mRNA_H-elongata_contig20732.5950.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20732.5950.1
Unique NamemRNA_H-elongata_contig20732.5950.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: D8LGS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS5_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.040e-50
Identity = 156/468 (33.33%), Postives = 193/468 (41.24%), Query Frame = 2
Query:    2 SGKSVVATGAEDSTARLWDLRAPA-----------------SSRVALCLCRCFDGEAVASVAFRPGGANSLYCSAGGK------------VLEFDLRAKA-SGLLLVTSPTATIDAGAEEVNEVAVHPKGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDFVDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPRLLVSTGNDRRLLFWDHRPFEEAAESRDGSSCINKRVGVG-----------------TSAPRRGRNSSPLSGRTEKTHGGKQPTSRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDGAEAEDGCCGEGEWRRGEGGVRYSTALSTMFLEDKPNRVASLVAPYEALVLADTSSEVKIIGRRGT 1264
            + +++VATGAEDST RLWDLR  A                 S RVA+CLCRCF GEAV+SV F   GA+ LYCSAGGK            VLEFDLR    S  LL+TSPT   D G                                                                                                       +LFNPPFV+SVDF+ DG FLAAGLG+S VVV+DAKTR PVGRCDGH+AP+SQVHYP FDP+LLVS GND+ LL WD R FE  +E   G+      +G G                  S  ++GR+      +  +  G ++  + R                                   G  A +G          +G VR S  L ++ LE+KPN V S   PY A+ +ADTSS  KI+   G+
Sbjct:   33 AAEALVATGAEDSTVRLWDLRDGATARTPGGSGTTSSGTTSSPRVAMCLCRCFGGEAVSSVVFGADGAHHLYCSAGGKTWKLADIPSWLQVLEFDLRLSGGSRALLMTSPTEVFDDG-------------------------------------------------------------------------------------------------------ELFNPPFVHSVDFTADGCFLAAGLGDSGVVVVDAKTRAPVGRCDGHSAPVSQVHYPSFDPKLLVSAGNDQNLLLWDQRQFEHHSEESKGN------IGDGGXXXXXXXXXXXXXXXRPSGKKKGRSKGVNKHQPAEVDGAQRRDNGREGLSGGNIREEVGPEADVGNVSSEA----------GETATEGLR--------DGIVRCSVPLLSVRLEEKPNWVTSFTVPYAAIAVADTSSVAKILRAHGS 373          
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A2D4C4M9_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4M9_PYTIN)

HSP 1 Score: 189 bits (480), Expect = 3.850e-50
Identity = 118/300 (39.33%), Postives = 173/300 (57.67%), Query Frame = 2
Query:   14 VVATGAEDSTARLWDLRAPASSRVALCL----CRCFDGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHPK-GEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDFVDEV----AGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFD-PRLLVSTGNDRRLLFWDHR----PFEEAAESRDGSS-CINKRVGV 868
            V+ +G++D T RLWD+R   S+R   CL            V S+AF  G +++LY + G KVL FDLR    GL+L +          EE+N ++V PK   YLAA DD+G ++VY++  ++L KTLR  H ++C +  FRP A WD+ SG +D  L+ WDFS G+++  +D    V    A  SS + + ++  +LFNPP V+SV F+ +G+  AAGLG+++V V+D   +  V R   H A +SQVH+P F     L+S GND +L  WD      P E  A + DG+  C+ KR G+
Sbjct:   38 VLVSGSDDGTCRLWDVR---STRAVKCLNVKKALAQSDAGVNSMAF--GDSDTLYVATGNKVLTFDLRR--DGLVLDSLTQPPFQDSDEEINTLSVQPKKARYLAAPDDNGDIRVYDLEAKRLFKTLRGQHTNLCMTAPFRPNAPWDLVSGGMDGLLLFWDFSRGRLKFCIDLNAGVNALDASSSSSAAAPATENQLFNPPLVHSVAFASNGKTFAAGLGDATVAVVDFAAKRIVRRLRTHQATVSQVHFPAFRRDEWLLSCGNDAQLCVWDXASAIIPEEGDAAASDGTDPCLVKRXGL 330          
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: K3X1F6_GLOUD (ANAPC4_WD40 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1F6_GLOUD)

HSP 1 Score: 187 bits (475), Expect = 2.090e-49
