mRNA_H-elongata_contig207395.5955.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig207395.5955.1
Unique Name	mRNA_H-elongata_contig207395.5955.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Match: A0A6H5L1X3_9PHAE (2-Hacid_dh_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.840e-10
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 1

Query:    1 QMKDGVILINCARGGIINEDALLRALNSGKAS 96
            QMKDGVI++NCARGGIINEDALL+ALNSGK +
Sbjct:   56 QMKDGVIIVNCARGGIINEDALLKALNSGKVA 87

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BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Match: D7FJJ0_ECTSI (D-3-phosphoglycerate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ0_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.020e-9
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 1

Query:    1 QMKDGVILINCARGGIINEDALLRALNSGKAS 96
            QMKDGVI++NCARGGIINEDALL+ALNSGK +
Sbjct:  300 QMKDGVIIVNCARGGIINEDALLKALNSGKVA 331

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BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Match: A0A3G8XPB9_9FLAO (3-phosphoglycerate dehydrogenase n=1 Tax=Kaistella carnis TaxID=1241979 RepID=A0A3G8XPB9_9FLAO)

HSP 1 Score: 56.6 bits (135), Expect = 3.000e-8
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 1

Query:    1 QMKDGVILINCARGGIINEDALLRALNSGKASF 99
            +MKDGV++INC+RGG++ EDALL ALNSGK +F
Sbjct:  233 KMKDGVVIINCSRGGVVEEDALLEALNSGKVAF 265

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BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Match: UPI001C85D8D6 (phosphoglycerate dehydrogenase n=1 Tax=Desulfuromonas versatilis TaxID=2802975 RepID=UPI001C85D8D6)

HSP 1 Score: 56.2 bits (134), Expect = 4.340e-8
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1

Query:    1 QMKDGVILINCARGGIINEDALLRALNSGKAS 96
            +MKDGVILINCARGGIINE+A+L AL SGKA+
Sbjct:  219 RMKDGVILINCARGGIINEEAMLAALESGKAA 250

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BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Match: A0A0F7DBE6_9EURY (D-3-phosphoglycerate dehydrogenase n=1 Tax=Geoglobus ahangari TaxID=113653 RepID=A0A0F7DBE6_9EURY)

HSP 1 Score: 56.2 bits (134), Expect = 4.340e-8
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1

Query:    1 QMKDGVILINCARGGIINEDALLRALNSGK 90
            +MKDGVI+INCARGGIINEDAL+RA+ SGK
Sbjct:  218 RMKDGVIVINCARGGIINEDALIRAIKSGK 247

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BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Match: A0A2N6DZW8_9DELT (D-3-phosphoglycerate dehydrogenase (Fragment) n=1 Tax=Desulfuromonas sp. TaxID=892 RepID=A0A2N6DZW8_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-7
Identity = 23/30 (76.67%), Postives = 29/30 (96.67%), Query Frame = 1

Query:    1 QMKDGVILINCARGGIINEDALLRALNSGK 90
            +MKDGV+++NCARGGIINE+A+L ALNSGK
Sbjct:  219 KMKDGVLIVNCARGGIINEEAMLNALNSGK 248

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BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Match: A0A8H5VYN9_9HYPO (Pathway-specific regulatory n=1 Tax=Fusarium tjaetaba TaxID=1567544 RepID=A0A8H5VYN9_9HYPO)

HSP 1 Score: 54.7 bits (130), Expect = 1.510e-7
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 1

Query:    4 MKDGVILINCARGGIINEDALLRALNSGK 90
            M+DG IL+NCARGGI+NEDALL ALNSGK
Sbjct:  229 MRDGAILLNCARGGIVNEDALLTALNSGK 257

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BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Match: A0A8J8GA69_9FLAO (D-3-phosphoglycerate dehydrogenase n=1 Tax=Frigoriflavimonas asaccharolytica TaxID=2735899 RepID=A0A8J8GA69_9FLAO)

HSP 1 Score: 54.3 bits (129), Expect = 2.010e-7
Identity = 22/32 (68.75%), Postives = 29/32 (90.62%), Query Frame = 1

Query:    4 MKDGVILINCARGGIINEDALLRALNSGKASF 99
            MKDGV ++NC+RGG+I+EDAL+ ALNSGK +F
Sbjct:  234 MKDGVAIVNCSRGGVIDEDALINALNSGKVAF 265

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BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Match: A0A3N9VJH4_9DELT (D-3-phosphoglycerate dehydrogenase n=2 Tax=Bacteria TaxID=2 RepID=A0A3N9VJH4_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 2.080e-7
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1

Query:    1 QMKDGVILINCARGGIINEDALLRALNSGK 90
            QMKDGVILIN ARGGIIN++ALL ALNSGK
Sbjct:  219 QMKDGVILINTARGGIINDEALLNALNSGK 248

