mRNA_H-elongata_contig46269.11710.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46269.11710.1
Unique NamemRNA_H-elongata_contig46269.11710.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Match: D8LBJ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ3_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 6.910e-82
Identity = 174/319 (54.55%), Postives = 190/319 (59.56%), Query Frame = 1 
Query:    1 VLRDSTYKDAHEFFNFVLNEMADSLVAKEKXXXXXXXXXXXXXXXXXASQQNGVHQPQYPDKHHAPAASVGHQNPPQQHRSSPWSKMSSRRGSFGNGTKNGLTVSQAGGGVLQRFGPGAAPKCEKSEDSKSPP-----------SAPSLSGASGGHASGGAVTEGIEEGVRRKGDGSKE----TWLHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDGRLYR 912
            + R +  +DAHEFFNFVLNEMADS+VA+ K            XXXXX                            P+  RSS WSKMSS +GSFGNG                                                  S +G  GG         G   G RR  DG+ E    TW+HRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVE NSSV+ACLR+FS+TETLTKKNKFFCE+C ALQ EAEK I+LKRLPRVLTLHLKRFKYVESLE+FSKLSHRVVFPLELRTPNMTD  GEAD DGRLYR
Sbjct:  124 LFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPR--RSSTWSKMSSFKGSFGNGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGESAAGVDGGG--------GNARGNRRTSDGANESGGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTKKNKFFCETCYALQ-EAEKKIRLKRLPRVLTLHLKRFKYVESLENFSKLSHRVVFPLELRTPNMTDAAGEADADGRLYR 431
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BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Match: A0A835Z200_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z200_9STRA)

HSP 1 Score: 196 bits (499), Expect = 7.700e-57
Identity = 98/137 (71.53%), Postives = 114/137 (83.21%), Query Frame = 1 
Query:  499 KETWLHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDGRLY 909
            K TW+H +FQGVLTN+TKC+CCETV++RDEPF+DL LD+E N SVTACLR+FS  ETLT  NKFFCE+C ALQ EAEK + L+RLPRVLTLHLKRFKY+E +++FSKLSHRVVFPLELR PNM      AD DG LY
Sbjct:  156 KTTWIHDLFQGVLTNETKCICCETVTHRDEPFVDLPLDIEQNCSVTACLRNFSRMETLTGCNKFFCETCCALQ-EAEKRMCLRRLPRVLTLHLKRFKYMEQIQNFSKLSHRVVFPLELRMPNMARDSA-ADADGILY 290
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BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Match: A0A3P6R5X0_CYLGO (USP domain-containing protein n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P6R5X0_CYLGO)

HSP 1 Score: 169 bits (428), Expect = 9.310e-48
Identity = 80/140 (57.14%), Postives = 111/140 (79.29%), Query Frame = 1 
Query:  505 TWLHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDGRLYRQVGA 924
            TW+H IFQG LTN+T+CLCCETVS++DE F+DLS+D++ N+S+T CLR FS TETL    K+FCE+C++ +QEA+K +++KRLP +L LHLKRFKY++ L  ++KLS+RV+FPLELR  N++D   +A +  RLY  V A
Sbjct:   14 TWIHEIFQGTLTNETRCLCCETVSSKDEDFLDLSVDIDQNASITHCLRVFSETETLCGDQKYFCETCSS-KQEAQKRMRIKRLPHMLALHLKRFKYMDQLSRYTKLSYRVLFPLELRLFNVSD---DASNGDRLYDLVAA 149