Identity = 103/280 (36.79%), Postives = 172/280 (61.43%), Query Frame = 2
Query:   14 VVATGAEDSTARLWDLRAPASSR-------VALCLCRCFDGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP--KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDF------VDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPR-LLVSTGNDRRLLFWDHR 805
            V+A+G++D + RLWD+R   ++R       + L      D  AV S+AF   G + ++ +AG KVL FDLR +  GL+   +    +    +E+N ++ HP  +G+YL+A DD+G +++Y++   +L+KTLR  H +IC +  FRP A WD+ SG +D  L+ WDFS G+++ K+D       ++ V G S  S + +   ++FNPP V+S+ F+ +G+  AAGLG++S+ ++D  ++  V R   H+A +SQVH+P F P   L+S+GND ++  WD++
Sbjct:   28 VLASGSDDGSCRLWDVRTTRATRSMNIKKALGLTPEDDQDESAVNSMAFSANG-DCIHVAAGNKVLTFDLRQE--GLIFNCASKEILQDNDDEINALSRHPGKQGKYLSAPDDNGDIRIYDMEVHRLYKTLRGQHVNICSAAPFRPNAPWDLVSGGMDGFLLFWDFSRGRMKFKIDLNTGVNSLESVEGNS--SSATAGVNQMFNPPLVHSIAFAPNGKSFAAGLGDASIAIVDFSSKQMVRRLKQHSAAVSQVHFPVFKPNEWLLSSGNDAKICVWDYQ 302          
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: V9ESC4_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9ESC4_PHYPR)

HSP 1 Score: 184 bits (467), Expect = 2.810e-48
Identity = 116/298 (38.93%), Postives = 174/298 (58.39%), Query Frame = 2
Query:   11 SVVATGAEDSTARLWDLRAPASSRVALCL-------CRCFDGEAVASVAF--RPGGANS--LYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP--KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDF---VDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPR-LLVSTGNDRRLLFWDHRPFEEAAESRDGSSCIN 853
            +V+A+G +D T RLWD+R   ++RV  C            D  AV S+AF     GA S  +Y +AG KVL FD+R  A  L++  +         +E+N ++ HP   G++L+A DD+G + VY++ +  L KTLR  H +IC +  FRP A WD+ SG +D  L+ WDFS G+V+  +D    V+ +   +S  +S S +Q+LFNPP V+S+ F+ +G+  AAGLG+SS+ V++  ++  V R   H A +SQV +P F P   LVST ND ++  WD+    +AA S D S  +N
Sbjct:   29 NVLASGGDDGTCRLWDVR---TARVTKCFNVKKALGTDNMDESAVNSLAFGKTSEGAESAYIYVAAGNKVLTFDMRQPA--LIVNCADREVFQHNEDEINVLSRHPGKHGKFLSAPDDTGDICVYDLESHCLFKTLRGQHTNICSTAPFRPNAPWDLISGGMDGMLLFWDFSRGRVKFSIDLNTGVNGLGNSASVEESGSGTQQLFNPPLVHSLAFASNGKSFAAGLGDSSIAVVNFGSKQIVRRLKHHGAMVSQVLFPAFSPDDRLVSTANDAKVCMWDY----QAALSLDASDALN 317          
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A5D6XJU8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJU8_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.270e-47
Identity = 116/282 (41.13%), Postives = 166/282 (58.87%), Query Frame = 2
Query:   14 VVATGAEDSTARLWDLRA-----PASSRVALCL-----CRCFDGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHPK--GEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDF---VDEVAGPSSPSDSMSSSQ---KLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPR-LLVSTGNDRRLLFWDH 802
            V+A+G++D TARLWD+R        + R AL L         D  AV ++AF   G + L+ +AG KVL FDLR  A  L+   +    + A A+EVN +A H    G +LAA DD+G V+VY++   +L KTL   H +IC +  FRP A WD+ SG LD  ++ WDFS G+++ KLD    V+E+ GP     S + S    +LFNPP V+++ F+ +GR  AAGLG++SV V+D   +  V R + H A +SQVH+P F     L+S GND ++  WD+
Sbjct:   28 VLASGSDDGTARLWDVRTVRAVRSMNIRKALGLEGDPDAADADDGAVNALAFDATG-DLLHAAAGNKVLTFDLRQDA--LVFAHASRELLQANADEVNALARHGGRGGRFLAAPDDAGDVRVYDMDAHRLFKTLSGHHRNICSAAVFRPHAPWDLVSGGLDGFVLFWDFSRGRMKCKLDLSGGVNELGGPGDAEASTAESNATSRLFNPPLVHALAFAPNGRSFAAGLGDASVAVVDFHAKRVVRRLERHRAAVSQVHFPAFRADDWLLSCGNDAKVCVWDY 306          
