mRNA_H-elongata_contig20751.5959.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20751.5959.1
Unique NamemRNA_H-elongata_contig20751.5959.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20751.5959.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.050e-18
Identity = 53/106 (50.00%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:    1 MEREDFIDLARVSEQVPGKTPAQVLSFYYRYLAAAEPLTDVVYGPKAAETRRQEEVLLDRETDKPPYS----GGHSIHAGSHPASLRTGDVQTLDGSRGASPAVDG 306
            M+REDFID+A+VS++VPGKTPAQVL FY+RYLAAA PLTDVVYGP+AAE R++E++  D    + P +     G    +GS  +       Q   G+R  SP+ +G
Sbjct:  693 MDREDFIDIAKVSKEVPGKTPAQVLQFYFRYLAAARPLTDVVYGPEAAEARKREKLSNDDSDVEIPVTPRGASGRPARSGSDTSPSHRVTKQEPAGTRRVSPSPNG 798
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BLAST of mRNA_H-elongata_contig20751.5959.1 vs. uniprot
Match: D7G9E4_ECTSI (BAH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E4_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.450e-18
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:    1 MEREDFIDLARVSEQVPGKTPAQVLSFYYRYLAAAEPLTDVVYGPKAAETRRQEEVLLDRETDKPPYS----GGHSIHAGSHPASLRTGDVQTLDGSRGASPAVDG 306
            M+RED ID+A+VS++VPGKTPAQVL FY+RYLAAA PLTDVVYGP+AAE R++E++  D    + P +     G    +GS     R    Q   G+R  SP+ +G
Sbjct:  587 MDREDCIDIAKVSKEVPGKTPAQVLQFYFRYLAAARPLTDVVYGPEAAEARKREKLSGDDSDVEVPVTPRGAAGRPARSGSDTTPSRRVTKQEPAGTRRVSPSPNG 692
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BLAST of mRNA_H-elongata_contig20751.5959.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.860e-17
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 MEREDFIDLARVSEQVPGKTPAQVLSFYYRYLAAAEPLTDVVYGPKAAETRRQEEVL 171
            +EREDFIDLA VS+QVPGKTP QVLSF+YRYLAAA+PLTDVVYG +AAE R+ E VL
Sbjct:  707 LEREDFIDLANVSKQVPGKTPTQVLSFFYRYLAAAKPLTDVVYGKEAAEARKLEAVL 763
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BLAST of mRNA_H-elongata_contig20751.5959.1 vs. uniprot
Match: D7G9E3_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E3_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.800e-15
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 MEREDFIDLARVSEQVPGKTPAQVLSFYYRYLAAAEPLTDVVYGPKAAETRRQEEVLLDRETDKPPYSGGHS 216
            M+REDFIDLA VS+QV GK+P QVL F+YRYLA AEPLTDVVYG +AAE R++E +L      +P     +S
Sbjct:  503 MDREDFIDLADVSKQVSGKSPTQVLCFFYRYLATAEPLTDVVYGEEAAEARKREAILPTGSPGRPARESNNS 574
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BLAST of mRNA_H-elongata_contig20751.5959.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.860e-15
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 MEREDFIDLARVSEQVPGKTPAQVLSFYYRYLAAAEPLTDVVYGPKAAETRRQEEVLLDRETDKP 195
            +E+EDFIDLA V +QV GKTPAQVLSFYYRYLA A+PLTDVVYG +AAE R+ E +L    T  P
Sbjct:  704 LEQEDFIDLANVCKQVRGKTPAQVLSFYYRYLAHAKPLTDVVYGKEAAEARKLEAILPPGATKSP 768
[Close]
BLAST of mRNA_H-elongata_contig20751.5959.1 vs. uniprot