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BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Match: A0A7S4DHD4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHD4_HETAK)

HSP 1 Score: 168 bits (426), Expect = 1.430e-47
Identity = 81/141 (57.45%), Postives = 107/141 (75.89%), Query Frame = 1 
Query:  490 DGSKETWLHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDGRLYR 912
            +G   TW+H +F+G LTN+T+CLCCE+V+ RDEPF DLSL++  ++SV ACL  FS+TE L+  NKF+C++C+ LQ EAEK +++KRLPRVL LHLKRFKYVE L+ F+KLS +V FP EL+ PN T    E D D  LY+
Sbjct:   68 EGPVRTWVHELFEGTLTNETRCLCCESVTERDEPFFDLSLEIAQHTSVLACLNKFSSTEVLSHANKFYCDTCHTLQ-EAEKRMKVKRLPRVLVLHLKRFKYVERLQRFAKLSCQVNFPTELKIPNTTKDSQE-DADNTLYK 206
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BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Match: A0A7S0JC62_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JC62_9EUKA)

HSP 1 Score: 168 bits (425), Expect = 2.070e-47
Identity = 76/136 (55.88%), Postives = 111/136 (81.62%), Query Frame = 1 
Query:  502 ETWLHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDGRLY 909
            +TW+H IF+GVLT++T+C+CCE+++ RDE F+DLSL++E NSSV+AC+R+FS++E L  +NKFFC++C +LQ EA++++++KRLP VL LHLKRFKY+ESL+ F KLSHR+ FPLEL+  N  +     +D  R+Y
Sbjct:    3 KTWIHSIFEGVLTSETRCMCCESLTTRDERFLDLSLEIEQNSSVSACMRNFSSSEALRGENKFFCDTCCSLQ-EAKRSMRIKRLPNVLALHLKRFKYIESLQRFKKLSHRISFPLELKVTNTAES---TEDPDRVY 134
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BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Match: A0A168NEA7_MUCCL (USP domain-containing protein (Fragment) n=1 Tax=Mucor lusitanicus CBS 277.49 TaxID=747725 RepID=A0A168NEA7_MUCCL)

HSP 1 Score: 169 bits (429), Expect = 5.360e-47
Identity = 84/155 (54.19%), Postives = 115/155 (74.19%), Query Frame = 1 
Query:  448 AVTEGIEEG-VRRKGDGSKETWLHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDGRLY 909
            A   G ++G +   G   K TW+H++F+GV +N+TKCL CETV++RDE FMDLS+DVE NSS+T+CLR FS +ETL  KNK+FC+ C+ LQ EAE+ +++K+LP +L LHLKRFKY E L+ + KL++RVVFP ELR  N +D   +AD   R+Y
Sbjct:  101 ADESGSKQGSINSTGQNPKNTWVHQLFEGVFSNETKCLSCETVTSRDECFMDLSIDVEMNSSITSCLRQFSASETLCHKNKYFCDVCSGLQ-EAERRMKIKKLPNILALHLKRFKYQEQLQKYIKLTYRVVFPFELRLFNTSDDTEDAD---RMY 251
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BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Match: A0A2G8KWC2_STIJA (Putative ubiquitin carboxyl-terminal hydrolase 12 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KWC2_STIJA)

HSP 1 Score: 171 bits (432), Expect = 5.660e-47
Identity = 82/141 (58.16%), Postives = 112/141 (79.43%), Query Frame = 1 
Query:  496 SKETWLHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDGRLYRQV 918
