mRNA_H-elongata_contig207606.5967.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207606.5967.1
Unique NamemRNA_H-elongata_contig207606.5967.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207606.5967.1 vs. uniprot
Match: D7FQM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM3_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 3.160e-80
Identity = 126/139 (90.65%), Postives = 129/139 (92.81%), Query Frame = 1 
Query:    1 QEAHAAMVRGMVDQQTSQIRDAADVGEKVDAAAEGLFREHFAWLLDLWVQVKSLAPTRLFIATSWASLVDVQARVSKGKGSTKEAWNFTLARFASWAPRLKAWMNHKDIQKVAPTSGRNTKRTTHELSSTTFLCGRRRR 417
            QEAHAAMVRGMVDQQTSQIRDAADVGEKVDAAAEGLFREHF WLLDLW+QVKSLAPTRLF ATSWA LVDVQARVSKGKGSTKEA NFTLARFASWAPRLKAW+NH+DIQKVA TSGRNTKRT    SST FLCGRRRR
Sbjct:   25 QEAHAAMVRGMVDQQTSQIRDAADVGEKVDAAAEGLFREHFPWLLDLWIQVKSLAPTRLFNATSWALLVDVQARVSKGKGSTKEASNFTLARFASWAPRLKAWINHEDIQKVARTSGRNTKRTR---SSTVFLCGRRRR 160
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BLAST of mRNA_H-elongata_contig207606.5967.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.560e-20
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QEAHAAMVRGMVDQQTSQIRDAADVGEKVDAAAEGLFREHFAWLLDLWVQ 150
            QEAHAAMVRGMVDQQTSQIRDAADVGEKVDAAAEGLFREHF WLLDL VQ
Sbjct:  120 QEAHAAMVRGMVDQQTSQIRDAADVGEKVDAAAEGLFREHFPWLLDLGVQ 169
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BLAST of mRNA_H-elongata_contig207606.5967.1 vs. uniprot
Match: D8LQS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.020e-16
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 QEAHAAMVRGMVDQQTSQIRDAADVGEKVDAAAEGLFREHF 123
            QEAHAAMVRGMVDQQTSQIRDAA VGEKVDAAAEGLFREHF
Sbjct:   25 QEAHAAMVRGMVDQQTSQIRDAAHVGEKVDAAAEGLFREHF 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207606.5967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQM3_ECTSI3.160e-8090.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVM7_ECTSI4.560e-2096.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQS2_ECTSI2.020e-1697.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207606contigH-elongata_contig207606:53..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size420
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207606.5967.1prot_H-elongata_contig207606.5967.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207606 71..880 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.3294396-UTR-H-elongata_contig207606:52..701622930160.3294396-UTR-H-elongata_contig207606:52..70Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207606 53..70 +
1691679304.3935833-UTR-H-elongata_contig207606:52..701691679304.3935833-UTR-H-elongata_contig207606:52..70Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207606 53..70 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.356143-CDS-H-elongata_contig207606:70..4321622930160.356143-CDS-H-elongata_contig207606:70..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207606 71..432 +
1691679304.4047403-CDS-H-elongata_contig207606:70..4321691679304.4047403-CDS-H-elongata_contig207606:70..432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207606 71..432 +
