mRNA_H-elongata_contig2076.5966.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2076.5966.1
Unique NamemRNA_H-elongata_contig2076.5966.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig2076.5966.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.540e-12
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:   16 PTEEATEGEKAKYIAALNSTVLSVPPREYVFILVNANTRTGKRGEGGEEAESKVLGTYGPGVLNENGKQLLGFAKNNKLTLLNTVF 273
            PTE +T   K  +   L+S V  +P +E V++L++AN RTG R +GG+    +V+G YG   LN+NG  LL FA  N+L L NT F
Sbjct:  172 PTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDGGD---GRVIGMYGRDELNDNGMLLLNFATENRLALTNTFF 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2076.5966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBD7_9PHAE3.540e-1244.19Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2076contigH-elongata_contig2076:2409..2681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.2848482-CDS-H-elongata_contig2076:2408..26811622930160.2848482-CDS-H-elongata_contig2076:2408..2681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2076 2409..2681 +
1691679304.3847356-CDS-H-elongata_contig2076:2408..26811691679304.3847356-CDS-H-elongata_contig2076:2408..2681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2076 2409..2681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2076.5966.1prot_H-elongata_contig2076.5966.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2076 2409..2681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2076.5966.1

>prot_H-elongata_contig2076.5966.1 ID=prot_H-elongata_contig2076.5966.1|Name=mRNA_H-elongata_contig2076.5966.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MVPYTPTEEATEGEKAKYIAALNSTVLSVPPREYVFILVNANTRTGKRGE
GGEEAESKVLGTYGPGVLNENGKQLLGFAKNNKLTLLNTVF
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mRNA from alignment at H-elongata_contig2076:2409..2681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2076.5966.1 ID=mRNA_H-elongata_contig2076.5966.1|Name=mRNA_H-elongata_contig2076.5966.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at H-elongata_contig2076:2409..2681+ (Himanthalia elongata Himel1 dioecious)
ATGGTACCCTACACTCCGACCGAGGAAGCGACGGAAGGGGAGAAGGCCAA
GTACATCGCAGCCCTAAACAGCACAGTATTATCCGTTCCCCCTCGGGAAT
ACGTCTTCATTTTGGTCAACGCGAATACCAGGACAGGGAAAAGGGGTGAG
GGAGGCGAGGAAGCAGAAAGCAAGGTTTTGGGCACATATGGCCCAGGCGT
GTTGAACGAAAACGGCAAACAACTGCTGGGTTTCGCAAAAAACAACAAAC
TCACTCTTCTAAACACTGTTTTT
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Coding sequence (CDS) from alignment at H-elongata_contig2076:2409..2681+

>mRNA_H-elongata_contig2076.5966.1 ID=mRNA_H-elongata_contig2076.5966.1|Name=mRNA_H-elongata_contig2076.5966.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig2076:2409..2681+ (Himanthalia elongata Himel1 dioecious)
ATGGTACCCTACACTCCGACCGAGGAAGCGACGGAAGGGGAGAAGGCCAA
GTACATCGCAGCCCTAAACAGCACAGTATTATCCGTTCCCCCTCGGGAAT
ACGTCTTCATTTTGGTCAACGCGAATACCAGGACAGGGAAAAGGGGTGAG
GGAGGCGAGGAAGCAGAAAGCAAGGTTTTGGGCACATATGGCCCAGGCGT
GTTGAACGAAAACGGCAAACAACTGCTGGGTTTCGCAAAAAACAACAAAC
TCACTCTTCTAAACACTGTTTTTATGGTACCCTACACTCCGACCGAGGAA
GCGACGGAAGGGGAGAAGGCCAAGTACATCGCAGCCCTAAACAGCACAGT
ATTATCCGTTCCCCCTCGGGAATACGTCTTCATTTTGGTCAACGCGAATA
CCAGGACAGGGAAAAGGGGTGAGGGAGGCGAGGAAGCAGAAAGCAAGGTT
TTGGGCACATATGGCCCAGGCGTGTTGAACGAAAACGGCAAACAACTGCT
GGGTTTCGCAAAAAACAACAAACTCACTCTTCTAAACACTGTTTTT
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