            ++ TW+H IFQG LTN+T+CLCCE VS RDE F+DLS+DVE N+S+T CLR FSNTETL+++ K++CE+C + +QEA+K +Q+K+LP +L LHLKRFK+VE  + ++KLS+RVVFPLELR  N +DG   A+   +LY  V
Sbjct:  156 TEPTWVHDIFQGTLTNETRCLCCEGVSTRDEDFLDLSVDVEQNTSITHCLREFSNTETLSQECKYYCENCCS-KQEAQKRMQVKKLPMILALHLKRFKFVEQYQRYTKLSYRVVFPLELRLLNTSDG---AESSDKLYDLV 292
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BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Match: A0A067QHM1_9AGAM (USP domain-containing protein (Fragment) n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067QHM1_9AGAM)

HSP 1 Score: 167 bits (424), Expect = 9.650e-47
Identity = 84/154 (54.55%), Postives = 116/154 (75.32%), Query Frame = 1 
Query:  451 VTEGIEEGVRRK-GDGSKETWLHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDGRLY 909
            + E +E+  R   G+G+  T +HR+F+G+LT++T+CL CETVS+RDE F+DLS+D+E NSSVTACLR FS +E L ++NKFFC+SC  LQ EAEK +++K+LP +L LHLKRFKY E ++ + KL++RV FP ELR  N  D   +A+D  RLY
Sbjct:   62 IVEEMEDDRRNAVGNGNDATIVHRLFEGILTSETRCLTCETVSSRDESFLDLSIDIEQNSSVTACLRQFSASEMLCQRNKFFCDSCCGLQ-EAEKRMKIKKLPNILALHLKRFKYQEDVQKYIKLAYRVAFPFELRLFNTVD---DAEDRDRLY 211
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BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Match: O88348_MOUSE (Deubiquitinating enzyme (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=O88348_MOUSE)

HSP 1 Score: 164 bits (415), Expect = 1.170e-46
Identity = 83/159 (52.20%), Postives = 113/159 (71.07%), Query Frame = 1 
Query:  466 EEGVRRKGDGSKE--------TWLHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDGRLYRQV 918
            + G  R GD   E        TW+H IFQG LTN+T+CL CET+S++DE F+DLS+DVE N+S+T CLR FSNTETL  + K++CE C + +QEA K +++K+LP +L LHLKRFKY++ L  ++KLS+RVVFPLELR  N +   G+A +  R+Y  V
Sbjct:    3 QNGRLRNGDVDNEDNNSTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRS-KQEAHKRMKVKKLPLILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTS---GDATNPDRMYDLV 157
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BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Match: A0A4P9XKD2_9FUNG (USP domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XKD2_9FUNG)

HSP 1 Score: 169 bits (429), Expect = 1.430e-46
Identity = 83/135 (61.48%), Postives = 109/135 (80.74%), Query Frame = 1 
Query:  505 TWLHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKRLPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDGRLY 909
            TW+H++F+GVLTN+TKCL CETV++RDE F+DLS+D+E +SSVT+CLR FS +E L  KNKF+C++C  LQ EAEK +++K+LPRVL LHLKRFKY E L+ + KLS+RVVFP+ELR  N +D    A+D  RLY
Sbjct:  152 TWVHQLFEGVLTNETKCLTCETVTSRDESFLDLSIDIERHSSVTSCLRQFSASEMLCHKNKFYCDTCCGLQ-EAEKRMKIKKLPRVLALHLKRFKYQERLQRYIKLSYRVVFPMELRLFNTSDA---AEDPDRLY 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46269.11710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBJ3_ECTSI6.910e-8254.55Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A835Z200_9STRA7.700e-5771.53Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A3P6R5X0_CYLGO9.310e-4857.14USP domain-containing protein n=1 Tax=Cylicostepha... [more]
