mRNA_H-elongata_contig207694.5973.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207694.5973.1
Unique NamemRNA_H-elongata_contig207694.5973.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207694.5973.1 vs. uniprot
Match: D8LDU7_ECTSI (BSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.410e-13
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:  151 VSRLKKVLREERAQHEEMLLASRQAANEAVEAALSSADVDREEACAEVTALMRGE 315
            +SRLKK  REERA+HE MLLASRQAANEAVEAALSSAD DREEACAE+ A M+ E
Sbjct:  409 LSRLKKAFREERAEHEAMLLASRQAANEAVEAALSSADADREEACAELEASMKAE 463
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207694.5973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDU7_ECTSI1.410e-1380.00BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207694contigH-elongata_contig207694:317..1052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.9474797-CDS-H-elongata_contig207694:316..4131622930160.9474797-CDS-H-elongata_contig207694:316..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207694 317..413 -
1691679304.5630305-CDS-H-elongata_contig207694:316..4131691679304.5630305-CDS-H-elongata_contig207694:316..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207694 317..413 -
1622930160.9685972-CDS-H-elongata_contig207694:834..10521622930160.9685972-CDS-H-elongata_contig207694:834..1052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207694 835..1052 -
1691679304.5775628-CDS-H-elongata_contig207694:834..10521691679304.5775628-CDS-H-elongata_contig207694:834..1052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207694 835..1052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207694.5973.1prot_H-elongata_contig207694.5973.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207694 317..1052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207694.5973.1

>prot_H-elongata_contig207694.5973.1 ID=prot_H-elongata_contig207694.5973.1|Name=mRNA_H-elongata_contig207694.5973.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
ARATTAEREAKETISSLKEAAEGSTSDDIDEKAITTVGDESGAEAVAARE
VSRLKKVLREERAQHEEMLLASRQAANEAVEAALSSADVDREEACAEVTA
LMRGE
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mRNA from alignment at H-elongata_contig207694:317..1052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207694.5973.1 ID=mRNA_H-elongata_contig207694.5973.1|Name=mRNA_H-elongata_contig207694.5973.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=736bp|location=Sequence derived from alignment at H-elongata_contig207694:317..1052- (Himanthalia elongata Himel1 dioecious)
GCCAGAGCGACCACTGCCGAAAGGGAGGCCAAGGAAACAATTTCATCTCT
GAAGGAGGCGGCGGAAGGCAGTACATCAGATGATATCGACGAGAAGGCAA
TTACTACCGTGGGCGATGAAAGCGGGGCAGAGGCGGTGGCCGCGCGAGAG
GTTTCGAGGCTCAAGAAAGTGCTGCGCGAGGAGCGGGCGCAACACGAGGA
AATGTTGCTGGCCTCCAGGTGTGTGTGTGTGTGTCGCGTGTCGTTTGCGT
TCGTCGTCTGGACCAGTCTTAGACATTCTTCAATGCGATCGAAAGAGGCC
TTCTAGAGTAGATACGTGTGCATCGCGTGATAGCCACCGTTGCGCTTGTT
CTTTTCTATCCATCTGGCGGACGAGGGTGGTGATGAGATATTTTAAGCTA
TTCCTGATAACGCCGTCTTGGTTGCCACGGCGATGAAGTGCGGCCTGTTC
GACTCTGTCGCGCGAGGCAGAGACGGCAAGACACGCAGCTTGTGTGCTGA
GATCGTGATGGTCAAGTTGTCTTTGACGTCAGATTATCTTTTTTCAACTT
GGTGCTGAACCCACTCCATTTCGTTGTGGGGGTATACGGTGGTGTCTTCG
TTTTATCTCTTTTTATTTTGTTTTTTTTTATAAGCGTAGGCAGGCGGCGA
ATGAGGCGGTGGAAGCGGCGCTGAGCTCTGCCGACGTGGACAGGGAGGAA
GCATGCGCCGAAGTAACAGCCTTGATGCGGGGCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig207694:317..1052-

>mRNA_H-elongata_contig207694.5973.1 ID=mRNA_H-elongata_contig207694.5973.1|Name=mRNA_H-elongata_contig207694.5973.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig207694:317..1052- (Himanthalia elongata Himel1 dioecious)
GCCAGAGCGACCACTGCCGAAAGGGAGGCCAAGGAAACAATTTCATCTCT
GAAGGAGGCGGCGGAAGGCAGTACATCAGATGATATCGACGAGAAGGCAA
TTACTACCGTGGGCGATGAAAGCGGGGCAGAGGCGGTGGCCGCGCGAGAG
GTTTCGAGGCTCAAGAAAGTGCTGCGCGAGGAGCGGGCGCAACACGAGGA
AATGTTGCTGGCCTCCAGGCCAGAGCGACCACTGCCGAAAGGGAGGCCAA
GGAAACAATTTCATCTCTGAAGGAGGCGGCGGAAGGCAGTACATCAGATG
ATATCGACGAGAAGGCAATTACTACCGTGGGCGATGAAAGCGGGGCAGAG
GCGGTGGCCGCGCGAGAGGTTTCGAGGCTCAAGAAAGTGCTGCGCGAGGA
GCGGGCGCAACACGAGGAAATGTTGCTGGCCTCCAGGCAGGCGGCGAATG
AGGCGGTGGAAGCGGCGCTGAGCTCTGCCGACGTGGACAGGGAGGAAGCA
TGCGCCGAAGTAACAGCCTTGATGCGGGGCGAGGCAGGCGGCGAATGAGG
CGGTGGAAGCGGCGCTGAGCTCTGCCGACGTGGACAGGGAGGAAGCATGC
GCCGAAGTAACAGCCTTGATGCGGGGCGAG
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