mRNA_H-elongata_contig20732.5950.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: D8LGS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS5_ECTSI) HSP 1 Score: 191 bits (485), Expect = 1.040e-50 Identity = 156/468 (33.33%), Postives = 193/468 (41.24%), Query Frame = 2
Query: 2 SGKSVVATGAEDSTARLWDLRAPA-----------------SSRVALCLCRCFDGEAVASVAFRPGGANSLYCSAGGK------------VLEFDLRAKA-SGLLLVTSPTATIDAGAEEVNEVAVHPKGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDFVDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPRLLVSTGNDRRLLFWDHRPFEEAAESRDGSSCINKRVGVG-----------------TSAPRRGRNSSPLSGRTEKTHGGKQPTSRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDGAEAEDGCCGEGEWRRGEGGVRYSTALSTMFLEDKPNRVASLVAPYEALVLADTSSEVKIIGRRGT 1264
+ +++VATGAEDST RLWDLR A S RVA+CLCRCF GEAV+SV F GA+ LYCSAGGK VLEFDLR S LL+TSPT D G +LFNPPFV+SVDF+ DG FLAAGLG+S VVV+DAKTR PVGRCDGH+AP+SQVHYP FDP+LLVS GND+ LL WD R FE +E G+ +G G S ++GR+ + + G ++ + R G A +G +G VR S L ++ LE+KPN V S PY A+ +ADTSS KI+ G+
Sbjct: 33 AAEALVATGAEDSTVRLWDLRDGATARTPGGSGTTSSGTTSSPRVAMCLCRCFGGEAVSSVVFGADGAHHLYCSAGGKTWKLADIPSWLQVLEFDLRLSGGSRALLMTSPTEVFDDG-------------------------------------------------------------------------------------------------------ELFNPPFVHSVDFTADGCFLAAGLGDSGVVVVDAKTRAPVGRCDGHSAPVSQVHYPSFDPKLLVSAGNDQNLLLWDQRQFEHHSEESKGN------IGDGGXXXXXXXXXXXXXXXRPSGKKKGRSKGVNKHQPAEVDGAQRRDNGREGLSGGNIREEVGPEADVGNVSSEA----------GETATEGLR--------DGIVRCSVPLLSVRLEEKPNWVTSFTVPYAAIAVADTSSVAKILRAHGS 373
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A2D4C4M9_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4M9_PYTIN) HSP 1 Score: 189 bits (480), Expect = 3.850e-50 Identity = 118/300 (39.33%), Postives = 173/300 (57.67%), Query Frame = 2
Query: 14 VVATGAEDSTARLWDLRAPASSRVALCL----CRCFDGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHPK-GEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDFVDEV----AGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFD-PRLLVSTGNDRRLLFWDHR----PFEEAAESRDGSS-CINKRVGV 868
V+ +G++D T RLWD+R S+R CL V S+AF G +++LY + G KVL FDLR GL+L + EE+N ++V PK YLAA DD+G ++VY++ ++L KTLR H ++C + FRP A WD+ SG +D L+ WDFS G+++ +D V A SS + + ++ +LFNPP V+SV F+ +G+ AAGLG+++V V+D + V R H A +SQVH+P F L+S GND +L WD P E A + DG+ C+ KR G+
Sbjct: 38 VLVSGSDDGTCRLWDVR---STRAVKCLNVKKALAQSDAGVNSMAF--GDSDTLYVATGNKVLTFDLRR--DGLVLDSLTQPPFQDSDEEINTLSVQPKKARYLAAPDDNGDIRVYDLEAKRLFKTLRGQHTNLCMTAPFRPNAPWDLVSGGMDGLLLFWDFSRGRLKFCIDLNAGVNALDASSSSSAAAPATENQLFNPPLVHSVAFASNGKTFAAGLGDATVAVVDFAAKRIVRRLRTHQATVSQVHFPAFRRDEWLLSCGNDAQLCVWDXASAIIPEEGDAAASDGTDPCLVKRXGL 330
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: K3X1F6_GLOUD (ANAPC4_WD40 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1F6_GLOUD) HSP 1 Score: 187 bits (475), Expect = 2.090e-49 Identity = 103/280 (36.79%), Postives = 172/280 (61.43%), Query Frame = 2
Query: 14 VVATGAEDSTARLWDLRAPASSR-------VALCLCRCFDGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP--KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDF------VDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPR-LLVSTGNDRRLLFWDHR 805