A0A7S4DHD4_HETAK1.430e-4757.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0JC62_9EUKA2.070e-4755.88Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A168NEA7_MUCCL5.360e-4754.19USP domain-containing protein (Fragment) n=1 Tax=M... [more]
A0A2G8KWC2_STIJA5.660e-4758.16Putative ubiquitin carboxyl-terminal hydrolase 12 ... [more]
A0A067QHM1_9AGAM9.650e-4754.55USP domain-containing protein (Fragment) n=1 Tax=J... [more]
O88348_MOUSE1.170e-4652.20Deubiquitinating enzyme (Fragment) n=1 Tax=Mus mus... [more]
A0A4P9XKD2_9FUNG1.430e-4661.48USP domain-containing protein (Fragment) n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46269contigH-elongata_contig46269:512..4302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.2
Seed ortholog evalue6.1e-70
Seed eggNOG ortholog2880.D8LBJ3
Preferred nameUSP46
KEGG koko:K11842,ko:K11872
GOsGO:0000578,GO:0001662,GO:0002209,GO:0002682,GO:0002684,GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0007154,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008343,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009636,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010992,GO:0010995,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019783,GO:0019941,GO:0022411,GO:0022898,GO:0023051,GO:0023056,GO:0023057,GO:0030163,GO:0030534,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032228,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033555,GO:0034762,GO:0034765,GO:0035254,GO:0035255,GO:0035282,GO:0035871,GO:0036211,GO:0036459,GO:0036477,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042592,GO:0042596,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045013,GO:0045471,GO:0045746,GO:0045892,GO:0045934,GO:0045990,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050795,GO:0050804,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051261,GO:0051603,GO:0051716,GO:0060004,GO:0060013,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0071947,GO:0080090,GO:0090325,GO:0090326,GO:0097305,GO:0097458,GO:0097708,GO:0098657,GO:0099177,GO:0099601,GO:0101005,GO:0140096,GO:1900449,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1904062,GO:2000112,GO:2000113,GO:2000311,GO:2001141,GO:2001257
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1864@1,KOG1864@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size927
Cds size927
