mRNA_H-elongata_contig207555.5963.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207555.5963.1
Unique NamemRNA_H-elongata_contig207555.5963.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: D8LSM6_ECTSI (GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM6_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.830e-45
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 1
Query:   13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
            +SSLLN+LFGETRSIVS+VPGTTRDSIDA+FERGGRTYRLVDTAGIRRKGK   VDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ
Sbjct:  410 KSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKGK---VDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 496          
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: A0A836CJC9_9STRA (GTPase Der n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC9_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.940e-37
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 1
Query:   13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
            +SSLLNKL+G+ R+IVS+V GTTRD+IDALFERG RTYRL+DTAGIRRK K   ++YGNEFFM+NRAFKAIRR+DVVLL++DV  GI DQ
Sbjct:   64 KSSLLNKLYGQERAIVSDVAGTTRDTIDALFERGDRTYRLIDTAGIRRKKK---IEYGNEFFMINRAFKAIRRSDVVLLVIDVVDGIKDQ 150          
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: A0A482SQ71_9ARCH (GTP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQ71_9ARCH)

HSP 1 Score: 122 bits (306), Expect = 1.350e-32
Identity = 57/90 (63.33%), Postives = 77/90 (85.56%), Query Frame = 1
Query:   13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
            +SSLLN+L+G+ RSIVSE+ GTTRD++D + ++G R+YR++DTAGIR++GK   V+YG EFFMVNRAFKAIRRADVV+L++D   G+ DQ
Sbjct:   22 KSSLLNRLYGQDRSIVSEIAGTTRDAVDVVVQKGVRSYRIIDTAGIRKRGK---VEYGPEFFMVNRAFKAIRRADVVVLVLDALQGVVDQ 108          
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: UPI0019FDA522 (Ribosome biogenesis GTPase Der n=1 Tax=Geminocystis sp. M7585_C2015_104 TaxID=2774334 RepID=UPI0019FDA522)

HSP 1 Score: 125 bits (315), Expect = 2.740e-32
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 1
Query:   13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
            +SSLLN L GE R+IVS +PGTTRD+ID L ER G+ YR++DTAGIRRK    NV+YG EFF +NRAFKAIRRADVVLL++DV  G+TDQ
Sbjct:  188 KSSLLNALTGEKRAIVSPIPGTTRDAIDTLVERNGKVYRIIDTAGIRRK---KNVEYGAEFFGINRAFKAIRRADVVLLVIDVLEGVTDQ 274          
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: K9W310_9CYAN (GTPase Der n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9W310_9CYAN)

HSP 1 Score: 125 bits (315), Expect = 2.810e-32
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1
Query:   13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
            +SSLLN L GE RSIVS + GTTRD+ID++ ER G TYRL+DTAGIRRK    NV+YG+EFF +NRAFKAIRRADVVLL++DV  G+TDQ
Sbjct:  189 KSSLLNALTGENRSIVSPISGTTRDAIDSVVERNGTTYRLIDTAGIRRK---KNVEYGSEFFGINRAFKAIRRADVVLLVIDVLDGVTDQ 275          
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: A0A6P1AIT2_9CYAN (GTPase Der n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AIT2_9CYAN)

HSP 1 Score: 124 bits (312), Expect = 7.410e-32
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 1
Query:   13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
            +SSLLN   GETR+IVS + GTTRD+ID + ER G TYRL+DTAGIRRK    NVDYG EFF +NRAFKAIRRADVVLL++D   G+TDQ
Sbjct:  189 KSSLLNAFLGETRAIVSPISGTTRDAIDTVVERNGNTYRLIDTAGIRRK---KNVDYGAEFFSINRAFKAIRRADVVLLVLDALDGVTDQ 275          
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: A0A0D6AJ67_9CHRO (GTPase Der n=5 Tax=Geminocystis TaxID=669357 RepID=A0A0D6AJ67_9CHRO)

