mRNA_H-elongata_contig20740.5956.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20740.5956.1
Unique NamemRNA_H-elongata_contig20740.5956.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20740.5956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20740contigH-elongata_contig20740:1573..3499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size615
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20740.5956.1prot_H-elongata_contig20740.5956.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20740 3103..3438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.591683-UTR-H-elongata_contig20740:1572..16511622930159.591683-UTR-H-elongata_contig20740:1572..1651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20740 1573..1651 +
1691679303.9813285-UTR-H-elongata_contig20740:1572..16511691679303.9813285-UTR-H-elongata_contig20740:1572..1651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20740 1573..1651 +
1622930159.607069-UTR-H-elongata_contig20740:2963..31021622930159.607069-UTR-H-elongata_contig20740:2963..3102Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20740 2964..3102 +
1691679303.9915192-UTR-H-elongata_contig20740:2963..31021691679303.9915192-UTR-H-elongata_contig20740:2963..3102Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20740 2964..3102 +
1622930159.6357665-UTR-H-elongata_contig20740:3438..34991622930159.6357665-UTR-H-elongata_contig20740:3438..3499Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20740 3439..3499 +
1691679304.0349972-UTR-H-elongata_contig20740:3438..34991691679304.0349972-UTR-H-elongata_contig20740:3438..3499Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20740 3439..3499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.6225936-CDS-H-elongata_contig20740:3102..34381622930159.6225936-CDS-H-elongata_contig20740:3102..3438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20740 3103..3438 +
1691679304.0179088-CDS-H-elongata_contig20740:3102..34381691679304.0179088-CDS-H-elongata_contig20740:3102..3438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20740 3103..3438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20740.5956.1

>prot_H-elongata_contig20740.5956.1 ID=prot_H-elongata_contig20740.5956.1|Name=mRNA_H-elongata_contig20740.5956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MIPVNLPPPPAEYRGRSAGSRAFKATNRLSALRQYTTSHVVMYVNVGRSE
LRRADLTCRADRGLQTTRSKSMRHYTVTSAKSFIVAIPRAAGIVTSDAKS
AWIRPSRDFEV*
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mRNA from alignment at H-elongata_contig20740:1573..3499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20740.5956.1 ID=mRNA_H-elongata_contig20740.5956.1|Name=mRNA_H-elongata_contig20740.5956.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1927bp|location=Sequence derived from alignment at H-elongata_contig20740:1573..3499+ (Himanthalia elongata Himel1 dioecious)
GGGGGGAGTTCGATGAAAGAGAAGAGTGGAACAAGAAAATCAAGGAGCAG