V+A+G++D + RLWD+R ++R + L D AV S+AF G + ++ +AG KVL FDLR + GL+ + + +E+N ++ HP +G+YL+A DD+G +++Y++ +L+KTLR H +IC + FRP A WD+ SG +D L+ WDFS G+++ K+D ++ V G S S + + ++FNPP V+S+ F+ +G+ AAGLG++S+ ++D ++ V R H+A +SQVH+P F P L+S+GND ++ WD++
Sbjct: 28 VLASGSDDGSCRLWDVRTTRATRSMNIKKALGLTPEDDQDESAVNSMAFSANG-DCIHVAAGNKVLTFDLRQE--GLIFNCASKEILQDNDDEINALSRHPGKQGKYLSAPDDNGDIRIYDMEVHRLYKTLRGQHVNICSAAPFRPNAPWDLVSGGMDGFLLFWDFSRGRMKFKIDLNTGVNSLESVEGNS--SSATAGVNQMFNPPLVHSIAFAPNGKSFAAGLGDASIAIVDFSSKQMVRRLKQHSAAVSQVHFPVFKPNEWLLSSGNDAKICVWDYQ 302
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: V9ESC4_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9ESC4_PHYPR) HSP 1 Score: 184 bits (467), Expect = 2.810e-48 Identity = 116/298 (38.93%), Postives = 174/298 (58.39%), Query Frame = 2
Query: 11 SVVATGAEDSTARLWDLRAPASSRVALCL-------CRCFDGEAVASVAF--RPGGANS--LYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP--KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDF---VDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPR-LLVSTGNDRRLLFWDHRPFEEAAESRDGSSCIN 853
+V+A+G +D T RLWD+R ++RV C D AV S+AF GA S +Y +AG KVL FD+R A L++ + +E+N ++ HP G++L+A DD+G + VY++ + L KTLR H +IC + FRP A WD+ SG +D L+ WDFS G+V+ +D V+ + +S +S S +Q+LFNPP V+S+ F+ +G+ AAGLG+SS+ V++ ++ V R H A +SQV +P F P LVST ND ++ WD+ +AA S D S +N
Sbjct: 29 NVLASGGDDGTCRLWDVR---TARVTKCFNVKKALGTDNMDESAVNSLAFGKTSEGAESAYIYVAAGNKVLTFDMRQPA--LIVNCADREVFQHNEDEINVLSRHPGKHGKFLSAPDDTGDICVYDLESHCLFKTLRGQHTNICSTAPFRPNAPWDLISGGMDGMLLFWDFSRGRVKFSIDLNTGVNGLGNSASVEESGSGTQQLFNPPLVHSLAFASNGKSFAAGLGDSSIAVVNFGSKQIVRRLKHHGAMVSQVLFPAFSPDDRLVSTANDAKVCMWDY----QAALSLDASDALN 317
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A5D6XJU8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJU8_9STRA) HSP 1 Score: 182 bits (463), Expect = 1.270e-47 Identity = 116/282 (41.13%), Postives = 166/282 (58.87%), Query Frame = 2
Query: 14 VVATGAEDSTARLWDLRA-----PASSRVALCL-----CRCFDGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHPK--GEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDF---VDEVAGPSSPSDSMSSSQ---KLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPR-LLVSTGNDRRLLFWDH 802
V+A+G++D TARLWD+R + R AL L D AV ++AF G + L+ +AG KVL FDLR A L+ + + A A+EVN +A H G +LAA DD+G V+VY++ +L KTL H +IC + FRP A WD+ SG LD ++ WDFS G+++ KLD V+E+ GP S + S +LFNPP V+++ F+ +GR AAGLG++SV V+D + V R + H A +SQVH+P F L+S GND ++ WD+
Sbjct: 28 VLASGSDDGTARLWDVRTVRAVRSMNIRKALGLEGDPDAADADDGAVNALAFDATG-DLLHAAAGNKVLTFDLRQDA--LVFAHASRELLQANADEVNALARHGGRGGRFLAAPDDAGDVRVYDMDAHRLFKTLSGHHRNICSAAVFRPHAPWDLVSGGLDGFVLFWDFSRGRMKCKLDLSGGVNELGGPGDAEASTAESNATSRLFNPPLVHALAFAPNGRSFAAGLGDASVAVVDFHAKRVVRRLERHRAAVSQVHFPAFRADDWLLSCGNDAKVCVWDY 306
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: M4C1J5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1J5_HYAAE) HSP 1 Score: 167 bits (422), Expect = 4.620e-42 Identity = 103/283 (36.40%), Postives = 162/283 (57.24%), Query Frame = 2