HSP 1 Score: 122 bits (307), Expect = 3.840e-31
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 1
Query:   13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
            +SSLLN L GE RSIVS V GTTRD+ID + ER G+TYRL+DTAGIRRK    NVDYG EFF +NRAFKAI+RADVVL ++DV  G+T+Q
Sbjct:  188 KSSLLNALTGENRSIVSPVSGTTRDAIDMVVERNGKTYRLIDTAGIRRK---KNVDYGAEFFGINRAFKAIKRADVVLFVIDVLDGVTEQ 274          
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: A0A2T1EEI8_9CHRO (GTPase Der n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1EEI8_9CHRO)

HSP 1 Score: 122 bits (306), Expect = 5.720e-31
Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query:   13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
            +SSLLN   GE R+IVS + GTTRD+ID + ER G+TYRL+DTAGIRRK    NV+YG EFF +NRAFKAIRRADVVLL++D E G+T+Q
Sbjct:  189 KSSLLNAFVGENRAIVSPISGTTRDAIDTVIERDGKTYRLIDTAGIRRK---KNVEYGAEFFGINRAFKAIRRADVVLLVLDAEDGVTEQ 275          
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: UPI001FF47362 (ribosome biogenesis GTPase Der n=1 Tax=Synechococcus sp. C9 TaxID=102119 RepID=UPI001FF47362)

HSP 1 Score: 122 bits (305), Expect = 7.020e-31
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 1
Query:   13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
            +SSLLN L GE R+IVS + GTTRDS+D L ER G+ Y L+DTAGIRRK     VDYG EFF +NRAFKAIRRADVVLL++DV AG+TDQ
Sbjct:  189 KSSLLNALVGEERAIVSPIAGTTRDSVDTLVERDGQAYWLIDTAGIRRK---KYVDYGPEFFSINRAFKAIRRADVVLLVLDVTAGVTDQ 275          
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: K9Z7A3_CYAAP (GTPase Der n=3 Tax=Cyanobacteria TaxID=1117 RepID=K9Z7A3_CYAAP)

HSP 1 Score: 122 bits (305), Expect = 7.520e-31
Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query:   13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
            +SSLLN L GE R+IVS + GTTRD+ID + ER G+TYRL+DTAGIRRK    NVDYG EFF +NRAFKAI+RADVVL ++DV  G+T+Q
Sbjct:  188 KSSLLNALTGEKRAIVSPISGTTRDAIDMVVERDGKTYRLIDTAGIRRK---KNVDYGTEFFSINRAFKAIKRADVVLFVIDVLDGVTEQ 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSM6_ECTSI2.830e-4592.22GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CJC9_9STRA2.940e-3774.44GTPase Der n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A482SQ71_9ARCH1.350e-3263.33GTP-binding protein n=1 Tax=archaeon TaxID=1906665... [more]
UPI0019FDA5222.740e-3268.89Ribosome biogenesis GTPase Der n=1 Tax=Geminocysti... [more]
K9W310_9CYAN2.810e-3270.00GTPase Der n=1 Tax=Crinalium epipsammum PCC 9333 T... [more]
A0A6P1AIT2_9CYAN7.410e-3268.89GTPase Der n=1 Tax=Kamptonema sp. SIO1D9 TaxID=260... [more]
A0A0D6AJ67_9CHRO3.840e-3168.89GTPase Der n=5 Tax=Geminocystis TaxID=669357 RepID... [more]
A0A2T1EEI8_9CHRO5.720e-3166.67GTPase Der n=2 Tax=Cyanobacteria TaxID=1117 RepID=... [more]
UPI001FF473627.020e-3168.89ribosome biogenesis GTPase Der n=1 Tax=Synechococc... [more]
K9Z7A3_CYAAP7.520e-3166.67GTPase Der n=3 Tax=Cyanobacteria TaxID=1117 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207555contigH-elongata_contig207555:252..805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.2e-37
Seed eggNOG ortholog2880.D8LSM6
KEGG rclassRC00053,RC00209,RC00870
KEGG koko:K03650,ko:K03977
KEGG ReactionR08701
EggNOG free text desc.GTP binding
EggNOG OGsCOG0486@1,KOG1191@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.025525-CDS-H-elongata_contig207555:251..3591622930160.025525-CDS-H-elongata_contig207555:251..359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207555 252..359 -
1691679304.2519603-CDS-H-elongata_contig207555:251..3591691679304.2519603-CDS-H-elongata_contig207555:251..359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207555 252..359 -
1622930160.0381484-CDS-H-elongata_contig207555:631..8051622930160.0381484-CDS-H-elongata_contig207555:631..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207555 632..805 -
1691679304.2723722-CDS-H-elongata_contig207555:631..8051691679304.2723722-CDS-H-elongata_contig207555:631..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207555 632..805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207555.5963.1prot_H-elongata_contig207555.5963.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207555 252..805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207555.5963.1

