mRNA_H-elongata_contig207510.5961.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207510.5961.1
Unique NamemRNA_H-elongata_contig207510.5961.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388L851_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L851_CHABU)

HSP 1 Score: 60.5 bits (145), Expect = 5.370e-9
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   19 CCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALF------RKKTGLSLVTPNATRFAT 201
            C AH + LL+KDI+K  W + I+KR   +VKF+KNHH T ALF       KKT   LV P   RFA+
Sbjct:  268 CAAHTLSLLLKDISKLSWVSKIVKRAKMMVKFIKNHHRTVALFSACSFEEKKT---LVMPTEVRFAS 331          
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A7R9VUK9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VUK9_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 9.830e-9
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   13 MKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK--KTGLSLVTPNATRFATNLI 210
            M C  H +DLL++DI K +WAA+II+   +VVK+ K H +T    R+  K  L L+ P  TRF T  +
Sbjct:   38 MPCAVHCIDLLLEDIGKLDWAAEIIEEGKDVVKYFKAHQWTLGELRQISKVKLELLLPGDTRFGTEFL 105          
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A7R9V4L6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V4L6_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 5.200e-8
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   13 MKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK-KTGLSLVTPNATRFATNLI 210
            + C AH +DLL++DI K  WAA +++    VVKF++ H +  AL R   +   L+ P  TRF T+ +
Sbjct:   17 LPCAAHCLDLLLEDIGKLPWAAQLVEHGRSVVKFIRGHEWCLALVRSIGSKKELLFPGETRFGTHYL 83          
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388K5Z3_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K5Z3_CHABU)

HSP 1 Score: 55.8 bits (133), Expect = 2.290e-7
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1
Query:   19 CCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK---KTGLSLVTPNATRFAT 201
            C AH + LL+K I K  W A I+KR   +VKF++NHH T ALF     +   +L+ P   RFA+
Sbjct:  388 CAAHTLSLLLKGIAKLSWVATIVKRVKMMVKFIRNHHCTVALFSACSLEEMKTLIMPTKVRFAS 451          
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388ME37_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388ME37_CHABU)

HSP 1 Score: 55.5 bits (132), Expect = 3.110e-7
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   13 MKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK---KTGLSLVTPNATRFAT 201
            + C AH + LLMK+I   +W A  +KR   +V+F+KNHH T AL+ +   +   +LV P   RFA+
Sbjct:  321 LPCAAHTLSLLMKEIANLQWVAKHVKRAKMMVRFIKNHHRTVALYARCSLEETKTLVMPTEVRFAS 386          
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388KII2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KII2_CHABU)

HSP 1 Score: 54.3 bits (129), Expect = 8.070e-7
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 1
Query:    4 LTGMKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK---KTGLSLVTPNATRF 195
            +  + C AH + LL+K I K  W A I+KR   +VKF++NHH T ALF     +   +L+ P   RF
Sbjct:  747 IPXVXCAAHTLSLLLKGIAKLPWVATIVKRVKMMVKFIRNHHRTMALFSACSLEETKTLIMPTXVRF 813          
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388LM13_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LM13_CHABU)

HSP 1 Score: 53.9 bits (128), Expect = 1.090e-6
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1
Query:   19 CCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK---KTGLSLVTPNATRFAT 201
            C AH + LL+K I K  W A I+KR   +VKF++NHH T ALF     +   +L+ P   RF +
Sbjct:  308 CAAHTLSLLLKGIEKLPWVATIVKRAKMMVKFIRNHHRTVALFSACSLEETKTLIMPTEVRFTS 371          
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: UPI0005D4203C (uncharacterized protein LOC105420984 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D4203C)

HSP 1 Score: 52.0 bits (123), Expect = 5.220e-6
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   19 CCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRKKT-GLSLVTPNATRFATNLI 210
            C AH +DL++ D+ K +W  ++I   +++ KFV NH +  A FRK + G  L+  + T +AT+ I
Sbjct:  363 CTAHVIDLILHDLEKFDWVKELIGDGMKISKFVYNHAWILAKFRKLSIGQDLIHSSRTHYATSFI 427          
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388LTY4_CHABU (Reverse transcriptase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LTY4_CHABU)

HSP 1 Score: 50.1 bits (118), Expect = 2.540e-5
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 1
Query:   19 CCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHF-------TSALFRKKTGLSLVTPNATRFATNLI 210
            C AH +DLLM D+ K+EWAA+II +   VV F + H +       T   F       L+ P ATRF T+ +
Sbjct: 1306 CTAHYMDLLMHDLCKKEWAAEIISKANRVVNFFRAHRWPRSTLRTTLVTFPDLKCSCLLRPAATRFGTHYV 1376          
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388KS02_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KS02_CHABU)