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: M4C1J5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1J5_HYAAE)

HSP 1 Score: 167 bits (422), Expect = 4.620e-42
Identity = 103/283 (36.40%), Postives = 162/283 (57.24%), Query Frame = 2
Query:   11 SVVATGAEDSTARLWDLRAPASSRVALCL-------CRCFDGEAVASVAF--RPGGANS--LYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP--KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDFVD-EVAGPSSPSDSMSS---SQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCF-DPRLLVSTGNDRRLLFWDHR 805
            +V+A+G++D T R+WD+R   ++RV  CL           D  AV S+AF     GA S  +Y +AG KVL FD+R   S L++            +E+N ++ HP   G YL+  DD+G ++VY++ +  L KTLR  H +IC +  FRP  +WD+ SG +D  L+ WDF  G+V+ ++D    E +G  + ++       +Q++FNPP V+S+  + +G+  A GLG++SV V+D  ++  V R   H A +SQVH+P F     L+S  ND ++  WD+R
Sbjct:   29 NVLASGSDDGTCRIWDIR---TTRVTKCLNVKKALGTDKEDEIAVNSLAFGKSTAGAESAYIYVAAGRKVLTFDMRQ--SALIVDCVDREVFPESEDEINVLSRHPGKHGRYLSVPDDTGSIRVYDLESHCLFKTLRGQHTNICSAALFRPNGAWDLVSGGMDGLLLFWDFFRGRVKFRIDLNSLEGSGTCASANDEGEGCGTQQMFNPPLVHSIVCAPNGKSCAVGLGDASVAVVDFGSKQIVRRLKHHKAMVSQVHFPAFCSQNRLISAANDAKVCLWDYR 306          
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A1V9ZH01_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZH01_9STRA)

HSP 1 Score: 166 bits (419), Expect = 6.350e-42
Identity = 101/279 (36.20%), Postives = 163/279 (58.42%), Query Frame = 2
Query:   14 VVATGAEDSTARLWDLRAPASSRVALCLCRCFDGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP---KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPR-ASWDVASGALDSTLVMWDFS----TGKVRRKLDFVDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHY-PCFDPRLLVSTGNDRRLLFWDHRPFEEAA 823
            ++A+G+EDST RLWDLR   + +VA C+ + F GEAV S+AF    ++ +Y ++  ++  FDLRA   G +++T  T   +  A+E+N +A+HP   K  +LA  DD G + V N+ +R L  TLR  H +I  +  FRP+ A +D+ +G LD  +V W+ +    TG++R KL+    V+      D++  + +++NPPFV+ + F+  GR +AA LG+ SV ++D  +R+   R   H A +S V + P     LLVS  ND ++  WD +  +  A
Sbjct:   32 LMASGSEDSTCRLWDLR---THKVATCISKAFAGEAVNSIAFP--SSHEIYVASHNQLYMFDLRA---GSMILTEATTIFEPAADEINSLALHPMPAKKPWLAVPDDEGEIGVVNLQSRALMTTLRGQHTNIAMTAAFRPKCAGYDLVTGGLDCHMVFWEMNGDRGTGRMRFKLNMQMLVS-----EDALGDATQVWNPPFVHDLKFNTTGRTVAAALGDGSVALVDFASRSLTRRLRTHTAAVSCVEFVPFHGTELLVSAANDAKVAVWDLKAADARA 297          
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A485LFY5_9STRA (Aste57867_20786 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFY5_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.030e-41
Identity = 105/270 (38.89%), Postives = 153/270 (56.67%), Query Frame = 2
Query:   14 VVATGAEDSTARLWDLRAPASSRVALCLCRCFDGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP---KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPR-ASWDVASGALDSTLVMW----DFSTGKVRRKLDFVDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHY-PCFDPRLLVSTGNDRRLLFW 796
            ++ +G+ DST R+WDLR   S RV  C+   F GE V SVAF       LY ++  +V +FDLR  AS L+ VT  +   +  A+E+N + VHP   K  +LA  DD G + + N+ T  +H TLR  H +IC S  FRPR A +D+ SG LD  LV W    D S G++R K++     AG       +  + +++NPPFVY + FS +GR LAA LG+ S+ ++D  +R+ V +  GH A +S V +    D   +++ GND +L  W