GAGAAGCAGCGCAAGAGCGGGAATCAATAGTTGAGTCTTATTGTGTCCAC
CCGTCTTCCACGATTGAGGGGACCCCATCCCGAAGTGCAGCCCCACTCGG
TATAGTCCCCAGCAGCAGATGGTGGTGGTGTACGTCTAGCTCTACAGTAT
GTTGATGAGGGTGAAGGTACATCTGAGCCTTGAGAGCGCTCGTCTCTGTA
ACGCGGGAGGCACTTATTCTATTCTCGCCTCCTAGGCGCGATTGTTTTAG
ACAAACCCGGGTGGTATATGTCTTCTCTCTGTGAGAGTCGGTCATCGTTC
GATACCGCCGCGGTGGGTGGAGTTCCCGTCTGGTTCAACGGACGGTTTCC
ATTGAAATGCGTTTTTTTTTCATGTGTAATACTTGATACGGTATAGTCCT
TGTTGTTGATGGGGGGGGGGGCAGGGGGGGGGAGGGAGGGAGGGCACGCG
GCAACATGATCGGAACGATCGCTTGTTGCTTCTGTTCGCTTTATCGTTCA
TGTCTTGAGCGCTACTGGGTATGCAGCTTAAGGCTAACGCCTATCGGCGG
CTTTATGCACTTACGAGTATTACAGGCTACCTGTAATCTCGAAGTGCCGC
ACCAGCGAGACGGGGGAGGGAGGTAAACGACCCTTTAACAAACGTCTTCA
GATACAAAGATTATGTGTGACCACCTTGTACGGAGTGTTGTGTTATGCTT
GCGTGTGCTCACCTCCAGGCGATTGATAGCAGTAACAATCCCGCTACTAT
AGGGATTTAGTCGTTACTAATATATGTCAGTCGTAGCCTAGCGTTGTCCG
AGCAGTGTGAGGTGTGAGGTGAAATAAAAACTCACAACACTAGTCAGGTG
CCCTCGCCGTGCCGGTCAGACCCGTCGGGGGTCCTTTGGTGTCCGCTGTG
CCAAACATCCAACGCCCCAAAGCCATTTACAGACTAAAATCGGTGCGCTA
TTATAGGCGAGCGGGGTGATAATTAGTTTCCCCTTTCGGCCTCACTTTAT
ATTTTCCCCTGGATTTGATTGGAGAAAATACGATATACAATACGATACGA
TACGTGAGGTGCTTCCAAAAAATGTAACAAACTTGCCCTCACTCGATTCA
GCAATCATTAGTGGATGGTGGGACCTCTGCTGTGTCGTCAGTCGTAACGC
TGCTTTGTTGAACATAAATGAGGCCTTCTGCCGCTCTACACTGCTCTACA
CTGCTCTCACATACGCTTAGCCAATTCCATTGAACCCGTAATCGGGCGTC
GGAACACTTGCTGTGCTGTGCTGTGGTGTGTCAAAGAGCATCATCGCGAC
ATATTGCCCCTTCACATGCCTCTCCCACACTTTCCACTCAGGGCGCGCGC
CCGATGATGGAAGGCCTGACTTGAGAGAAGCGTTATGAAGCGGTAACGAT
CGTGGCGGTGCCAGCGTTTGCTTTGGAATGGTACTTCCGCCACGAGCCCG
GGCTCCTCCGCCATACCGTCATATTTCCACATGATCCCCGTGAACCTTCC
GCCCCCGCCTGCTGAATACCGCGGTCGCAGCGCGGGGAGTCGGGCATTCA
AAGCGACCAATCGCCTATCCGCGCTTCGGCAATATACGACATCCCACGTG
GTCATGTACGTCAATGTAGGGCGCAGTGAGTTGAGGCGCGCAGATCTCAC
TTGCCGTGCTGATCGCGGATTACAGACAACGCGGTCGAAGTCGATGAGAC
ACTATACTGTCACCTCAGCTAAAAGCTTTATCGTTGCCATACCTCGTGCC
GCCGGCATCGTGACGTCCGACGCAAAATCGGCGTGGATTCGCCCCAGCCG
CGATTTTGAGGTATGACGATATAGACTTGCGGCTCCAATACGCGGTTTCG
AGGGGTGCGCAATGTATAAATACAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig20740:1573..3499+

>mRNA_H-elongata_contig20740.5956.1 ID=mRNA_H-elongata_contig20740.5956.1|Name=mRNA_H-elongata_contig20740.5956.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig20740:1573..3499+ (Himanthalia elongata Himel1 dioecious)
ATGATCCCCGTGAACCTTCCGCCCCCGCCTGCTGAATACCGCGGTCGCAG
CGCGGGGAGTCGGGCATTCAAAGCGACCAATCGCCTATCCGCGCTTCGGC
AATATACGACATCCCACGTGGTCATGTACGTCAATGTAGGGCGCAGTGAG
TTGAGGCGCGCAGATCTCACTTGCCGTGCTGATCGCGGATTACAGACAAC
GCGGTCGAAGTCGATGAGACACTATACTGTCACCTCAGCTAAAAGCTTTA
TCGTTGCCATACCTCGTGCCGCCGGCATCGTGACGTCCGACGCAAAATCG
GCGTGGATTCGCCCCAGCCGCGATTTTGAGGTATGAATGATCCCCGTGAA
CCTTCCGCCCCCGCCTGCTGAATACCGCGGTCGCAGCGCGGGGAGTCGGG
CATTCAAAGCGACCAATCGCCTATCCGCGCTTCGGCAATATACGACATCC
CACGTGGTCATGTACGTCAATGTAGGGCGCAGTGAGTTGAGGCGCGCAGA
TCTCACTTGCCGTGCTGATCGCGGATTACAGACAACGCGGTCGAAGTCGA
TGAGACACTATACTGTCACCTCAGCTAAAAGCTTTATCGTTGCCATACCT
CGTGCCGCCGGCATCGTGACGTCCGACGCAAAATCGGCGTGGATTCGCCC
CAGCCGCGATTTTGAGGTATGA
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