HSP 1 Score: 49.3 bits (116), Expect = 4.660e-5
Identity = 27/73 (36.99%), Postives = 41/73 (56.16%), Query Frame = 1
Query:   13 MKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFR----KKTGLS---LVTPNATRFATNLI 210
            + C AH +DLL+ DI K+EWAA++I +   VV F + H + ++  R    K   L    L+ P  TRF T+ +
Sbjct:  290 LPCTAHFMDLLLHDICKKEWAAEVISKANRVVNFFRGHRWPNSALRTALVKFPDLKCSCLLRPAQTRFGTHYV 362          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A388L851_CHABU5.370e-949.25Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7R9VUK9_9CHLO9.830e-942.65Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7R9V4L6_9CHLO5.200e-838.81Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A388K5Z3_CHABU2.290e-743.75DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388ME37_CHABU3.110e-740.91Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388KII2_CHABU8.070e-740.30Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388LM13_CHABU1.090e-642.19DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
UPI0005D4203C5.220e-636.92uncharacterized protein LOC105420984 n=1 Tax=Ambor... [more]
A0A388LTY4_CHABU2.540e-539.44Reverse transcriptase domain-containing protein n=... [more]
A0A388KS02_CHABU4.660e-536.99DUF659 domain-containing protein n=1 Tax=Chara bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207510contigH-elongata_contig207510:697..909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.9351962-UTR-H-elongata_contig207510:696..7081622930159.9351962-UTR-H-elongata_contig207510:696..708Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207510 697..708 +
1691679304.222253-UTR-H-elongata_contig207510:696..7081691679304.222253-UTR-H-elongata_contig207510:696..708Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207510 697..708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.9488714-CDS-H-elongata_contig207510:708..9091622930159.9488714-CDS-H-elongata_contig207510:708..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207510 709..909 +
1691679304.2309535-CDS-H-elongata_contig207510:708..9091691679304.2309535-CDS-H-elongata_contig207510:708..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207510 709..909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207510.5961.1prot_H-elongata_contig207510.5961.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207510 709..909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207510.5961.1

>prot_H-elongata_contig207510.5961.1 ID=prot_H-elongata_contig207510.5961.1|Name=mRNA_H-elongata_contig207510.5961.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRKKTG
LSLVTPNATRFATNLIF
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mRNA from alignment at H-elongata_contig207510:697..909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207510.5961.1 ID=mRNA_H-elongata_contig207510.5961.1|Name=mRNA_H-elongata_contig207510.5961.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig207510:697..909+ (Himanthalia elongata Himel1 dioecious)
TGGTTGACTGGTATGAAGTGTTGCGCGCACGCAGTCGACCTCCTGATGAA GGACATCACGAAGCAGGAGTGGGCTGCGGACATCATCAAGCGCAACCTCG AAGTCGTCAAGTTCGTCAAGAACCACCACTTCACCAGCGCTCTCTTCCGA AAGAAGACGGGCCTGTCACTCGTCACGCCCAACGCCACACGGTTTGCGAC CAACCTGATCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig207510:697..909+

>mRNA_H-elongata_contig207510.5961.1 ID=mRNA_H-elongata_contig207510.5961.1|Name=mRNA_H-elongata_contig207510.5961.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig207510:697..909+ (Himanthalia elongata Himel1 dioecious)
ATGAAGTGTTGCGCGCACGCAGTCGACCTCCTGATGAAGGACATCACGAA
GCAGGAGTGGGCTGCGGACATCATCAAGCGCAACCTCGAAGTCGTCAAGT
TCGTCAAGAACCACCACTTCACCAGCGCTCTCTTCCGAAAGAAGACGGGC
CTGTCACTCGTCACGCCCAACGCCACACGGTTTGCGACCAACCTGATCTT
CATGAAGTGTTGCGCGCACGCAGTCGACCTCCTGATGAAGGACATCACGA
AGCAGGAGTGGGCTGCGGACATCATCAAGCGCAACCTCGAAGTCGTCAAG
TTCGTCAAGAACCACCACTTCACCAGCGCTCTCTTCCGAAAGAAGACGGG
CCTGTCACTCGTCACGCCCAACGCCACACGGTTTGCGACCAACCTGATCT
TC
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