mRNA_H-elongata_contig207555.5963.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: D8LSM6_ECTSI (GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM6_ECTSI) HSP 1 Score: 163 bits (413), Expect = 2.830e-45 Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 1
Query: 13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
+SSLLN+LFGETRSIVS+VPGTTRDSIDA+FERGGRTYRLVDTAGIRRKGK VDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ
Sbjct: 410 KSSLLNRLFGETRSIVSDVPGTTRDSIDAMFERGGRTYRLVDTAGIRRKGK---VDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 496
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: A0A836CJC9_9STRA (GTPase Der n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC9_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.940e-37 Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 1
Query: 13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
+SSLLNKL+G+ R+IVS+V GTTRD+IDALFERG RTYRL+DTAGIRRK K ++YGNEFFM+NRAFKAIRR+DVVLL++DV GI DQ
Sbjct: 64 KSSLLNKLYGQERAIVSDVAGTTRDTIDALFERGDRTYRLIDTAGIRRKKK---IEYGNEFFMINRAFKAIRRSDVVLLVIDVVDGIKDQ 150
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: A0A482SQ71_9ARCH (GTP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQ71_9ARCH) HSP 1 Score: 122 bits (306), Expect = 1.350e-32 Identity = 57/90 (63.33%), Postives = 77/90 (85.56%), Query Frame = 1
Query: 13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
+SSLLN+L+G+ RSIVSE+ GTTRD++D + ++G R+YR++DTAGIR++GK V+YG EFFMVNRAFKAIRRADVV+L++D G+ DQ
Sbjct: 22 KSSLLNRLYGQDRSIVSEIAGTTRDAVDVVVQKGVRSYRIIDTAGIRKRGK---VEYGPEFFMVNRAFKAIRRADVVVLVLDALQGVVDQ 108
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: UPI0019FDA522 (Ribosome biogenesis GTPase Der n=1 Tax=Geminocystis sp. M7585_C2015_104 TaxID=2774334 RepID=UPI0019FDA522) HSP 1 Score: 125 bits (315), Expect = 2.740e-32 Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 1
Query: 13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
+SSLLN L GE R+IVS +PGTTRD+ID L ER G+ YR++DTAGIRRK NV+YG EFF +NRAFKAIRRADVVLL++DV G+TDQ
Sbjct: 188 KSSLLNALTGEKRAIVSPIPGTTRDAIDTLVERNGKVYRIIDTAGIRRK---KNVEYGAEFFGINRAFKAIRRADVVLLVIDVLEGVTDQ 274
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: K9W310_9CYAN (GTPase Der n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9W310_9CYAN) HSP 1 Score: 125 bits (315), Expect = 2.810e-32 Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1
Query: 13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
+SSLLN L GE RSIVS + GTTRD+ID++ ER G TYRL+DTAGIRRK NV+YG+EFF +NRAFKAIRRADVVLL++DV G+TDQ
Sbjct: 189 KSSLLNALTGENRSIVSPISGTTRDAIDSVVERNGTTYRLIDTAGIRRK---KNVEYGSEFFGINRAFKAIRRADVVLLVIDVLDGVTDQ 275
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: A0A6P1AIT2_9CYAN (GTPase Der n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AIT2_9CYAN) HSP 1 Score: 124 bits (312), Expect = 7.410e-32 Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 1
Query: 13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
+SSLLN GETR+IVS + GTTRD+ID + ER G TYRL+DTAGIRRK NVDYG EFF +NRAFKAIRRADVVLL++D G+TDQ
Sbjct: 189 KSSLLNAFLGETRAIVSPISGTTRDAIDTVVERNGNTYRLIDTAGIRRK---KNVDYGAEFFSINRAFKAIRRADVVLLVLDALDGVTDQ 275
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: A0A0D6AJ67_9CHRO (GTPase Der n=5 Tax=Geminocystis TaxID=669357 RepID=A0A0D6AJ67_9CHRO) HSP 1 Score: 122 bits (307), Expect = 3.840e-31 Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 1
Query: 13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
+SSLLN L GE RSIVS V GTTRD+ID + ER G+TYRL+DTAGIRRK NVDYG EFF +NRAFKAI+RADVVL ++DV G+T+Q
Sbjct: 188 KSSLLNALTGENRSIVSPVSGTTRDAIDMVVERNGKTYRLIDTAGIRRK---KNVDYGAEFFGINRAFKAIKRADVVLFVIDVLDGVTEQ 274
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: A0A2T1EEI8_9CHRO (GTPase Der n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1EEI8_9CHRO) HSP 1 Score: 122 bits (306), Expect = 5.720e-31 Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query: 13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
+SSLLN GE R+IVS + GTTRD+ID + ER G+TYRL+DTAGIRRK NV+YG EFF +NRAFKAIRRADVVLL++D E G+T+Q
Sbjct: 189 KSSLLNAFVGENRAIVSPISGTTRDAIDTVIERDGKTYRLIDTAGIRRK---KNVEYGAEFFGINRAFKAIRRADVVLLVLDAEDGVTEQ 275
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: UPI001FF47362 (ribosome biogenesis GTPase Der n=1 Tax=Synechococcus sp. C9 TaxID=102119 RepID=UPI001FF47362) HSP 1 Score: 122 bits (305), Expect = 7.020e-31 Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 1
Query: 13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
+SSLLN L GE R+IVS + GTTRDS+D L ER G+ Y L+DTAGIRRK VDYG EFF +NRAFKAIRRADVVLL++DV AG+TDQ
Sbjct: 189 KSSLLNALVGEERAIVSPIAGTTRDSVDTLVERDGQAYWLIDTAGIRRK---KYVDYGPEFFSINRAFKAIRRADVVLLVLDVTAGVTDQ 275
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Match: K9Z7A3_CYAAP (GTPase Der n=3 Tax=Cyanobacteria TaxID=1117 RepID=K9Z7A3_CYAAP) HSP 1 Score: 122 bits (305), Expect = 7.520e-31 Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query: 13 RSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIRRKGKASNVDYGNEFFMVNRAFKAIRRADVVLLMVDVEAGITDQ 282
+SSLLN L GE R+IVS + GTTRD+ID + ER G+TYRL+DTAGIRRK NVDYG EFF +NRAFKAI+RADVVL ++DV G+T+Q
Sbjct: 188 KSSLLNALTGEKRAIVSPISGTTRDAIDMVVERDGKTYRLIDTAGIRRK---KNVDYGTEFFSINRAFKAIKRADVVLFVIDVLDGVTEQ 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207555.5963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig207555.5963.1 >prot_H-elongata_contig207555.5963.1 ID=prot_H-elongata_contig207555.5963.1|Name=mRNA_H-elongata_contig207555.5963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp MLPRRSSLLNKLFGETRSIVSEVPGTTRDSIDALFERGGRTYRLVDTAGIback to top mRNA from alignment at H-elongata_contig207555:252..805- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig207555.5963.1 ID=mRNA_H-elongata_contig207555.5963.1|Name=mRNA_H-elongata_contig207555.5963.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=554bp|location=Sequence derived from alignment at H-elongata_contig207555:252..805- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig207555:252..805- >mRNA_H-elongata_contig207555.5963.1 ID=mRNA_H-elongata_contig207555.5963.1|Name=mRNA_H-elongata_contig207555.5963.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig207555:252..805- (Himanthalia elongata Himel1 dioecious)back to top |