Match: D8LCW0_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.070e-14
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 MEREDFIDLARVSEQVPGKTPAQVLSFYYRYLAAAEPLTDVVYGPKAAETRRQEEVLLDRETDKP 195
            +EREDFIDLA V +QV GKT AQVLSFYYRYLA A+PLTDVVYG +AAE R+ E +L    T  P
Sbjct:  549 LEREDFIDLANVCKQVRGKTRAQVLSFYYRYLAHAKPLTDVVYGKEAAEARKLEAILPAGTTKSP 613
[Close]
BLAST of mRNA_H-elongata_contig20751.5959.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.880e-14
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 MEREDFIDLARVSEQVPGKTPAQVLSFYYRYLAAAEPLTDVVYGPKAAETRRQEEVLLDRETDKP 195
            ++RED IDLA V +Q+PGK+P QVL F+YRYLA AEPLTDVVYG +AAE R++E +L    TD P
Sbjct:  705 IDREDLIDLADVIKQIPGKSPTQVLCFFYRYLATAEPLTDVVYGEEAAEARKREAIL---PTDSP 766
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20751.5959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K0T4_9PHAE1.050e-1850.00BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9E4_ECTSI3.450e-1850.00BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLS8_9PHAE3.860e-1778.95ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G9E3_ECTSI1.800e-1559.72ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KVI2_9PHAE1.860e-1567.69ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW0_ECTSI1.070e-1467.69ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JX23_9PHAE4.880e-1463.08BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20751contigH-elongata_contig20751:1207..3166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size947
Cds size945
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20751.5959.1prot_H-elongata_contig20751.5959.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20751 1207..3166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.7111237-CDS-H-elongata_contig20751:1206..12751622930159.7111237-CDS-H-elongata_contig20751:1206..1275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 1207..1275 +
1691679304.0695446-CDS-H-elongata_contig20751:1206..12751691679304.0695446-CDS-H-elongata_contig20751:1206..1275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 1207..1275 +
1622930159.7215078-CDS-H-elongata_contig20751:1496..15651622930159.7215078-CDS-H-elongata_contig20751:1496..1565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 1497..1565 +
1691679304.086378-CDS-H-elongata_contig20751:1496..15651691679304.086378-CDS-H-elongata_contig20751:1496..1565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 1497..1565 +
1622930159.7322192-CDS-H-elongata_contig20751:1780..24731622930159.7322192-CDS-H-elongata_contig20751:1780..2473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 1781..2473 +
1691679304.0952377-CDS-H-elongata_contig20751:1780..24731691679304.0952377-CDS-H-elongata_contig20751:1780..2473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 1781..2473 +