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46269.11710.1prot_H-elongata_contig46269.11710.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46269 512..4302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930766.203596-CDS-H-elongata_contig46269:511..10811622930766.203596-CDS-H-elongata_contig46269:511..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46269 512..1081 +
1691679560.5894947-CDS-H-elongata_contig46269:511..10811691679560.5894947-CDS-H-elongata_contig46269:511..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46269 512..1081 +
1622930766.2235348-CDS-H-elongata_contig46269:1368..15151622930766.2235348-CDS-H-elongata_contig46269:1368..1515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46269 1369..1515 +
1691679560.6052577-CDS-H-elongata_contig46269:1368..15151691679560.6052577-CDS-H-elongata_contig46269:1368..1515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46269 1369..1515 +
1622930766.236345-CDS-H-elongata_contig46269:4092..43021622930766.236345-CDS-H-elongata_contig46269:4092..4302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46269 4093..4302 +
1691679560.614285-CDS-H-elongata_contig46269:4092..43021691679560.614285-CDS-H-elongata_contig46269:4092..4302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46269 4093..4302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46269.11710.1

>prot_H-elongata_contig46269.11710.1 ID=prot_H-elongata_contig46269.11710.1|Name=mRNA_H-elongata_contig46269.11710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
VLRDSTYKDAHEFFNFVLNEMADSLVAKEKKKQQEAREHEEQRNNKSASQ
QNGVHQPQYPDKHHAPAASVGHQNPPQQHRSSPWSKMSSRRGSFGNGTKN
GLTVSQAGGGVLQRFGPGAAPKCEKSEDSKSPPSAPSLSGASGGHASGGA
VTEGIEEGVRRKGDGSKETWLHRIFQGVLTNQTKCLCCETVSNRDEPFMD
LSLDVEPNSSVTACLRSFSNTETLTKKNKFFCESCNALQQEAEKTIQLKR
LPRVLTLHLKRFKYVESLESFSKLSHRVVFPLELRTPNMTDGQGEADDDG
RLYRQVGA*
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mRNA from alignment at H-elongata_contig46269:512..4302+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46269.11710.1 ID=mRNA_H-elongata_contig46269.11710.1|Name=mRNA_H-elongata_contig46269.11710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3791bp|location=Sequence derived from alignment at H-elongata_contig46269:512..4302+ (Himanthalia elongata Himel1 dioecious)
GTCCTGCGTGATTCTACATACAAGGATGCCCACGAGTTCTTCAACTTCGT
TTTGAACGAGATGGCTGACAGTCTCGTCGCGAAGGAGAAGAAGAAGCAGC
AAGAAGCCCGCGAACACGAGGAGCAACGGAATAACAAGTCGGCATCGCAA
CAAAACGGCGTTCATCAACCGCAGTACCCGGACAAGCACCATGCCCCCGC
GGCGTCGGTCGGTCATCAAAATCCGCCGCAACAACATCGATCATCTCCCT
GGTCAAAGATGTCGAGCCGCAGGGGGAGCTTCGGGAACGGAACGAAAAAC
GGTTTGACCGTGTCGCAAGCAGGGGGTGGGGTGCTGCAGCGGTTCGGGCC
AGGCGCGGCGCCGAAGTGTGAGAAAAGCGAAGATAGCAAATCGCCACCCT
CAGCACCCTCATTGAGCGGTGCCTCGGGCGGACACGCCAGCGGCGGCGCC
GTGACGGAGGGAATCGAGGAGGGGGTTAGGAGGAAGGGCGACGGATCTAA
GGAGACGTGGCTGCACCGGATTTTCCAGGGAGTCCTGACTAACCAGACGA
AATGTCTGTGCTGCGAAACGGTGGGTACCAGTTTCCATAGGTCTCGCTTT
TGTGAAGACTGGCGTATAGGGGGGGGTAGGGGGGGACGAGACAGAGGGAG