Sbjct:   30 ILVSGSNDSTCRIWDLR---SRRVTQCIAHAFAGEPVNSVAFGVSS-TELYVASVNQVYQFDLRQSASALI-VTEASTIFEPAADEINCLHVHPTATKKPWLAVPDDEGEIGLLNMKTHAVH-TLRGQHTNICTSAVFRPRCAGYDLVSGGLDCQLVFWEVKSDGSGGRMRFKMNMQSLEAG-------LGDATQMWNPPFVYKLAFSANGRSLAAALGDGSIALVDFASRSLVRKLRGHHAIVSDVQFFTHHDTEYVIAAGNDAKLSIW 286          
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A6P8HQA6_ACTTE (WD repeat-containing protein 53-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HQA6_ACTTE)

HSP 1 Score: 162 bits (411), Expect = 7.400e-41
Identity = 88/252 (34.92%), Postives = 136/252 (53.97%), Query Frame = 2
Query:  110 DGEAVASVAFRPGGANSLYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHPKGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDFVDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPV---GRCDGHAAPISQVHYPCFDP--RLLVSTGNDRRLLFWDHRPFEEAAESRDGSSCI 850
            D   V SV F     N L+ S+G KV  +DLR+       + SP +      +E+N++ +H  G+YLAA DD+G VKV +    KL KTL   H +IC +V+FRP+  WD+ +G +D  +V WDFS+G+V +  D              + S     NPPFV+S+    D R LAAGLG+ S+ +   + R  +    +  GH   +SQVH+P F P   +L+S GND +L+ W+ +   +  ++   ++C+
Sbjct:   53 DSSEVTSVCFCRRNENRLFVSSGNKVFHYDLRS-------LDSPVSEFHFNEDEINQLVIHDGGQYLAACDDTGAVKVIDTRQNKLFKTLSRGHGNICSTVQFRPQRPWDLVTGGMDYKVVYWDFSSGRVLQDEDM----------QQGVESGAYFVNPPFVHSLHVKEDSRNLAAGLGDGSIQLFHFEGRKKLIVDQKIKGHTQGVSQVHFPKFKPSENILISGGNDEKLILWNFK-LNDGQKTNGNNACV 286          
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Match: A0A0P1AX75_PLAHL (WD40/YVTN repeat-like-containing domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX75_PLAHL)

HSP 1 Score: 162 bits (410), Expect = 1.290e-40
Identity = 95/273 (34.80%), Postives = 160/273 (58.61%), Query Frame = 2
Query:   11 SVVATGAEDSTARLWDLRAPASSRVALCLCRCFDGEAVASVAFRPGGANS--LYCSAGGKVLEFDLRAKASGLLLVTSPTATIDAGAEEVNEVAVHP--KGEYLAAADDSGVVKVYNVGTRKLHKTLRNAHASICHSVRFRPRASWDVASGALDSTLVMWDFSTGKVRRKLDFVDEVAGPSSPSDSM---SSSQKLFNPPFVYSVDFSLDGRFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPR-LLVSTGNDRRLLFWDHR 805
            +V+A+G++D T RLWDLR   ++RV+    +CF  +     A    G+ S  +Y +AG KVL FD+R  A  L++  +         +E+N ++ HP   G++L+A DD+G + VY++ + +L K L   H +IC +  FRP A WD+ SG +D  L+ WDFS G+++  +D    + G    + +      +Q++ NPP V+S+ F+ +G+   AGLG++S+ V++  ++  V R + H+A +SQVH+P F     LVS  ND ++  WD++
Sbjct:   27 NVLASGSDDGTCRLWDLR---TTRVS----KCFHIKR----ALGTQGSESAYIYVAAGNKVLTFDVRQPA--LIVEHTDRPIFQQNEDEINTLSRHPGKNGKFLSAPDDAGNICVYDIESHQLFKKLNGQHTNICSAAPFRPNAPWDLVSGGMDGLLLFWDFSRGRLKFSIDLNTGLNGLGDSALTKIRNGGTQQMVNPPLVHSLVFAPNGKSFVAGLGDASIAVVNFNSKQIVRRLEHHSAMVSQVHFPAFRAEDRLVSVANDAKVCIWDYQ 286          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20732.5950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGS5_ECTSI1.040e-5033.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4C4M9_PYTIN3.850e-5039.33Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
K3X1F6_GLOUD2.090e-4936.79ANAPC4_WD40 domain-containing protein n=1 Tax=Glob... [more]
V9ESC4_PHYPR2.810e-4838.93Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A5D6XJU8_9STRA1.270e-4741.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