1622930159.7465258-CDS-H-elongata_contig20751:3052..31661622930159.7465258-CDS-H-elongata_contig20751:3052..3166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 3053..3166 +
1691679304.1045773-CDS-H-elongata_contig20751:3052..31661691679304.1045773-CDS-H-elongata_contig20751:3052..3166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 3053..3166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20751.5959.1

>prot_H-elongata_contig20751.5959.1 ID=prot_H-elongata_contig20751.5959.1|Name=mRNA_H-elongata_contig20751.5959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=315bp
MEREDFIDLARVSEQVPGKTPAQVLSFYYRYLAAAEPLTDVVYGPKAAET
RRQEEVLLDRETDKPPYSGGHSIHAGSHPASLRTGDVQTLDGSRGASPAV
DGFCRGSSGTGSGLGEPELTSDCRVVRLSPLKLSQGPIIRASNTEAVKTN
ATHAGQAKAETPLCPFTIRPNSRGASSPNVAFSREYTSSRGVDGIAPAPA
TSDPKDQSVQGVCNNQEDGLRVRKETKPETSVAINEEVDRKADDGSAHHG
LTQQRRELEHNSPCNLKGLPPDAEVFEVQDSDDETRSQAHTETKERTPSP
VPDAKAPLPKAVVEA
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mRNA from alignment at H-elongata_contig20751:1207..3166+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20751.5959.1 ID=mRNA_H-elongata_contig20751.5959.1|Name=mRNA_H-elongata_contig20751.5959.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1960bp|location=Sequence derived from alignment at H-elongata_contig20751:1207..3166+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCGCGAGGATTTTATTGACCTTGCCAGAGTCAGCGAGCAGGTTCC
CGGCAAGACTCCTGCGCAGGTAATTTTGAGTCTTGATTCCTATTAGCGTG
TGTCGCTCAGCTAGCCTTTTGTAGGCATTTTCCTGCGATCGAGATGCTCT
AGAGCTTTGCGTTCTTTCTGGGAGAAGACATGACATGTCATGGGAAAACA
GAGCAAGCTACGTCGCAACAAAATTTGAATTTGAAGGTTTTGTTCCTCCC
GATCCCCTTGCATCGCGTGTGTATGTACGTGCTTTCAAAGGTTCTGAGCT
TCTACTATAGATACCTCGCGGCCGCGGAGCCACTTACCGATGTGGTGTAC
GGACCCAAGGTGCAGTTCGCGCTGTCGGTAGACAATTGTGATGTGTTGGG
CGCAAAGTTCGTCTCTAAGGACTCACGCCTCGTTTGATCGGAGTTAATTT
AGCTGCATTGCACTTGACAGGAAACCATGAGGTGTTCGCATCATCCCACA
CAAAGAAGACAATATACCTAAGACAACACCCGACACTCCGTTTCTCGTTC
GGTACCCCCCTTGGCACAATACAGGCCGCTGAAACACGTCGACAGGAGGA
GGTGCTTCTGGACCGCGAAACCGACAAGCCACCCTACTCGGGCGGTCACT
CCATCCATGCAGGAAGCCATCCCGCCAGCCTCAGAACAGGCGATGTACAA
ACTTTGGATGGATCTCGTGGAGCAAGCCCTGCCGTAGACGGCTTCTGTCG
TGGCAGCAGTGGCACCGGCAGTGGTCTGGGTGAACCGGAGCTCACTTCCG
ATTGCCGAGTCGTCCGGCTTTCGCCTTTGAAACTATCCCAAGGACCTATC
ATAAGAGCAAGCAACACGGAGGCTGTCAAAACGAACGCCACACATGCTGG
ACAGGCGAAAGCTGAGACACCTTTGTGCCCGTTCACGATAAGACCAAACA
GCAGGGGTGCATCTTCCCCGAATGTGGCTTTCTCTCGGGAATATACGTCG
AGCCGCGGTGTAGATGGTATCGCTCCTGCTCCTGCCACCAGCGACCCTAA
GGATCAGTCAGTCCAGGGTGTATGCAACAACCAGGAAGACGGGCTCCGTG
TTCGGAAAGAGACTAAACCAGAAACCAGTGTGGCGATCAATGAAGAGGTC
GATCGCAAGGCTGATGACGGCAGCGCCCATCATGGCTTGACCCAGCAGCG
TAGGGAATTGGAACATAATTCACCATGCAACTTAAAGGGCCTTCCTCCTG
ATGCCGAGGTTTTCGAGGCAAGATTCGCCTCGTTCTCCTTCCTTTGACCT
TTTTCGCTGCAAATCGGTTCATGATTGGTGTCCTGTAGTGAAGAAGTAAA
CCATCGTCGATATATTTCCTAAATTACCGAGGCCCTCGTTTCCGCCAGCT
TTCGTTTGTCATAGCCGCCCACCCGTAAGAATACTGGTCACGCCGTTCGA