CGGGGGGCAGGGCAAGATTTTTTTCGCTTGAGTCGCGCAAACCTCCCATG
CTACATCTGGAATCGTCTCTTCTGTTTTTTCACCACGTTGCCTCGACGCT
GCGATAGAGTCATAGGTTATCAAACGCTTTTTAATTTCACCGTTTTCATT
CTATGCCACGCACTCCTGGCTTTTTCTCCGCCCTCTTCCGCTACTGTCGC
GTCGCAGGTGAGCAATCGCGACGAACCGTTCATGGATCTTTCGCTAGACG
TGGAGCCGAACTCATCGGTGACGGCGTGTCTTCGAAGCTTCAGCAACACC
GAGACCCTTACCAAAAAGAATAAGTTCTTCTGTGAGAGCTGCAATGCACT
GCAGGTGTGTGTGTGTGTGTGTATTAAATTTAGTATAACCGCGCAATCCG
GCGCTGTTATGCTGTGTTTGTGTGTGTCTGTCTGTATGTGTGCCGCTTCA
TGTACAGTGGTGGGCCCGATTTAGCGACCCCTTGTTTAGCAACATGCCCA
GTATGGTGACCACAAAATTGCGTGGAACCACTGCACCCCGGTTTCGCGGC
TATTATTAGCCTCTAAACTAAACCGGGTGGTGCCTACAATAATAGCGACT
AGTAATATTTCATTTATTACCCTGTTTTCAGCGAGTAATAGCGACCTAGA
TTCAAATTTTGCGGAGCACCCCGCGCTCACATAGCAGAGACACAATCAAC
GCGGGCCGCACAAACACATCATGCCGTGCGCAGATGGAGAGAGAGTTGGG
CAAACTTGTGGGTGTGGCACTGGATCTAACCGAGGCCCATGGTTGTCGTG
GTGGTTGTGGCGGCTGGCCGCATGCATGGCCTTTGTAGGGAGGAAGGGTA
TCCCGATTGTGGCAGCGAGATGCACTGCATTTGCCACTCGTGTGCACACA
AAAAGGAGCAGGCTTTCCCACCCCTCTCGAATCCATCCAAGCGCAAAAAT
ATAGAGAGCGGCTTTCTTCCACCATCAGGCGCGCCGAAGAAAAAAACTAT
CGCTACGGCTGCAAAAGCGGCCCGCACGCGGCTCACTTTCGGCCAGAAGC
TTAATGTTTTAAAGCTTTCTGACGACGCGGTGGGGCGCGCAGAACTAGCG
CGCAGGTTCAACTGCGGCACCACGGCGATTGCATCGATCAAGACGAACAG
GACGAGCGTGGAGTCGAACGCAGCAGCTAGTTCACGAGGTGCTTCGTCGA
CGAGCGCAAGGGATTTTCCCAAGGTGTGTGAGAGAGCAAAGTCTTATTTA
AAAAAAATGTTTAAAAGAAAATAAGAAAGACAAAAAAAGAGAAAAAAAAA
GCAAAAAAGCGTATGTATACATAAGAGAAAGGGCGTAGAAACATATGTCG
AACACAGCAGTCATAGACACCGGACAAGACGGAGCATATTGCATAAATAT
ACAGTAGTAGACGTTGTAAATATCTGGTACGCTTGTTATGGGTGCTGTAA
AATGTACTTGATAAATTGTGTTGTTGCACTTGTACTGTACAGCAGTCGAT
TTTCGTACTTTCTGTTAATGGTATGTATGATGGTGCATTTGGCACAGCAG
TACGCGCACATCGCACCCCTATTTCACTCACACGGAAAAAAAAAGCACTG
AAAGCGTTGTGTCCATGACAGCGAGCACCGGTGGCGGACTCCATGCGCGA
TTTGTTCCCTTCCCCTCTCAACTAGGTGGACAAGGTCATCTCCGCCTTCG
TCGAGGAAGCCAGGAGGGTACGACTGCCTATAACGCGGGCTTCGATCATG
TCGTTCCGGGTCGCCGCCAAGGAGAGAATGTTATCGGTGGGGTCTACTAC
TGGTGTCGAGAAGAAGAAGCTCAAGGGCTTCGCCGCAAGTGAAAGGTGGG
CCAAGAACTTCATTGTGCGGAAAGGAATGGTGAGCACCATGCTGCACTGT
CAGGCCGGCAGTGTCGATGACGCGGCCATCGCGGAAGGCCTGCAGAAGAT
CCCCCTCGAGACATCTTCAACGTCGACGAGACATGCACCTTCTACAGACT
GCTGTCGAACCGCACGTATGTGGCAAAGTGGAAGAACCCACGCATGACCC
TGTCAAGATGAGCTCCACGCCACTGCTCTTCTTCCGCAAAATTGGAGCAT
TTGTTTCCGGTTTAGCGACTGATAGCCGCTAAAACGTCAACATCGACCTG
CCTTGATTAGCGACCATATTCTCTCCTGGCACTAGGGGTCGCTAAACCGG
GCCCACCACTCTATGTCGCTTTCGATTCGATTCGATTCGATTCGACCTGC
GGAACGGGGAAAGCACTTCCTACGCTTCATCTTCTTTTAAGAGGAGCCTC
CGATACTGTACTGTGTAGCTGTATCACACATGTCCACTCTACTAATAATA
GTGTGTGTGGAAAAAGAGAGGCGTACAATATTTGTACCTAAATAGACTGC
ACCCGTTACTCAAGCTACCTTGAGAAGTGCTGGTTCAGTGCCGGTGGGCT
GTCGGTGGTAAACGCCATCGGTACGCAATTAAGTGACCTGATGAATTCGG
GATTGGCTCGATGGCGGTTGGCGGTAGAGATGGACGCCGTCGCGGAAAAC
GAGATGATCCCAGGAGTACGCACCAGATTCAGCCAGGGTTCAGAGAATGA
GTAGGCTGACGCAGGACGGGACGGCCGAACCCGTCTCGCGAGGCCAAATT
ATCAGGCGCGAACGGGGACGGGGGGGAAATTATTTTGCCTGTTCAGCTGA