M4C1J5_HYAAE4.620e-4236.40Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A1V9ZH01_9STRA6.350e-4236.20Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485LFY5_9STRA1.030e-4138.89Aste57867_20786 protein n=1 Tax=Aphanomyces stella... [more]
A0A6P8HQA6_ACTTE7.400e-4134.92WD repeat-containing protein 53-like n=1 Tax=Actin... [more]
A0A0P1AX75_PLAHL1.290e-4034.80WD40/YVTN repeat-like-containing domain n=1 Tax=Pl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20732contigH-elongata_contig20732:18..5279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.407
Preferred nameWDR53
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs2CCIF@1,2QQ86@2759,3QBDB@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-07_005190.1
Exons8
Model size2228
Cds size795
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20732.5950.1prot_H-elongata_contig20732.5950.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20732 1264..3988 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930158.8656645-UTR-H-elongata_contig20732:17..3821622930158.8656645-UTR-H-elongata_contig20732:17..382Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 18..382 -
1691679303.6413867-UTR-H-elongata_contig20732:17..3821691679303.6413867-UTR-H-elongata_contig20732:17..382Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 18..382 -
1622930158.8822157-UTR-H-elongata_contig20732:667..12631622930158.8822157-UTR-H-elongata_contig20732:667..1263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 668..1263 -
1691679303.6541219-UTR-H-elongata_contig20732:667..12631691679303.6541219-UTR-H-elongata_contig20732:667..1263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 668..1263 -
1622930158.972027-UTR-H-elongata_contig20732:3988..40661622930158.972027-UTR-H-elongata_contig20732:3988..4066Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 3989..4066 -
1691679303.7144501-UTR-H-elongata_contig20732:3988..40661691679303.7144501-UTR-H-elongata_contig20732:3988..4066Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 3989..4066 -
1622930158.989907-UTR-H-elongata_contig20732:4357..44861622930158.989907-UTR-H-elongata_contig20732:4357..4486Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 4358..4486 -
1691679303.724251-UTR-H-elongata_contig20732:4357..44861691679303.724251-UTR-H-elongata_contig20732:4357..4486Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 4358..4486 -
1622930159.0071383-UTR-H-elongata_contig20732:4733..48141622930159.0071383-UTR-H-elongata_contig20732:4733..4814Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 4734..4814 -
1691679303.7321308-UTR-H-elongata_contig20732:4733..48141691679303.7321308-UTR-H-elongata_contig20732:4733..4814Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 4734..4814 -
1622930159.0421364-UTR-H-elongata_contig20732:5095..52791622930159.0421364-UTR-H-elongata_contig20732:5095..5279Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 5096..5279 -
1691679303.7393289-UTR-H-elongata_contig20732:5095..52791691679303.7393289-UTR-H-elongata_contig20732:5095..5279Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20732 5096..5279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930158.89993-CDS-H-elongata_contig20732:1263..18031622930158.89993-CDS-H-elongata_contig20732:1263..1803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20732 1264..1803 -