GCTTGAGTTGATATACATTTGTGGCAATTCACGCTGTCGATTTCGACAAG
TGCAAACTGATACCTTTGTGCGTCACTACAGTTTGTTGACTTGTGAAATC
GATTGTCTTTTTTCACTGACTGGTGTCTAATTATCAGGTGCAAGACAGCG
ACGATGAAACGCGCAGTGAAGCAGACACTGAACTATTGAGGCCATCGTTT
TCGCCAGCTTTCGTTTGTCATAGCCGCCCACCCGTAAGAATACTGGCCAA
GTCGTTCGAGCTTGAGTTGATCTACAGTTGTGGCGATTCACGCTGCCGAT
TTCGACATGTGGAAATTGATACCTTTGTGCGTCACTACATTTTGTTGCCT
TGTTGACCCCATTGTCTGGTTCCACTGACTGGTCTCCAATTATCAGGTGC
AAGACAGCGACGATGAAACGCGCAGTCAAGCACATACTGAAACCAAGGAA
AGAACCCCATCCCCCGTTCCTGATGCCAAGGCACCCTTGCCGAAGGCAGT
AGTGGAAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig20751:1207..3166+

>mRNA_H-elongata_contig20751.5959.1 ID=mRNA_H-elongata_contig20751.5959.1|Name=mRNA_H-elongata_contig20751.5959.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at H-elongata_contig20751:1207..3166+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCGCGAGGATTTTATTGACCTTGCCAGAGTCAGCGAGCAGGTTCC
CGGCAAGACTCCTGCGCAGATGGAGCGCGAGGATTTTATTGACCTTGCCA
GAGTCAGCGAGCAGGTTCCCGGCAAGACTCCTGCGCAGGTTCTGAGCTTC
TACTATAGATACCTCGCGGCCGCGGAGCCACTTACCGATGTGGTGTACGG
ACCCAAGGTTCTGAGCTTCTACTATAGATACCTCGCGGCCGCGGAGCCAC
TTACCGATGTGGTGTACGGACCCAAGGCCGCTGAAACACGTCGACAGGAG
GAGGTGCTTCTGGACCGCGAAACCGACAAGCCACCCTACTCGGGCGGTCA
CTCCATCCATGCAGGAAGCCATCCCGCCAGCCTCAGAACAGGCGATGTAC
AAACTTTGGATGGATCTCGTGGAGCAAGCCCTGCCGTAGACGGCTTCTGT
CGTGGCAGCAGTGGCACCGGCAGTGGTCTGGGTGAACCGGAGCTCACTTC
CGATTGCCGAGTCGTCCGGCTTTCGCCTTTGAAACTATCCCAAGGACCTA
TCATAAGAGCAAGCAACACGGAGGCTGTCAAAACGAACGCCACACATGCT
GGACAGGCGAAAGCTGAGACACCTTTGTGCCCGTTCACGATAAGACCAAA
CAGCAGGGGTGCATCTTCCCCGAATGTGGCTTTCTCTCGGGAATATACGT
CGAGCCGCGGTGTAGATGGTATCGCTCCTGCTCCTGCCACCAGCGACCCT
AAGGATCAGTCAGTCCAGGGTGTATGCAACAACCAGGAAGACGGGCTCCG
TGTTCGGAAAGAGACTAAACCAGAAACCAGTGTGGCGATCAATGAAGAGG
TCGATCGCAAGGCTGATGACGGCAGCGCCCATCATGGCTTGACCCAGCAG
CGTAGGGAATTGGAACATAATTCACCATGCAACTTAAAGGGCCTTCCTCC
TGATGCCGAGGTTTTCGAGGCCGCTGAAACACGTCGACAGGAGGAGGTGC
TTCTGGACCGCGAAACCGACAAGCCACCCTACTCGGGCGGTCACTCCATC
CATGCAGGAAGCCATCCCGCCAGCCTCAGAACAGGCGATGTACAAACTTT
GGATGGATCTCGTGGAGCAAGCCCTGCCGTAGACGGCTTCTGTCGTGGCA
GCAGTGGCACCGGCAGTGGTCTGGGTGAACCGGAGCTCACTTCCGATTGC
CGAGTCGTCCGGCTTTCGCCTTTGAAACTATCCCAAGGACCTATCATAAG
AGCAAGCAACACGGAGGCTGTCAAAACGAACGCCACACATGCTGGACAGG
CGAAAGCTGAGACACCTTTGTGCCCGTTCACGATAAGACCAAACAGCAGG
GGTGCATCTTCCCCGAATGTGGCTTTCTCTCGGGAATATACGTCGAGCCG
CGGTGTAGATGGTATCGCTCCTGCTCCTGCCACCAGCGACCCTAAGGATC
AGTCAGTCCAGGGTGTATGCAACAACCAGGAAGACGGGCTCCGTGTTCGG
AAAGAGACTAAACCAGAAACCAGTGTGGCGATCAATGAAGAGGTCGATCG
CAAGGCTGATGACGGCAGCGCCCATCATGGCTTGACCCAGCAGCGTAGGG
AATTGGAACATAATTCACCATGCAACTTAAAGGGCCTTCCTCCTGATGCC
GAGGTTTTCGAGGTGCAAGACAGCGACGATGAAACGCGCAGTCAAGCACA
TACTGAAACCAAGGAAAGAACCCCATCCCCCGTTCCTGATGCCAAGGCAC
CCTTGCCGAAGGCAGTAGTGGAAGCAGTGCAAGACAGCGACGATGAAACG
CGCAGTCAAGCACATACTGAAACCAAGGAAAGAACCCCATCCCCCGTTCC
TGATGCCAAGGCACCCTTGCCGAAGGCAGTAGTGGAAGCA
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