mRNA_H-elongata_contig207510.5961.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388L851_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L851_CHABU) HSP 1 Score: 60.5 bits (145), Expect = 5.370e-9 Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 19 CCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALF------RKKTGLSLVTPNATRFAT 201
C AH + LL+KDI+K W + I+KR +VKF+KNHH T ALF KKT LV P RFA+
Sbjct: 268 CAAHTLSLLLKDISKLSWVSKIVKRAKMMVKFIKNHHRTVALFSACSFEEKKT---LVMPTEVRFAS 331
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A7R9VUK9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VUK9_9CHLO) HSP 1 Score: 59.7 bits (143), Expect = 9.830e-9 Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 13 MKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK--KTGLSLVTPNATRFATNLI 210
M C H +DLL++DI K +WAA+II+ +VVK+ K H +T R+ K L L+ P TRF T +
Sbjct: 38 MPCAVHCIDLLLEDIGKLDWAAEIIEEGKDVVKYFKAHQWTLGELRQISKVKLELLLPGDTRFGTEFL 105
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A7R9V4L6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V4L6_9CHLO) HSP 1 Score: 54.7 bits (130), Expect = 5.200e-8 Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 13 MKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK-KTGLSLVTPNATRFATNLI 210
+ C AH +DLL++DI K WAA +++ VVKF++ H + AL R + L+ P TRF T+ +
Sbjct: 17 LPCAAHCLDLLLEDIGKLPWAAQLVEHGRSVVKFIRGHEWCLALVRSIGSKKELLFPGETRFGTHYL 83
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388K5Z3_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K5Z3_CHABU) HSP 1 Score: 55.8 bits (133), Expect = 2.290e-7 Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1
Query: 19 CCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK---KTGLSLVTPNATRFAT 201
C AH + LL+K I K W A I+KR +VKF++NHH T ALF + +L+ P RFA+
Sbjct: 388 CAAHTLSLLLKGIAKLSWVATIVKRVKMMVKFIRNHHCTVALFSACSLEEMKTLIMPTKVRFAS 451
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388ME37_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388ME37_CHABU) HSP 1 Score: 55.5 bits (132), Expect = 3.110e-7 Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query: 13 MKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK---KTGLSLVTPNATRFAT 201
+ C AH + LLMK+I +W A +KR +V+F+KNHH T AL+ + + +LV P RFA+
Sbjct: 321 LPCAAHTLSLLMKEIANLQWVAKHVKRAKMMVRFIKNHHRTVALYARCSLEETKTLVMPTEVRFAS 386
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388KII2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KII2_CHABU) HSP 1 Score: 54.3 bits (129), Expect = 8.070e-7 Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 1
Query: 4 LTGMKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK---KTGLSLVTPNATRF 195
+ + C AH + LL+K I K W A I+KR +VKF++NHH T ALF + +L+ P RF
Sbjct: 747 IPXVXCAAHTLSLLLKGIAKLPWVATIVKRVKMMVKFIRNHHRTMALFSACSLEETKTLIMPTXVRF 813
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388LM13_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LM13_CHABU) HSP 1 Score: 53.9 bits (128), Expect = 1.090e-6 Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1
Query: 19 CCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRK---KTGLSLVTPNATRFAT 201
C AH + LL+K I K W A I+KR +VKF++NHH T ALF + +L+ P RF +
Sbjct: 308 CAAHTLSLLLKGIEKLPWVATIVKRAKMMVKFIRNHHRTVALFSACSLEETKTLIMPTEVRFTS 371
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: UPI0005D4203C (uncharacterized protein LOC105420984 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D4203C) HSP 1 Score: 52.0 bits (123), Expect = 5.220e-6 Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 19 CCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRKKT-GLSLVTPNATRFATNLI 210
C AH +DL++ D+ K +W ++I +++ KFV NH + A FRK + G L+ + T +AT+ I
Sbjct: 363 CTAHVIDLILHDLEKFDWVKELIGDGMKISKFVYNHAWILAKFRKLSIGQDLIHSSRTHYATSFI 427
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388LTY4_CHABU (Reverse transcriptase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LTY4_CHABU) HSP 1 Score: 50.1 bits (118), Expect = 2.540e-5 Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 1
Query: 19 CCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHF-------TSALFRKKTGLSLVTPNATRFATNLI 210
C AH +DLLM D+ K+EWAA+II + VV F + H + T F L+ P ATRF T+ +
Sbjct: 1306 CTAHYMDLLMHDLCKKEWAAEIISKANRVVNFFRAHRWPRSTLRTTLVTFPDLKCSCLLRPAATRFGTHYV 1376
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Match: A0A388KS02_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KS02_CHABU) HSP 1 Score: 49.3 bits (116), Expect = 4.660e-5 Identity = 27/73 (36.99%), Postives = 41/73 (56.16%), Query Frame = 1
Query: 13 MKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFR----KKTGLS---LVTPNATRFATNLI 210
+ C AH +DLL+ DI K+EWAA++I + VV F + H + ++ R K L L+ P TRF T+ +
Sbjct: 290 LPCTAHFMDLLLHDICKKEWAAEVISKANRVVNFFRGHRWPNSALRTALVKFPDLKCSCLLRPAQTRFGTHYV 362 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207510.5961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig207510.5961.1 >prot_H-elongata_contig207510.5961.1 ID=prot_H-elongata_contig207510.5961.1|Name=mRNA_H-elongata_contig207510.5961.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp MKCCAHAVDLLMKDITKQEWAADIIKRNLEVVKFVKNHHFTSALFRKKTGback to top mRNA from alignment at H-elongata_contig207510:697..909+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig207510.5961.1 ID=mRNA_H-elongata_contig207510.5961.1|Name=mRNA_H-elongata_contig207510.5961.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig207510:697..909+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig207510:697..909+ >mRNA_H-elongata_contig207510.5961.1 ID=mRNA_H-elongata_contig207510.5961.1|Name=mRNA_H-elongata_contig207510.5961.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig207510:697..909+ (Himanthalia elongata Himel1 dioecious)back to top |