>prot_H-elongata_contig207555.5963.1 ID=prot_H-elongata_contig207555.5963.1|Name=mRNA_H-elongata_contig207555.5963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MLPRRSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGI
RRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ
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mRNA from alignment at H-elongata_contig207555:252..805-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207555.5963.1 ID=mRNA_H-elongata_contig207555.5963.1|Name=mRNA_H-elongata_contig207555.5963.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=554bp|location=Sequence derived from alignment at H-elongata_contig207555:252..805- (Himanthalia elongata Himel1 dioecious)
ATGTTGCCCCGCAGGTCGAGTCTTCTTAACAAGCTCTTCGGGGAAACACG GTCGATTGTGAGCGAAGTTCCCGGGACGACTCGAGACTCCATCGATGCCC TGTTTGAGCGCGGTGGGAGGACCTATCGACTGGTGGACACAGCGGGTATT CGCCGCAAGGGAAAGGCAAGCAACGTTGAAATCTAGAGAAAAAAAAATAG ATACGCCTATGAATAGAAAAAGAGAAAACAATATTGTTATATTGTATATT GTATATAGGTAATATAGACCTATTGACGAAGACACTAGACGCAAAGATCA AACGACCCAAAAGAAACCCTCAAGATACAGAGACAGACACGGGTATGATA CACGAAAATCTATAATGTGCTTCGATTGGTAATGACACGTCATTTCCACA CTGCTGCGGTGTTGTCGCGATCGATGGTGGCATGGCGATGGCGCAGGTGG ACTACGGGAACGAGTTTTTCATGGTAAATCGGGCGTTCAAGGCCATCCGC CGGGCTGACGTTGTCCTCCTGATGGTCGATGTCGAGGCTGGAATCACGGA CCAG
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Coding sequence (CDS) from alignment at H-elongata_contig207555:252..805-

>mRNA_H-elongata_contig207555.5963.1 ID=mRNA_H-elongata_contig207555.5963.1|Name=mRNA_H-elongata_contig207555.5963.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig207555:252..805- (Himanthalia elongata Himel1 dioecious)
ATGTTGCCCCGCAGGTCGAGTCTTCTTAACAAGCTCTTCGGGGAAACACG
GTCGATTGTGAGCGAAGTTCCCGGGACGACTCGAGACTCCATCGATGCCC
TGTTTGAGCGCGGTGGGAGGACCTATCGACTGGTGGACACAGCGGGTATT
CGCCGCAAGGGAAAGGCAAGCAACATGTTGCCCCGCAGGTCGAGTCTTCT
TAACAAGCTCTTCGGGGAAACACGGTCGATTGTGAGCGAAGTTCCCGGGA
CGACTCGAGACTCCATCGATGCCCTGTTTGAGCGCGGTGGGAGGACCTAT
CGACTGGTGGACACAGCGGGTATTCGCCGCAAGGGAAAGGCAAGCAACGT
GGACTACGGGAACGAGTTTTTCATGGTAAATCGGGCGTTCAAGGCCATCC
GCCGGGCTGACGTTGTCCTCCTGATGGTCGATGTCGAGGCTGGAATCACG
GACCAGGTGGACTACGGGAACGAGTTTTTCATGGTAAATCGGGCGTTCAA
GGCCATCCGCCGGGCTGACGTTGTCCTCCTGATGGTCGATGTCGAGGCTG
GAATCACGGACCAG
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