1691679303.663752-CDS-H-elongata_contig20732:1263..18031691679303.663752-CDS-H-elongata_contig20732:1263..1803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20732 1264..1803 -
1622930158.9191515-CDS-H-elongata_contig20732:3066..32191622930158.9191515-CDS-H-elongata_contig20732:3066..3219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20732 3067..3219 -
1691679303.6737509-CDS-H-elongata_contig20732:3066..32191691679303.6737509-CDS-H-elongata_contig20732:3066..3219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20732 3067..3219 -
1622930158.9344869-CDS-H-elongata_contig20732:3471..35681622930158.9344869-CDS-H-elongata_contig20732:3471..3568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20732 3472..3568 -
1691679303.6841996-CDS-H-elongata_contig20732:3471..35681691679303.6841996-CDS-H-elongata_contig20732:3471..3568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20732 3472..3568 -
1622930158.9532578-CDS-H-elongata_contig20732:3983..39881622930158.9532578-CDS-H-elongata_contig20732:3983..3988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20732 3984..3988 -
1691679303.6939566-CDS-H-elongata_contig20732:3983..39881691679303.6939566-CDS-H-elongata_contig20732:3983..3988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20732 3984..3988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20732.5950.1

>prot_H-elongata_contig20732.5950.1 ID=prot_H-elongata_contig20732.5950.1|Name=mRNA_H-elongata_contig20732.5950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
MWDFSTGKVRRKLDFVDEVAGPSSPSDSMSSSQKLFNPPFVYSVDFSLDG
RFLAAGLGNSSVVVLDAKTRNPVGRCDGHAAPISQVHYPCFDPRLLVSTG
NDRRLLFWDHRPFEEAAESRDGSSCINKRVGVGTSAPRRGRNSSPLSGRT
EKTHGGKQPTSRRNGGRNKKGKKHLSRAVTEEVRAHRSATEEERAGGDGA
EAEDGCCGEGEWRRGEGGVRYSTALSTMFLEDKPNRVASLVAPYEALVLA
DTSSEVKIIGRRGT*
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mRNA from alignment at H-elongata_contig20732:18..5279-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20732.5950.1 ID=mRNA_H-elongata_contig20732.5950.1|Name=mRNA_H-elongata_contig20732.5950.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5262bp|location=Sequence derived from alignment at H-elongata_contig20732:18..5279- (Himanthalia elongata Himel1 dioecious)
GTCTGGAAAATCTGTGGTAGCAACTGGGGCGGAGGACAGCACGGCGCGCT TGTGGGACCTCAGGGCCCCCGCCTCGTCCCGGGTTGCCCTGTGCCTATGC CGCTGCTTCGACGGAGAGGCCGTTGCCAGCGTTGCCTTCCGCCCCGGTGG CGCAAACAGTCTCTACTGCTCCGCTGGCGGCAAGGTATCTTCCCTCTTGA CGCGCTGTCATGGTCCCAATCCACCATTTCATAGTAGCCCCGTTGCTGCT GTGCCTCCTTGCTTTACGCGTGGCTGCCAGACGAGAGATCCTCCAGCTAC AGAACCACCGTATGTATAAGCACGCGTGTTTTCAACGGCAATGTATATCA TCCTATGTGACCACGTGCGCCTTGCCGTCGCAGAGCGCGTGGTTACCGAA CCTCTTCCACCCTTCGTTACCCGCGTGCACCCTTATCACGAGCCCTTGCT GCTCCGATGCTCCAGGTGCTGGAATTCGACCTCCGCGCGAAGGCGAGCGG ACTTCTCCTGGTCACGAGCCCTACCGCCACAATCGACGCCGGCGCGGTAT GTCGACTGAACATGATTCTAGCGATATCAATGCCCAATGATAAATGTATC CTGAATATCGCCTCTCGTTGGCGAGGACTGGTGAAGTCGGTGATGCGGCA TGATGTCTACCGTTTGACGTTCATCGTACGTTTCCAGCGAAGGGTTTACT GAGCTACGAAGCTCTCGCGTGCGTGCAGATCTTTGGTGGTATAACATTCT CTGTCTCCCGATTTTGGTGTGCGAACCGCGCGCCCCCCCGTAGGAGGAGG TGAACGAGGTTGCCGTACACCCGAAAGGGGAATACTTGGCCGCAGCGGAC GATTCGGGAGTCGTGAAGGTCTACAACGTCGGCACGAGGAAGTTGCATAA GACGCTGCGAAACGCCCACGCGGTGTGTGCGACGCTTCCGCGGTGGCCGG