mRNA_H-elongata_contig46329.11723.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46329.11723.1
Unique NamemRNA_H-elongata_contig46329.11723.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46329.11723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46329contigH-elongata_contig46329:2265..2782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.6705139-CDS-H-elongata_contig46329:2264..27561622930767.6705139-CDS-H-elongata_contig46329:2264..2756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46329 2265..2756 +
1691679561.233045-CDS-H-elongata_contig46329:2264..27561691679561.233045-CDS-H-elongata_contig46329:2264..2756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46329 2265..2756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.6842122-UTR-H-elongata_contig46329:2756..27821622930767.6842122-UTR-H-elongata_contig46329:2756..2782Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46329 2757..2782 +
1691679561.2406936-UTR-H-elongata_contig46329:2756..27821691679561.2406936-UTR-H-elongata_contig46329:2756..2782Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46329 2757..2782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46329.11723.1prot_H-elongata_contig46329.11723.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46329 2265..2756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46329.11723.1

>prot_H-elongata_contig46329.11723.1 ID=prot_H-elongata_contig46329.11723.1|Name=mRNA_H-elongata_contig46329.11723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
PAAAAAASSSSRKPHIVGVSYSFSEPRPPEASSLDVGAARDPCNFARALL
LLPAHLVFPFLYHRLVSPLPVVAATAVPGPSARLSSPLVLGKPRVEELIT
SSTPTASTVPPFLRFPVSPSPYPIGSDGGRVDVFLPTRSGGRAQPPLPVP
LVPGSTPAALPSP*
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mRNA from alignment at H-elongata_contig46329:2265..2782+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46329.11723.1 ID=mRNA_H-elongata_contig46329.11723.1|Name=mRNA_H-elongata_contig46329.11723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=518bp|location=Sequence derived from alignment at H-elongata_contig46329:2265..2782+ (Himanthalia elongata Himel1 dioecious)
CCAGCTGCCGCCGCCGCCGCCTCCTCCTCCTCCCGCAAACCGCACATCGT
AGGGGTGTCTTACAGCTTCTCTGAACCCCGTCCTCCGGAGGCCTCCAGCC
TCGACGTCGGTGCGGCGCGCGACCCCTGCAACTTCGCACGGGCCCTGCTG
CTGCTGCCAGCGCACCTCGTCTTCCCGTTCCTCTACCACCGTCTCGTCTC
GCCCTTGCCAGTCGTTGCCGCCACCGCCGTACCGGGACCAAGCGCCCGGC
TCTCTTCCCCTCTGGTACTCGGGAAACCTCGCGTAGAAGAACTCATAACC
TCCTCGACTCCCACCGCCTCCACGGTCCCCCCCTTCCTTCGCTTCCCTGT
AAGCCCTTCCCCCTACCCCATCGGCAGCGATGGCGGCAGGGTTGACGTCT
TCCTCCCTACGCGCTCGGGCGGACGTGCCCAACCACCTCTCCCCGTGCCG
CTCGTGCCCGGTTCCACCCCCGCCGCCCTTCCAAGCCCGTAAACCGACGT
CGTGGCTCTTGGCACCCC
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Coding sequence (CDS) from alignment at H-elongata_contig46329:2265..2782+

>mRNA_H-elongata_contig46329.11723.1 ID=mRNA_H-elongata_contig46329.11723.1|Name=mRNA_H-elongata_contig46329.11723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig46329:2265..2782+ (Himanthalia elongata Himel1 dioecious)
CCAGCTGCCGCCGCCGCCGCCTCCTCCTCCTCCCGCAAACCGCACATCGT
AGGGGTGTCTTACAGCTTCTCTGAACCCCGTCCTCCGGAGGCCTCCAGCC
TCGACGTCGGTGCGGCGCGCGACCCCTGCAACTTCGCACGGGCCCTGCTG
CTGCTGCCAGCGCACCTCGTCTTCCCGTTCCTCTACCACCGTCTCGTCTC
GCCCTTGCCAGTCGTTGCCGCCACCGCCGTACCGGGACCAAGCGCCCGGC
TCTCTTCCCCTCTGGTACTCGGGAAACCTCGCGTAGAAGAACTCATAACC
TCCTCGACTCCCACCGCCTCCACGGTCCCCCCCTTCCTTCGCTTCCCTGT
AAGCCCTTCCCCCTACCCCATCGGCAGCGATGGCGGCAGGGTTGACGTCT
TCCTCCCTACGCGCTCGGGCGGACGTGCCCAACCACCTCTCCCCGTGCCG
CTCGTGCCCGGTTCCACCCCCGCCGCCCTTCCAAGCCCGTAACCAGCTGC
CGCCGCCGCCGCCTCCTCCTCCTCCCGCAAACCGCACATCGTAGGGGTGT
CTTACAGCTTCTCTGAACCCCGTCCTCCGGAGGCCTCCAGCCTCGACGTC
GGTGCGGCGCGCGACCCCTGCAACTTCGCACGGGCCCTGCTGCTGCTGCC
AGCGCACCTCGTCTTCCCGTTCCTCTACCACCGTCTCGTCTCGCCCTTGC
CAGTCGTTGCCGCCACCGCCGTACCGGGACCAAGCGCCCGGCTCTCTTCC
CCTCTGGTACTCGGGAAACCTCGCGTAGAAGAACTCATAACCTCCTCGAC
TCCCACCGCCTCCACGGTCCCCCCCTTCCTTCGCTTCCCTGTAAGCCCTT
CCCCCTACCCCATCGGCAGCGATGGCGGCAGGGTTGACGTCTTCCTCCCT
ACGCGCTCGGGCGGACGTGCCCAACCACCTCTCCCCGTGCCGCTCGTGCC
CGGTTCCACCCCCGCCGCCCTTCCAAGCCCGTAA
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