Query: 11 SVVATGAEDSTARLWDLRAPASSRVALCL-------CRCFDGEAVASVAF--RPGGANS--LYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP--KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDFVD-EVAGPSSPSDSMSS---SQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCF-DPRLLVSTGNDRRLLFWDHR 805
+V+A+G++D T R+WD+R ++RV CL D AV S+AF GA S +Y +AG KVL FD+R S L++ +E+N ++ HP G YL+ DD+G ++VY++ + L KTLR H +IC + FRP +WD+ SG +D L+ WDF G+V+ ++D E +G + ++ +Q++FNPP V+S+ + +G+ A GLG++SV V+D ++ V R H A +SQVH+P F L+S ND ++ WD+R
Sbjct: 29 NVLASGSDDGTCRIWDIR---TTRVTKCLNVKKALGTDKEDEIAVNSLAFGKSTAGAESAYIYVAAGRKVLTFDMRQ--SALIVDCVDREVFPESEDEINVLSRHPGKHGRYLSVPDDTGSIRVYDLESHCLFKTLRGQHTNICSAALFRPNGAWDLVSGGMDGLLLFWDFFRGRVKFRIDLNSLEGSGTCASANDEGEGCGTQQMFNPPLVHSIVCAPNGKSCAVGLGDASVAVVDFGSKQIVRRLKHHKAMVSQVHFPAFCSQNRLISAANDAKVCLWDYR 306
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A1V9ZH01_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZH01_9STRA) HSP 1 Score: 166 bits (419), Expect = 6.350e-42 Identity = 101/279 (36.20%), Postives = 163/279 (58.42%), Query Frame = 2
Query: 14 VVATGAEDSTARLWDLRAPASSRVALCLCRCFDGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP---KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPR-ASWDVASGALDSTLVMWDFS----TGKVRRKLDFVDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHY-PCFDPRLLVSTGNDRRLLFWDHRPFEEAA 823
++A+G+EDST RLWDLR + +VA C+ + F GEAV S+AF ++ +Y ++ ++ FDLRA G +++T T + A+E+N +A+HP K +LA DD G + V N+ +R L TLR H +I + FRP+ A +D+ +G LD +V W+ + TG++R KL+ V+ D++ + +++NPPFV+ + F+ GR +AA LG+ SV ++D +R+ R H A +S V + P LLVS ND ++ WD + + A
Sbjct: 32 LMASGSEDSTCRLWDLR---THKVATCISKAFAGEAVNSIAFP--SSHEIYVASHNQLYMFDLRA---GSMILTEATTIFEPAADEINSLALHPMPAKKPWLAVPDDEGEIGVVNLQSRALMTTLRGQHTNIAMTAAFRPKCAGYDLVTGGLDCHMVFWEMNGDRGTGRMRFKLNMQMLVS-----EDALGDATQVWNPPFVHDLKFNTTGRTVAAALGDGSVALVDFASRSLTRRLRTHTAAVSCVEFVPFHGTELLVSAANDAKVAVWDLKAADARA 297
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A485LFY5_9STRA (Aste57867_20786 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFY5_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.030e-41 Identity = 105/270 (38.89%), Postives = 153/270 (56.67%), Query Frame = 2
Query: 14 VVATGAEDSTARLWDLRAPASSRVALCLCRCFDGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP---KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPR-ASWDVASGALDSTLVMW----DFSTGKVRRKLDFVDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHY-PCFDPRLLVSTGNDRRLLFW 796
++ +G+ DST R+WDLR S RV C+ F GE V SVAF LY ++ +V +FDLR AS L+ VT + + A+E+N + VHP K +LA DD G + + N+ T +H TLR H +IC S FRPR A +D+ SG LD LV W D S G++R K++ AG + + +++NPPFVY + FS +GR LAA LG+ S+ ++D +R+ V + GH A +S V + D +++ GND +L W
Sbjct: 30 ILVSGSNDSTCRIWDLR---SRRVTQCIAHAFAGEPVNSVAFGVSS-TELYVASVNQVYQFDLRQSASALI-VTEASTIFEPAADEINCLHVHPTATKKPWLAVPDDEGEIGLLNMKTHAVH-TLRGQHTNICTSAVFRPRCAGYDLVSGGLDCQLVFWEVKSDGSGGRMRFKMNMQSLEAG-------LGDATQMWNPPFVYKLAFSANGRSLAAALGDGSIALVDFASRSLVRKLRGHHAIVSDVQFFTHHDTEYVIAAGNDAKLSIW 286