CATCCTTGCTTGGCTTCGGTTGGACGAAAGACCAGAGGCCAAATGTCACA AAACGTAGTACGTCGATCGATGGCCACATCGTATACCCCCATCCTTCGCG TCAAGCAGCCGGTATCTGCTTGCAAATGTTATTCATTTATGGTTGCACTC TTCAAATCCGACTTCTGTGAAAACGTCTCTTTTTCTCTGTGCCCCTCTTT CTCACGCACACTCACACACGATCACAGCGTCGTTTTCCGTTCGATCGATC CGTGTCGCCGCAGAGTATTTGCCATTCCGTGCGTTTCCGTCCTCGAGCGA GCTGGGATGTCGCCTCGGGAGCGCTGGACAGCACGCTGGTTATGTGGTAC GCAATCCTCGACCCTAGGGCATGAGATGGAGCTGGAGGTCGAAACATGTG CTTCATTGGGCAGCGTCCTAACCGAATCAATCTTCTCCGACCGTGCCTCC AAGCAGCAGAGACAATTTAATCGATGCTGTGCAGCCCTTGACGTGCGATC GAGATTGTTTCGATCATATTTCGATCTTACTTCGGAATTAATGTGTCTAG AAGATATCATGATATTATCTTAAAAAGCCACTGCCTCGGCTCAGTTCACC ACCTCGGTTGGTCCAGCCGGCTTTTACAACCGCCCCGTTCCATTCGTTTG ATTCCCGCTTTTTGCATCGCAAGCCTTTTTTTTGCCAAAAGCTTTTCGCG CACCGGTGAGGTCCCGTCACCGCAGGCCCCACAGCAACGCAACGCTGTCC CCTCACCGCAGGGATTTCAGCACGGGAAAAGTACGTCGAAAGCTCGACTT CGTGGACGAAGTCGCGGGACCCTCCTCACCCTCGGATTCGATGTCCTCCA GTCAAAAGGTCCGTCTGGAGTGGAGTTCCCACCGTAAAGAGATGGGATGT GTGTACCGGGTGCAGCGACATCGTTCGGCAACGCAAACGATATCGTACAG AGTTGGGTTTCTTTGCGAAGGGAAGACGCTAGTCTTGCCGAGCGTCTGGG GTGTCCACCGCCCCTGTCCAGCGCTACAGTCGCCGTCTTCCTACGTGTAG GGAAGTTCACTCACTTCGTTCTCCCTGTCTTCACTGTTTTTTTCTGTGAA ACCGCCGCAGCTTTTCAACCCGCCGTTCGTCTACTCGGTTGACTTTAGTT TGGATGGGCGTTTCTTGGCGGCGGGACTAGGGAACAGCAGCGTCGTCGTT CTTGACGCTAAGACGCGAAATCCTGTCGGTCGCTGCGATGGACACGCGGC TCCGATTTCTCAGGTGCATCGGCAAGGGAAGGGGCAAAACTTGTACCAAT AGTATCTTTGTCTCATAGTTGAAGTGGTCGATAGAAGACTCGAGGGAAAA GATTGCGTTGCGACCGCGTAGCAAGGTTTAAAATAATAGTCATATTGGGA TCCCTGACATTATTCCGCTGACCCGATGAACTTGCTATTGAACACGATTT ATCACTTGTGAAGAATTTGTGCTTAAAGGCAGTATATTCGAACCTGACGA TAGTTGGTCCCCTAGAATGCACCTCTCACGGCGCTAAGAAGGTGTGGATG TTCGAAGTGTTCAAAATGAGTTCAAGGTTTTTTAATATTAATAATACATG CGGGCGTCGACGGTTAGAAAGGTGGGGGGGGCTTGAGGAAACTCCTTGCT TGCATCCCATCTGCTATCATACGTCCTAAAACCCCTAAACTTGCGCGGAT ACCATATAAACTTTTATTAAGATTATAAAAGTAATAAATATTACGTTTTC CTAAAAGATACCTGGTATGGGTACATAGTTTTCGATATTTTTTTGTTTTC ATTTTTAGAATAGGGAAGAACATACACCCCGAAGGACTCACAAATAAAGA AAGAAACCTAAAAATCTTCTATTTTAAGCATTTAACCCTTTAGGAACTGG ATTTCAATTTTTGTATTAAACTTCGTCTGTAAAAAAACAGATCGAGGTCC ATAGGGGCTAAATAAAAATCGCGAAATGAAAAGGTTGCGTCTGGGTCAAG CGAAAATACGAATATGGATATGGATATGGCTTAGACTGGGTATGGATATG GGTCCCACCGCCACCTCCGCTCCCCCGTCTACCGGTAGGTAAAAAACAAA AACACCAAGTATACTAGGTTGTAGACTGGATACGGGCATAAAAGATACCT TTGATACCTTTACCGCGTTTGTTGCTTCGTTGTTTCGTTAGTGTTAAAAG AAACAGTAATAGATTAGAGTGGGAATGGGTTGGATGTGTTGGAAACCGCG GTGGATGATGCATGATATATGATTCATGGATTATTATTAGGATCTTCGGA AATGCGTGGTTATTATTATTTTAAAACATATGAACTCATTAGAACCCTTC GAACATCCACACCTTCTTAGCACCATGAGAGGTGTAGTCCAGGGGACAGT TCCCGGCATATAATTTGCCTATATTTACAATGTAACGAACAAAGCTCCCC TCCCTCCCCTCCACCACACGCTCGCTTGACCCACGAGTAAGTGTCTATCG CACCCTCACCCTGGCCCCCTCAAAAGGTGCACTATCCTTGTTTCGACCCA AGGCTGCTGGTCTCGACGGGAAACGATCGGAGGCTTCTATTTTGGGACCA TCGGCCCTTCGAGGAAGCCGCGGAATCTCGTGACGGCAGCAGCTGCATAA ACAAAAGGGTGGGTGTGGGCACCAGCGCCCCCCGACGTGGACGGAACTCC TCACCGCTCTCCGGACGCACCGAAAAGACGCACGGGGGGAAACAACCCAC CTCGAGGAGAAACGGCGGGCGAAACAAGAAGGGAAAGAAGCATTTGTCGC GAGCCGTGACAGAGGAGGTTCGAGCGCATCGATCAGCTACAGAAGAGGAA CGAGCGGGAGGCGACGGCGCGGAGGCAGAGGACGGGTGTTGTGGGGAGGG CGAATGGCGGAGGGGAGAAGGCGGCGTGAGGTACTCGACCGCGTTGTCCA CGATGTTTCTCGAGGACAAGCCAAACAGGGTAGCCAGCCTCGTCGCGCCC TACGAAGCCTTGGTGTTGGCGGATACCAGCTCAGAGGTTAAAATAATAGG CCGGCGCGGCACGTGACCCGGGGTTGACAAATCTCGGTGGACACGGCGAC