mRNA_H-elongata_contig207329.5951.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207329.5951.1
Unique NamemRNA_H-elongata_contig207329.5951.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207329.5951.1 vs. uniprot
Match: D7FJF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF7_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.660e-9
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 FVLFQVKGDFFYSLLDTDDGVFHNRDLLINLLKASPGGD 117
            ++ F+V+GD F SLLDT DGVFHNR++L+ LLKASP G+
Sbjct:  136 YLTFKVRGDRFNSLLDTADGVFHNREMLMRLLKASPNGE 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207329.5951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJF7_ECTSI7.660e-964.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207329contigH-elongata_contig207329:745..861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.0884597-CDS-H-elongata_contig207329:744..8611622930159.0884597-CDS-H-elongata_contig207329:744..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207329 745..861 +
1691679303.749634-CDS-H-elongata_contig207329:744..8611691679303.749634-CDS-H-elongata_contig207329:744..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207329 745..861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207329.5951.1prot_H-elongata_contig207329.5951.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207329 745..861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207329.5951.1

>prot_H-elongata_contig207329.5951.1 ID=prot_H-elongata_contig207329.5951.1|Name=mRNA_H-elongata_contig207329.5951.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
FVLFQVKGDFFYSLLDTDDGVFHNRDLLINLLKASPGGD
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mRNA from alignment at H-elongata_contig207329:745..861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207329.5951.1 ID=mRNA_H-elongata_contig207329.5951.1|Name=mRNA_H-elongata_contig207329.5951.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig207329:745..861+ (Himanthalia elongata Himel1 dioecious)
TTCGTACTTTTCCAGGTAAAGGGAGACTTCTTCTACTCCCTCCTGGACAC
CGACGACGGGGTGTTCCACAACAGAGATCTGCTGATTAACCTCCTCAAGG
CTTCACCGGGAGGCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig207329:745..861+

>mRNA_H-elongata_contig207329.5951.1 ID=mRNA_H-elongata_contig207329.5951.1|Name=mRNA_H-elongata_contig207329.5951.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig207329:745..861+ (Himanthalia elongata Himel1 dioecious)
TTCGTACTTTTCCAGGTAAAGGGAGACTTCTTCTACTCCCTCCTGGACAC
CGACGACGGGGTGTTCCACAACAGAGATCTGCTGATTAACCTCCTCAAGG
CTTCACCGGGAGGCGATTTCGTACTTTTCCAGGTAAAGGGAGACTTCTTC
TACTCCCTCCTGGACACCGACGACGGGGTGTTCCACAACAGAGATCTGCT
GATTAACCTCCTCAAGGCTTCACCGGGAGGCGAT
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