[Close]

BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Match: A0A7Y1YVE9_9BACT (3-phosphoglycerate dehydrogenase n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y1YVE9_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 2.240e-7
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1

Query:    1 QMKDGVILINCARGGIINEDALLRALNSGK 90
            +MKDGVIL+N ARGGII EDALL ALNSGK
Sbjct:   67 KMKDGVILVNTARGGIIGEDALLEALNSGK 96

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot

BLAST of mRNA_H-elongata_contig207395.5955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L1X3_9PHAE	8.840e-10	84.38	2-Hacid_dh_C domain-containing protein n=1 Tax=Ect...	[more]
D7FJJ0_ECTSI	1.020e-9	84.38	D-3-phosphoglycerate dehydrogenase n=1 Tax=Ectocar...	[more]
A0A3G8XPB9_9FLAO	3.000e-8	69.70	3-phosphoglycerate dehydrogenase n=1 Tax=Kaistella...	[more]
UPI001C85D8D6	4.340e-8	81.25	phosphoglycerate dehydrogenase n=1 Tax=Desulfuromo...	[more]
A0A0F7DBE6_9EURY	4.340e-8	83.33	D-3-phosphoglycerate dehydrogenase n=1 Tax=Geoglob...	[more]
A0A2N6DZW8_9DELT	1.110e-7	76.67	D-3-phosphoglycerate dehydrogenase (Fragment) n=1 ...	[more]
A0A8H5VYN9_9HYPO	1.510e-7	82.76	Pathway-specific regulatory n=1 Tax=Fusarium tjaet...	[more]
A0A8J8GA69_9FLAO	2.010e-7	68.75	D-3-phosphoglycerate dehydrogenase n=1 Tax=Frigori...	[more]
A0A3N9VJH4_9DELT	2.080e-7	86.67	D-3-phosphoglycerate dehydrogenase n=2 Tax=Bacteri...	[more]
A0A7Y1YVE9_9BACT	2.240e-7	83.33	3-phosphoglycerate dehydrogenase n=1 Tax=Saprospir...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig207395	contig	H-elongata_contig207395:803..922 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	120
Cds size	117
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930159.5294101-UTR-H-elongata_contig207395:802..805	1622930159.5294101-UTR-H-elongata_contig207395:802..805	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig207395 803..805 +
1691679303.9612362-UTR-H-elongata_contig207395:802..805	1691679303.9612362-UTR-H-elongata_contig207395:802..805	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig207395 803..805 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930159.5458872-CDS-H-elongata_contig207395:805..922	1622930159.5458872-CDS-H-elongata_contig207395:805..922	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig207395 806..922 +
1691679303.9714398-CDS-H-elongata_contig207395:805..922	1691679303.9714398-CDS-H-elongata_contig207395:805..922	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig207395 806..922 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig207395.5955.1	prot_H-elongata_contig207395.5955.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig207395 806..922 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig207395:803..922+
coding sequence from alignment at H-elongata_contig207395:803..922+

protein sequence of mRNA_H-elongata_contig207395.5955.1

>prot_H-elongata_contig207395.5955.1 ID=prot_H-elongata_contig207395.5955.1|Name=mRNA_H-elongata_contig207395.5955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MKDGVILINCARGGIINEDALLRALNSGKASFLPPKEF*

mRNA from alignment at H-elongata_contig207395:803..922+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig207395.5955.1 ID=mRNA_H-elongata_contig207395.5955.1|Name=mRNA_H-elongata_contig207395.5955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig207395:803..922+ (Himanthalia elongata Himel1 dioecious)
CAGATGAAGGACGGCGTGATCCTGATCAACTGTGCGCGTGGCGGCATCAT
CAATGAGGACGCTCTCCTGAGGGCGCTCAACTCCGGCAAGGCGAGTTTTC
TACCCCCAAAAGAGTTTTAA

Coding sequence (CDS) from alignment at H-elongata_contig207395:803..922+

>mRNA_H-elongata_contig207395.5955.1 ID=mRNA_H-elongata_contig207395.5955.1|Name=mRNA_H-elongata_contig207395.5955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig207395:803..922+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGACGGCGTGATCCTGATCAACTGTGCGCGTGGCGGCATCATCAA
TGAGGACGCTCTCCTGAGGGCGCTCAACTCCGGCAAGGCGAGTTTTCTAC
CCCCAAAAGAGTTTTAAATGAAGGACGGCGTGATCCTGATCAACTGTGCG
CGTGGCGGCATCATCAATGAGGACGCTCTCCTGAGGGCGCTCAACTCCGG
CAAGGCGAGTTTTCTACCCCCAAAAGAGTTTTAA