTCCTTGAGCACT
GCCAATGGCGGCATGTCGTCATCGCTCCAAAATATGTTGGAGACGTCTGT
CGAAAGTTCGCCCATGTCTGTATATTGGAGGGAAGAGTTGGAGAAGCGAT
TTTGCCGTTGAGAACTGCGGCGTATCGCATGGGTTCAGCGACATCAAGCC
TAACACCTGTTCACCCCGAATTCCTACAGTTGGAGACGTCTGTCGAAAGT
TCGCCCATGTCTGTATATTGGAGGGAAGAGTTGGAGAAGCGATTTTGCCG
TTGAGAACTGCGGCGTATCGCATGGGTTCAGCGACATCAAGCCTAACACC
TGTTCACCCCGAATTCCTACAGTGCTGTATCATAGCAAAATGCTACAAAG
TTGGTGCTCGGTTTATGGACGAGCAACCTGTGTTCGGAGTGGAGCCCAAA
GCTACTGCATTGACTCCAGTGCACTTTTTGCGGCATTTCTATTACGGAGG
ACTTATTTATATCGGTACCAAGCGATGGAGGGATGCCCAAGACAGCTTCG
TGATGTGCTGTATCATAGCAAAATGCTACAAAGTTGGTGCTCGGTTTATG
GACGAGCAACCTGTGTTCGGAGTGGAGCCCAAAGCTACTGCATTGACTCC
AGTGCACTTTTTGCGGCATTTCTATTACGGAGGACTTATTTATATCGGTA
CCAAGCGATGGAGGGATGCCCAAGACAGCTTCGTGATGCTCCTTGCCGCC
CCAGCGAGCGTCTTGAGCTCTTTAGTGGTGGAGGGATACAAGAAAATGGT
ACTGGTATCCCTAATCTCGTCCGGGAATCTTCCAACAATTCCGAAGTACG
CACCAAATGTGGTCACCCGACACTTGAAAAGCCACGCGACTGCCTACGAA
ACGCTGGGAAGATGCTGCCAGGTTCGAGTGTGACTCCTTGCCGCCCCAGC
GAGCGTCTTGAGCTCTTTAGTGGTGGAGGGATACAAGAAAATGGTACTGG
TATCCCTAATCTCGTCCGGGAATCTTCCAACAATTCCGAAGTACGCACCA
AATGTGGTCACCCGACACTTGAAAAGCCACGCGACTGCCTACGAAACGCT
GGGAAGATGCTGCCAGGTTCGAGTGTGA
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