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A6P8HQA6_ACTTE (WD repeat-containing protein 53-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HQA6_ACTTE) HSP 1 Score: 162 bits (411), Expect = 7.400e-41 Identity = 88/252 (34.92%), Postives = 136/252 (53.97%), Query Frame = 2
Query: 110 DGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHPKGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDFVDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPV---GRCDGHAAPISQVHYPCFDP--RLLVSTGNDRRLLFWDHRPFEEAAESRDGSSCI 850
D V SV F N L+ S+G KV +DLR+ + SP + +E+N++ +H G+YLAA DD+G VKV + KL KTL H +IC +V+FRP+ WD+ +G +D +V WDFS+G+V + D + S NPPFV+S+ D R LAAGLG+ S+ + + R + + GH +SQVH+P F P +L+S GND +L+ W+ + + ++ ++C+
Sbjct: 53 DSSEVTSVCFCRRNENRLFVSSGNKVFHYDLRS-------LDSPVSEFHFNEDEINQLVIHDGGQYLAACDDTGAVKVIDTRQNKLFKTLSRGHGNICSTVQFRPQRPWDLVTGGMDYKVVYWDFSSGRVLQDEDM----------QQGVESGAYFVNPPFVHSLHVKEDSRNLAAGLGDGSIQLFHFEGRKKLIVDQKIKGHTQGVSQVHFPKFKPSENILISGGNDEKLILWNFK-LNDGQKTNGNNACV 286
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A0P1AX75_PLAHL (WD40/YVTN repeat-like-containing domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX75_PLAHL) HSP 1 Score: 162 bits (410), Expect = 1.290e-40 Identity = 95/273 (34.80%), Postives = 160/273 (58.61%), Query Frame = 2
Query: 11 SVVATGAEDSTARLWDLRAPASSRVALCLCRCFDGEAVASVAFRPGGANS--LYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP--KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDFVDEVAGPSSPSDSM---SSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPR-LLVSTGNDRRLLFWDHR 805
+V+A+G++D T RLWDLR ++RV+ +CF + A G+ S +Y +AG KVL FD+R A L++ + +E+N ++ HP G++L+A DD+G + VY++ + +L K L H +IC + FRP A WD+ SG +D L+ WDFS G+++ +D + G + + +Q++ NPP V+S+ F+ +G+ AGLG++S+ V++ ++ V R + H+A +SQVH+P F LVS ND ++ WD++
Sbjct: 27 NVLASGSDDGTCRLWDLR---TTRVS----KCFHIKR----ALGTQGSESAYIYVAAGNKVLTFDVRQPA--LIVEHTDRPIFQQNEDEINTLSRHPGKNGKFLSAPDDAGNICVYDIESHQLFKKLNGQHTNICSAAPFRPNAPWDLVSGGMDGLLLFWDFSRGRLKFSIDLNTGLNGLGDSALTKIRNGGTQQMVNPPLVHSLVFAPNGKSFVAGLGDASIAVVNFNSKQIVRRLEHHSAMVSQVHFPAFRAEDRLVSVANDAKVCIWDYQ 286 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20732.5950.1 >prot_H-elongata_contig20732.5950.1 ID=prot_H-elongata_contig20732.5950.1|Name=mRNA_H-elongata_contig20732.5950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp MWDFSTGKVRRKLDFVDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGback to top mRNA from alignment at H-elongata_contig20732:18..5279- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20732.5950.1 ID=mRNA_H-elongata_contig20732.5950.1|Name=mRNA_H-elongata_contig20732.5950.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5262bp|location=Sequence derived from alignment at H-elongata_contig20732:18..5279- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20732:18..5279- >mRNA_H-elongata_contig20732.5950.1 ID=mRNA_H-elongata_contig20732.5950.1|Name=mRNA_H-elongata_contig20732.5950.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig20732:18..5279- (Himanthalia elongata Himel1 dioecious)back to top |