mRNA_H-elongata_contig207344.5952.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207344.5952.1
Unique NamemRNA_H-elongata_contig207344.5952.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207344.5952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207344contigH-elongata_contig207344:201..931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size701
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207344.5952.1prot_H-elongata_contig207344.5952.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207344 201..497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.1329725-CDS-H-elongata_contig207344:200..4971622930159.1329725-CDS-H-elongata_contig207344:200..497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207344 201..497 -
1691679303.7570047-CDS-H-elongata_contig207344:200..4971691679303.7570047-CDS-H-elongata_contig207344:200..497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207344 201..497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.154749-UTR-H-elongata_contig207344:497..5951622930159.154749-UTR-H-elongata_contig207344:497..595Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207344 498..595 -
1691679303.766281-UTR-H-elongata_contig207344:497..5951691679303.766281-UTR-H-elongata_contig207344:497..595Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207344 498..595 -
1622930159.1667762-UTR-H-elongata_contig207344:626..9311622930159.1667762-UTR-H-elongata_contig207344:626..931Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207344 627..931 -
1691679303.7766047-UTR-H-elongata_contig207344:626..9311691679303.7766047-UTR-H-elongata_contig207344:626..931Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207344 627..931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207344.5952.1

>prot_H-elongata_contig207344.5952.1 ID=prot_H-elongata_contig207344.5952.1|Name=mRNA_H-elongata_contig207344.5952.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MSRMERIRRERSLLVSPPDNTEDDAGEDHSRSTAAAHEFEEYMQATPAVN
SHDFDVLKYWKNHAIEGVDDKTAEVITPAPWPHLGLLARLLLGIDVTSC
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mRNA from alignment at H-elongata_contig207344:201..931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207344.5952.1 ID=mRNA_H-elongata_contig207344.5952.1|Name=mRNA_H-elongata_contig207344.5952.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=731bp|location=Sequence derived from alignment at H-elongata_contig207344:201..931- (Himanthalia elongata Himel1 dioecious)
TCCCGAGCCTGGTTTGGTTGTGATGGACGCGTTCGTGAGCCCAGAGCCAA
TGATTGGTGCAAGCGAAACGTCATGAGCAGAAGCGGGAAAAGTTCCATCA
CCACAAGCGGTGCAAGCACCGCCATCACCCAGGAGATGGGCCAGAGATCT
CTGGGCATGGCAATGCTTGACATCGAAGCAATCGCTGCTGCCACGGTGTT
TGCCTGAATGGGGGCAATGACCTGCGAACGAAGGCGCGTACAGCAGTGGA
GAGCCTTTGCAAACAGTTGGGGAATGTCGAAGTGGTCGAGACAGCCAATA
GTGGCGCCGGGCAAGAAGGACAGTCGGGGGACGGAGGAACTGAAGGCAAC
GATGCGACTGGTGGTGGAGTGGATGCGGGCGGCAATAATGCTAGTGGAGG
GGAAGAGGGTGGGGGAGCCCCACCAGCTCCCCCGATGAGCAGGATGGAGA
GAATCCGACGGGAGCGCAGCCTGCTGGTCTCGCCGCCTGATAATACGGAA
GATGATGCCGGGGAAGACCATTCGCGGAGTACGGCGGCAGCACATGAATT
CGAAGAGTACATGCAAGCAACTCCCGCAGTCAACTCGCACGACTTCGACG
TACTAAAGTATTGGAAGAACCATGCGATTGAAGGCGTTGATGACAAGACA
GCAGAGGTCATCACTCCTGCTCCCTGGCCGCATCTTGGACTGTTGGCCAG
ACTGCTCCTGGGCATCGATGTTACCAGCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig207344:201..931-

>mRNA_H-elongata_contig207344.5952.1 ID=mRNA_H-elongata_contig207344.5952.1|Name=mRNA_H-elongata_contig207344.5952.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig207344:201..931- (Himanthalia elongata Himel1 dioecious)
ATGAGCAGGATGGAGAGAATCCGACGGGAGCGCAGCCTGCTGGTCTCGCC
GCCTGATAATACGGAAGATGATGCCGGGGAAGACCATTCGCGGAGTACGG
CGGCAGCACATGAATTCGAAGAGTACATGCAAGCAACTCCCGCAGTCAAC
TCGCACGACTTCGACGTACTAAAGTATTGGAAGAACCATGCGATTGAAGG
CGTTGATGACAAGACAGCAGAGGTCATCACTCCTGCTCCCTGGCCGCATC
TTGGACTGTTGGCCAGACTGCTCCTGGGCATCGATGTTACCAGCTGCATG
AGCAGGATGGAGAGAATCCGACGGGAGCGCAGCCTGCTGGTCTCGCCGCC
TGATAATACGGAAGATGATGCCGGGGAAGACCATTCGCGGAGTACGGCGG
CAGCACATGAATTCGAAGAGTACATGCAAGCAACTCCCGCAGTCAACTCG
CACGACTTCGACGTACTAAAGTATTGGAAGAACCATGCGATTGAAGGCGT
TGATGACAAGACAGCAGAGGTCATCACTCCTGCTCCCTGGCCGCATCTTG
GACTGTTGGCCAGACTGCTCCTGGGCATCGATGTTACCAGCTGC
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