1622930160.6461525-CDS-H-elongata_contig207606:840..8801622930160.6461525-CDS-H-elongata_contig207606:840..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207606 841..880 +
1691679304.4148033-CDS-H-elongata_contig207606:840..8801691679304.4148033-CDS-H-elongata_contig207606:840..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207606 841..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207606.5967.1

>prot_H-elongata_contig207606.5967.1 ID=prot_H-elongata_contig207606.5967.1|Name=mRNA_H-elongata_contig207606.5967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MVRGMVDQQTSQIRDAADVGEKVDAAAEGLFREHFAWLLDLWVQVKSLAP
TRLFIATSWASLVDVQARVSKGKGSTKEAWNFTLARFASWAPRLKAWMNH
KDIQKVAPTSGRNTKRTTHELSSTTFLCGRRRR*
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mRNA from alignment at H-elongata_contig207606:53..880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207606.5967.1 ID=mRNA_H-elongata_contig207606.5967.1|Name=mRNA_H-elongata_contig207606.5967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at H-elongata_contig207606:53..880+ (Himanthalia elongata Himel1 dioecious)
CAGGAGGCACACGCGGCCATGGTTAGGGGGATGGTCGACCAGCAGACTTC
TCAGATCAGGGACGCTGCTGATGTTGGCGAGAAGGTGGACGCCGCCGCCG
AAGGTCTTTTTCGCGAGCACTTTGCTTGGCTTCTTGACCTCTGGGTACAG
GTCAAGTCCCTTGCCCCCACCCGTTTGTTTATAGCGACATCGTGGGCTTC
GCTAGTGGATGTCCAAGCTAGAGTCAGCAAAGGAAAGGGGTCAACGAAGG
AAGCGTGGAATTTCACCTTGGCCCGGTTCGCCAGTTGGGCGCCACGACTG
AAGGCGTGGATGAATCATAAGGATATCCAGAAGGTGGCACCGACGAGTGG
TAGAAACACCAAACGAACCACGCATGAGCTGTTTGGCATCATCAACCAAG
TGGATGAGGTGCGTATCGGCTATAACTAATTGGAAATCTTCCATAGTTTG
TCATAGTATGTGTGCACAAGTCGTTCTAATAATTTGAGGTGTAATTATCT
AGCGCCCGAATAAAAACCGCCCAAGAATCAAGACCGAGTGCCCTGAGTGT
GTACAGCGAACGGCACCGGGATGTTACCCGAGACCCGTGCCTCTTCTTGG
GGGAACAGGCCACCCACTATTGTAGTCCGTATGCTACGTTTATTGTAGGC
TTCAGGTTAGGCAACGTTCAGTCGTTTGTATCTTGTTTGGTGTTCAACTG
TAATCTACGACCCCTTCACAACTGTCAACCCGTACACCCCCTTCGCCGCA
TGCTCCGGCTGTTGCTTCTGTACCTTATTGATCACCAGGAGCTCTACGAC
GTTTTTGTGCGGAAGAAGAAGGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig207606:53..880+

>mRNA_H-elongata_contig207606.5967.1 ID=mRNA_H-elongata_contig207606.5967.1|Name=mRNA_H-elongata_contig207606.5967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig207606:53..880+ (Himanthalia elongata Himel1 dioecious)
ATGGTTAGGGGGATGGTCGACCAGCAGACTTCTCAGATCAGGGACGCTGC
TGATGTTGGCGAGAAGGTGGACGCCGCCGCCGAAGGTCTTTTTCGCGAGC
ACTTTGCTTGGCTTCTTGACCTCTGGGTACAGGTCAAGTCCCTTGCCCCC
ACCCGTTTGTTTATAGCGACATCGTGGGCTTCGCTAGTGGATGTCCAAGC
TAGAGTCAGCAAAGGAAAGGGGTCAACGAAGGAAGCGTGGAATTTCACCT
TGGCCCGGTTCGCCAGTTGGGCGCCACGACTGAAGGCGTGGATGAATCAT
AAGGATATCCAGAAGGTGGCACCGACGAGTGGTAGAAACACCAAACGAAC
CACGCATGAGCTATGGTTAGGGGGATGGTCGACCAGCAGACTTCTCAGAT
CAGGGACGCTGCTGATGTTGGCGAGAAGGTGGACGCCGCCGCCGAAGGTC
TTTTTCGCGAGCACTTTGCTTGGCTTCTTGACCTCTGGGTACAGGTCAAG
TCCCTTGCCCCCACCCGTTTGTTTATAGCGACATCGTGGGCTTCGCTAGT
GGATGTCCAAGCTAGAGTCAGCAAAGGAAAGGGGTCAACGAAGGAAGCGT
GGAATTTCACCTTGGCCCGGTTCGCCAGTTGGGCGCCACGACTGAAGGCG
TGGATGAATCATAAGGATATCCAGAAGGTGGCACCGACGAGTGGTAGAAA
CACCAAACGAACCACGCATGAGCTGAGCTCTACGACGTTTTTGTGCGGAA
GAAGAAGGAGGTGAGAGCTCTACGACGTTTTTGTGCGGAAGAAGAAGGAG
GTGA
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