CGTTACGCTTCGTGTTATGGTGGCCCCCAACTGGCGCAACCTTCAACTAA TAATAGCCGCTGCGCTAGAAGGAAGAAAGCAAAATGAAATAAAATGTTAT CTCGGCAGCAGAGGTCGAATCTGATACTTTTTTGTTTTTACTATCTATAG CAAAAGAAAAAAAGGTAATAAATCATGGCTGTGAGAAGAAGTGGAGTTCG ATCGTAAGTTTGGCAGGGAATTGAAGGGCTTGGTCTGCGTCACAACTGAA AAATGTGTGGGTGTGAGACGGAGAGGGGTAGAGATGGAAAGCAAGATAAT TTTTGTCCACAAGCGGGGGGTTGAGACGATTGAGAGTAATCCCTCGCTGG AAGTGGGAAGGAAGCAAGCGAGAACTACAGTAGTACTATTAGTTTATACG GCAAAGCACATGAGGAAAGGAAGTAGAGATCCAACCGCATTCACCCGTGT CTGGTACTGCACAGTATATGAGATCGCGGCGAGGGTACGTCTCAAAGCTA CTGGTAGTAAATATGAACGGCCATTTCGAGCGATGTTAGTAATAGAGAAA CTATTTTTACCCCCCCCCATGAACCCGACCGGTGTAGTTCTGACCACTCT ATTTTATAGCGGGTTGGATTTGTGTTTGGTTTTCCATGGGTCTGGAAGGC ATCTTGTTCTGTACTGTACTGCTATAATATACTGTACTCTGTCCTATACA AACTATTTTGTACAACACTATACTGTACTACACTGTACTATACTAAACTA TACTGTACTATACTTTATCTTACTGTACTACCCTATATATACTGTACTGT ACTATATTATATATTATATACCGTACTATATTGCTAACCAATATACCGCA AGAGAGTCAGGGAGGAAAGGGGATACGGTCTACAGCAATTATTCGTCCTA ATTGCATTTAAGTTGTTGGAGGGGCTGGGGGCATACATATTCATATATTC ATATAATTCAACATATAACGATGTACAGTACTGGTAACCAATACGGCACA AACCGGTCGCCCTAGTAGATCAGTTGGTAACCTCGAAACCGTATGACCTT GGGACGTGAGTTCGAATCTCGGCGCAGTCACACAAACTGGGATTTTCTCT CGCATCATTGCCAACAAGTGGAGAACGAATATTTTGTGGTTAGACAAAAT TCGACATATTATACGGTCAGGTGTGCAACCAAACAAACGAGTTTGTATAC CTCGGGGGGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig20732:18..5279-

>mRNA_H-elongata_contig20732.5950.1 ID=mRNA_H-elongata_contig20732.5950.1|Name=mRNA_H-elongata_contig20732.5950.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig20732:18..5279- (Himanthalia elongata Himel1 dioecious)
ATGTGATGTGGGATTTCAGCACGGGAAAAGTACGTCGAAAGCTCGACTTC
GTGGACGAAGTCGCGGGACCCTCCTCACCCTCGGATTCGATGTCCTCCAG
TCAAAAGGGATTTCAGCACGGGAAAAGTACGTCGAAAGCTCGACTTCGTG
GACGAAGTCGCGGGACCCTCCTCACCCTCGGATTCGATGTCCTCCAGTCA
AAAGCTTTTCAACCCGCCGTTCGTCTACTCGGTTGACTTTAGTTTGGATG
GGCGTTTCTTGGCGGCGGGACTAGGGAACAGCAGCGTCGTCGTTCTTGAC
GCTAAGACGCGAAATCCTGTCGGTCGCTGCGATGGACACGCGGCTCCGAT
TTCTCAGCTTTTCAACCCGCCGTTCGTCTACTCGGTTGACTTTAGTTTGG
ATGGGCGTTTCTTGGCGGCGGGACTAGGGAACAGCAGCGTCGTCGTTCTT
GACGCTAAGACGCGAAATCCTGTCGGTCGCTGCGATGGACACGCGGCTCC
GATTTCTCAGGTGCACTATCCTTGTTTCGACCCAAGGCTGCTGGTCTCGA
CGGGAAACGATCGGAGGCTTCTATTTTGGGACCATCGGCCCTTCGAGGAA
GCCGCGGAATCTCGTGACGGCAGCAGCTGCATAAACAAAAGGGTGGGTGT
GGGCACCAGCGCCCCCCGACGTGGACGGAACTCCTCACCGCTCTCCGGAC
GCACCGAAAAGACGCACGGGGGGAAACAACCCACCTCGAGGAGAAACGGC
GGGCGAAACAAGAAGGGAAAGAAGCATTTGTCGCGAGCCGTGACAGAGGA
GGTTCGAGCGCATCGATCAGCTACAGAAGAGGAACGAGCGGGAGGCGACG
GCGCGGAGGCAGAGGACGGGTGTTGTGGGGAGGGCGAATGGCGGAGGGGA
GAAGGCGGCGTGAGGTACTCGACCGCGTTGTCCACGATGTTTCTCGAGGA
CAAGCCAAACAGGGTAGCCAGCCTCGTCGCGCCCTACGAAGCCTTGGTGT
TGGCGGATACCAGCTCAGAGGTTAAAATAATAGGCCGGCGCGGCACGTGA
GTGCACTATCCTTGTTTCGACCCAAGGCTGCTGGTCTCGACGGGAAACGA
TCGGAGGCTTCTATTTTGGGACCATCGGCCCTTCGAGGAAGCCGCGGAAT
CTCGTGACGGCAGCAGCTGCATAAACAAAAGGGTGGGTGTGGGCACCAGC
GCCCCCCGACGTGGACGGAACTCCTCACCGCTCTCCGGACGCACCGAAAA
GACGCACGGGGGGAAACAACCCACCTCGAGGAGAAACGGCGGGCGAAACA
AGAAGGGAAAGAAGCATTTGTCGCGAGCCGTGACAGAGGAGGTTCGAGCG
CATCGATCAGCTACAGAAGAGGAACGAGCGGGAGGCGACGGCGCGGAGGC
AGAGGACGGGTGTTGTGGGGAGGGCGAATGGCGGAGGGGAGAAGGCGGCG
TGAGGTACTCGACCGCGTTGTCCACGATGTTTCTCGAGGACAAGCCAAAC
AGGGTAGCCAGCCTCGTCGCGCCCTACGAAGCCTTGGTGTTGGCGGATAC
CAGCTCAGAGGTTAAAATAATAGGCCGGCGCGGCACGTGA
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