mRNA_H-elongata_contig207482.5957.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207482.5957.1
Unique NamemRNA_H-elongata_contig207482.5957.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Match: D8LIL3_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIL3_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.090e-21
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    7 QLDVELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAASIFHAADEERAR 168
            +LDVEL+VAMELFQAADQFGVDRLKRMCES MLASIEVENAASIFHAADE  A+
Sbjct:  408 ELDVELEVAMELFQAADQFGVDRLKRMCESTMLASIEVENAASIFHAADERNAK 461          
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Match: A0A7S3JNQ4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JNQ4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-15
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   16 VELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAASIFHAADEERAR 168
            ++LD+AM+LFQAAD+FGVDRLK++CES MLASI VENA SIFHAAD   A+
Sbjct:  455 IDLDIAMDLFQAADRFGVDRLKKICESKMLASINVENACSIFHAADRYMAK 505          
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Match: A0A7S2C711_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C711_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.360e-15
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    7 QLDVELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAASIFHAADEERAR 168
            Q++V LD+AMELFQ AD FGV+RLK++CE  MLASI V+NAASIFHAAD   A+
Sbjct:  126 QVNVPLDIAMELFQTADHFGVERLKKICEYKMLASINVDNAASIFHAADLHNAK 179          
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Match: A0A2P4X727_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X727_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.650e-14
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1
Query:   10 LDVELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAASIFHAAD 153
            LDV +D AMELF  AD++GV+RLKR+CES ML S+ VENAASIFHAAD
Sbjct:   31 LDVAVDFAMELFVTADRYGVERLKRICESKMLGSLCVENAASIFHAAD 78          
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Match: A0A3F2S3I9_9STRA (BTB domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3I9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.180e-13
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 1
Query:   10 LDVELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAASIFHAAD 153
            LDV +DVAMELF  AD++GV+RLKR+CES ML+S+ ++NAASIFHAAD
Sbjct:  286 LDVAVDVAMELFVTADRYGVERLKRICESKMLSSLCIDNAASIFHAAD 333          
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Match: F0Y4D1_AURAN (BTB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4D1_AURAN)

HSP 1 Score: 71.6 bits (174), Expect = 3.390e-13
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1
Query:   10 LDVELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAAS 135
            +D+ LD+AMELFQAADQFGV+RLKRMCES MLASI VENAA+
Sbjct:  386 VDIALDIAMELFQAADQFGVERLKRMCESKMLASIHVENAAT 427          
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Match: A0A7S2BYV7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYV7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.420e-13
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1
Query:    7 QLDVELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAASI 138
            Q ++ LD+AMELFQAADQFGV+RLK++CES MLASI VENAA+I
Sbjct:  153 QCEIPLDIAMELFQAADQFGVERLKKICESKMLASINVENAATI 196          
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Match: A0A7S2SJA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJA3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.390e-13
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 1
Query:    7 QLDVELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAASIFHAAD 153
            Q+D+ ++ AMELFQAAD+FGV+RLKRMCE+ ML+SI ++NAASI  AAD
Sbjct:  447 QIDIRVEEAMELFQAADRFGVERLKRMCENAMLSSINIDNAASILLAAD 495          
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Match: A0A7S1XUX3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUX3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.850e-13
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   10 LDVELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAASIFHAADEERARG 171
            +DV LD  M+L QAAD+FGVDRLK++CE +ML+SI VENAASIF  AD   A G
Sbjct:  163 VDVSLDELMDLLQAADRFGVDRLKKICEHIMLSSINVENAASIFVVADTHSASG 216          
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Match: K3WUC3_GLOUD (BTB domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WUC3_GLOUD)

HSP 1 Score: 69.3 bits (168), Expect = 2.220e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   10 LDVELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAASIFHAAD 153
            LDV +DVAMELF AAD++GVDRLK +CES ML S+ +EN A+I HAAD
Sbjct:  395 LDVSVDVAMELFVAADRYGVDRLKHICESRMLGSLCIENVATILHAAD 442          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207482.5957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIL3_ECTSI1.090e-2188.89BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3JNQ4_9STRA1.250e-1572.55Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2C711_9STRA1.360e-1568.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2P4X727_9STRA1.650e-1472.92Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A3F2S3I9_9STRA2.180e-1370.83BTB domain-containing protein n=1 Tax=Phytophthora... [more]
F0Y4D1_AURAN3.390e-1380.95BTB domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2BYV7_9STRA4.420e-1375.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SJA3_9STRA6.390e-1367.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1XUX3_9STRA6.850e-1364.81Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K3WUC3_GLOUD2.220e-1268.75BTB domain-containing protein n=2 Tax=Pythiaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207482contigH-elongata_contig207482:592..762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue8.5e-18
Seed eggNOG ortholog2880.D8LIL3
Preferred namelztr1
KEGG koko:K12115,ko:K12116,ko:K12117
KEGG Pathwayko04712,map04712
GOsGO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007600,GO:0008150,GO:0015030,GO:0016604,GO:0019233,GO:0031974,GO:0031981,GO:0032501,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050877,GO:0065007,GO:0070013
EggNOG free text desc.Galactose oxidase, central domain
EggNOG OGs2CMFB@1,2QQ74@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.6740792-CDS-H-elongata_contig207482:591..7621622930159.6740792-CDS-H-elongata_contig207482:591..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207482 592..762 -
1691679304.046314-CDS-H-elongata_contig207482:591..7621691679304.046314-CDS-H-elongata_contig207482:591..762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207482 592..762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207482.5957.1prot_H-elongata_contig207482.5957.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207482 592..762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207482.5957.1

>prot_H-elongata_contig207482.5957.1 ID=prot_H-elongata_contig207482.5957.1|Name=mRNA_H-elongata_contig207482.5957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MTQLDVELDVAMELFQAADQFGVDRLKRMCESMMLASIEVENAASIFHAA
DEERARG
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mRNA from alignment at H-elongata_contig207482:592..762-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207482.5957.1 ID=mRNA_H-elongata_contig207482.5957.1|Name=mRNA_H-elongata_contig207482.5957.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig207482:592..762- (Himanthalia elongata Himel1 dioecious)
ATGACCCAGTTGGATGTGGAATTGGACGTGGCGATGGAGCTCTTCCAGGC AGCGGATCAGTTCGGAGTAGACCGGCTGAAGCGGATGTGCGAAAGCATGA TGCTGGCGAGCATAGAGGTGGAAAACGCGGCGAGCATATTTCACGCTGCC GACGAGGAGAGAGCAAGGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig207482:592..762-

>mRNA_H-elongata_contig207482.5957.1 ID=mRNA_H-elongata_contig207482.5957.1|Name=mRNA_H-elongata_contig207482.5957.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig207482:592..762- (Himanthalia elongata Himel1 dioecious)
ATGACCCAGTTGGATGTGGAATTGGACGTGGCGATGGAGCTCTTCCAGGC
AGCGGATCAGTTCGGAGTAGACCGGCTGAAGCGGATGTGCGAAAGCATGA
TGCTGGCGAGCATAGAGGTGGAAAACGCGGCGAGCATATTTCACGCTGCC
GACGAGGAGAGAGCAAGGGGGATGACCCAGTTGGATGTGGAATTGGACGT
GGCGATGGAGCTCTTCCAGGCAGCGGATCAGTTCGGAGTAGACCGGCTGA
AGCGGATGTGCGAAAGCATGATGCTGGCGAGCATAGAGGTGGAAAACGCG
GCGAGCATATTTCACGCTGCCGACGAGGAGAGAGCAAGGGGG
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