CCACAAACAGGAGGCAACCAAATCCGGTTGATCTTACTCTATATGTGATG
ACCATACACATAATTAGGTACTGAACTGATTTGCCCCGCTTGTAGACACA
ACGGAAAAAACATATGCTCGAGTCCGGCCGTATTTGCCCCGTGGTGCGCT
GCCAGAGTATTTTTGTACGATGATCTGGCGTGTTCTATGTCCCCTGTCCC
CTGATGATGTCACGATCGTCTGCACAACAAGCAGGAAGCCGAGAAGACGA
TTCAACTCAAAAGGCTTCCTCGCGTTCTGACGCTGCACCTGAAGCGCTTC
AAGTACGTCGAGTCTCTCGAGAGCTTCTCGAAGCTCTCGCACCGAGTGGT
GTTCCCTCTTGAGCTGCGTACGCCCAACATGACGGACGGACAGGGCGAGG
CGGATGACGATGGTCGTTTGTACAGGCAAGTGGGGGCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig46269:512..4302+

>mRNA_H-elongata_contig46269.11710.1 ID=mRNA_H-elongata_contig46269.11710.1|Name=mRNA_H-elongata_contig46269.11710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1854bp|location=Sequence derived from alignment at H-elongata_contig46269:512..4302+ (Himanthalia elongata Himel1 dioecious)
GTCCTGCGTGATTCTACATACAAGGATGCCCACGAGTTCTTCAACTTCGT
TTTGAACGAGATGGCTGACAGTCTCGTCGCGAAGGAGAAGAAGAAGCAGC
AAGAAGCCCGCGAACACGAGGAGCAACGGAATAACAAGTCGGCATCGCAA
CAAAACGGCGTTCATCAACCGCAGTACCCGGACAAGCACCATGCCCCCGC
GGCGTCGGTCGGTCATCAAAATCCGCCGCAACAACATCGATCATCTCCCT
GGTCAAAGATGTCGAGCCGCAGGGGGAGCTTCGGGAACGGAACGAAAAAC
GGTTTGACCGTGTCGCAAGCAGGGGGTGGGGTGCTGCAGCGGTTCGGGCC
AGGCGCGGCGCCGAAGTGTGAGAAAAGCGAAGATAGCAAATCGCCACCCT
CAGCACCCTCATTGAGCGGTGCCTCGGGCGGACACGCCAGCGGCGGCGCC
GTGACGGAGGGAATCGAGGAGGGGGTTAGGAGGAAGGGCGACGGATCTAA
GGAGACGTGGCTGCACCGGATTTTCCAGGGAGTCCTGACTAACCAGACGA
AATGTCTGTGCTGCGAAACGGTCCTGCGTGATTCTACATACAAGGATGCC
CACGAGTTCTTCAACTTCGTTTTGAACGAGATGGCTGACAGTCTCGTCGC
GAAGGAGAAGAAGAAGCAGCAAGAAGCCCGCGAACACGAGGAGCAACGGA
ATAACAAGTCGGCATCGCAACAAAACGGCGTTCATCAACCGCAGTACCCG
GACAAGCACCATGCCCCCGCGGCGTCGGTCGGTCATCAAAATCCGCCGCA
ACAACATCGATCATCTCCCTGGTCAAAGATGTCGAGCCGCAGGGGGAGCT
TCGGGAACGGAACGAAAAACGGTTTGACCGTGTCGCAAGCAGGGGGTGGG
GTGCTGCAGCGGTTCGGGCCAGGCGCGGCGCCGAAGTGTGAGAAAAGCGA
AGATAGCAAATCGCCACCCTCAGCACCCTCATTGAGCGGTGCCTCGGGCG
GACACGCCAGCGGCGGCGCCGTGACGGAGGGAATCGAGGAGGGGGTTAGG
AGGAAGGGCGACGGATCTAAGGAGACGTGGCTGCACCGGATTTTCCAGGG
AGTCCTGACTAACCAGACGAAATGTCTGTGCTGCGAAACGGTGAGCAATC
GCGACGAACCGTTCATGGATCTTTCGCTAGACGTGGAGCCGAACTCATCG
GTGACGGCGTGTCTTCGAAGCTTCAGCAACACCGAGACCCTTACCAAAAA
GAATAAGTTCTTCTGTGAGAGCTGCAATGCACTGCAGGTGAGCAATCGCG
ACGAACCGTTCATGGATCTTTCGCTAGACGTGGAGCCGAACTCATCGGTG
ACGGCGTGTCTTCGAAGCTTCAGCAACACCGAGACCCTTACCAAAAAGAA
TAAGTTCTTCTGTGAGAGCTGCAATGCACTGCAGCAGGAAGCCGAGAAGA
CGATTCAACTCAAAAGGCTTCCTCGCGTTCTGACGCTGCACCTGAAGCGC
TTCAAGTACGTCGAGTCTCTCGAGAGCTTCTCGAAGCTCTCGCACCGAGT
GGTGTTCCCTCTTGAGCTGCGTACGCCCAACATGACGGACGGACAGGGCG
AGGCGGATGACGATGGTCGTTTGTACAGGCAAGTGGGGGCCTAACAGGAA
GCCGAGAAGACGATTCAACTCAAAAGGCTTCCTCGCGTTCTGACGCTGCA
CCTGAAGCGCTTCAAGTACGTCGAGTCTCTCGAGAGCTTCTCGAAGCTCT
CGCACCGAGTGGTGTTCCCTCTTGAGCTGCGTACGCCCAACATGACGGAC
GGACAGGGCGAGGCGGATGACGATGGTCGTTTGTACAGGCAAGTGGGGGC
CTAA
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