mRNA_H-elongata_contig2073.5949.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2073.5949.1
Unique NamemRNA_H-elongata_contig2073.5949.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: D7G1Z1_ECTSI (C2H2 and CCCH zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z1_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 6.610e-63
Identity = 104/167 (62.28%), Postives = 122/167 (73.05%), Query Frame = 1
Query:   91 RKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRR 591
            R+     + GPV R LSSD EFFDEGN  RALL K++VFA++ E         +D M +    Q  +EC FQDC+  FSSL+R E HYET HR+RC TC RSFPTHRLLD+HLSEAHDSFF+AMAER+PMY CLVEGC + F S+GKRH HLVE H YPE+FDFSRR
Sbjct:    6 RRSTGGLYLGPVLRPLSSDSEFFDEGNTNRALLCKLNVFAIMSE--------GADAMDLHE-DQHQFECMFQDCTATFSSLKRHEEHYETSHRHRCFTCGRSFPTHRLLDLHLSEAHDSFFRAMAERRPMYACLVEGCPEVFESSGKRHEHLVEAHLYPESFDFSRR 163          
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A836CFJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 4.850e-36
Identity = 81/174 (46.55%), Postives = 101/174 (58.05%), Query Frame = 1
Query:  115 SGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQDEEDSDVMG---IAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRVTSHPPEGRETV 627
            + P +RR   DD FF+ G+L RA   KMSV   L +     DEED+   G     GG    + C    C+  F+S  R   HY+T HR+ CATC R+F T RLLD+HLSE HDS+FKAMAE++ MY CLVEGC K F     R AH++ +H YP  FDF R     PP  + TV
Sbjct:   42 TAPFKRRYQPDDPFFEAGDLARATACKMSVLHGLWD-----DEEDAQSAGGRAHTGG----FACRIGGCNATFTSTARFNEHYDTSHRHTCATCGRAFITPRLLDLHLSELHDSYFKAMAEKRHMYECLVEGCGKKFKDNNGRRAHMIAVHHYPRAFDFHR-----PPGQKPTV 201          
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A200QGB0_9MAGN (Zinc finger protein n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QGB0_9MAGN)

HSP 1 Score: 132 bits (332), Expect = 2.880e-32
Identity = 71/174 (40.80%), Postives = 93/174 (53.45%), Query Frame = 1
Query:   76 ASITMRKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERK-PMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRV 594
            A +  R E  F +  PVRRR   D  FF  GNL+R LL+K     L E+E+ +       +  +    + A  CP   C  + +SL   E HY   H   C+ C R FPT RLL IH+SEAHDSFF+A   R  PMY CLVEGC     S   R  HLV+ H++P +F+F ++ 
Sbjct:    2 AMVAERNELGFPYWNPVRRRFEPDAPFFASGNLERELLAKQVALDLTEDERYQ-------LQSMEDEEERALYCPIVGCGARLNSLEDFEGHYHARHTASCSVCSRVFPTSRLLSIHVSEAHDSFFQAKVARGYPMYECLVEGCGMKLKSYKSRQQHLVDKHKFPTSFEFFKKA 168          
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A1J6KRE1_NICAT (C2H2-type domain-containing protein n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1J6KRE1_NICAT)

HSP 1 Score: 130 bits (326), Expect = 2.040e-31
Identity = 74/173 (42.77%), Postives = 91/173 (52.60%), Query Frame = 1
Query:   91 RKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEE----QGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERK-PMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRV 594
            + +  F F  P+RRR   DD FF  GN+QR L +K     L EEE    Q   DEE S+V            CP   C  +  SL   E HY T H   C+ C R +PT RLL IH+SEAHDSFF+A   R  PMY CLVEGC     S   R  HLV+ H++P  ++F R+ 
Sbjct:   10 QSQLGFPFWSPIRRRFRPDDPFFTAGNIQRELFAKQLALDLTEEEKQLVQNITDEESSNVF-----------CPIVGCGARMRSLDDFEHHYATRHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKVARGFPMYECLVEGCDVKLKSYKSRQQHLVDKHKFPATYEFFRKA 171          
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: G4YTN0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YTN0_PHYSP)

HSP 1 Score: 129 bits (324), Expect = 4.050e-31
Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  283 PAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRVTSHPPEGR 618
            PA  C   +C + F S+   E HY+ LHRN C  C RSF + RLLDIH+SE HD+FFK ++++KP+Y+CLV+GC KTF    KR  HL+++H+YPE+F F +R   +  +G+
Sbjct:   45 PAITCRLANCDVSFQSVAAYEEHYDMLHRNICRECSRSFLSLRLLDIHISETHDAFFKILSKKKPLYVCLVDGCPKTFQHDDKRTRHLIQVHQYPESFSFHQRRNQNKKKGK 156          
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A2J6MB23_LACSA (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6MB23_LACSA)

HSP 1 Score: 127 bits (318), Expect = 2.530e-30
Identity = 72/183 (39.34%), Postives = 96/183 (52.46%), Query Frame = 1
Query:   61 DNSETASITMRKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERK-PMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRVTSHP 606
            DN       ++ E  ++F  PV RR   DD FF  GN++R LL+K     L EEE+ E    +     +         CP   C     +L   E HY   H + C+ C R +PT RLL IH+SEAHDSFF+A A R  PMY CLVEGC     S   RH HL++ H++P  ++F ++  SHP
Sbjct:    4 DNHLQTKTQLQSEFQYWF--PVLRRFGPDDPFFASGNIERELLAKQITLDLTEEEKQEIRNFEDKYREVL--------CPIVGCGATLKTLTEFEDHYNARHTSSCSVCSRVYPTSRLLSIHVSEAHDSFFQAKAARGYPMYECLVEGCGVKLKSYKSRHQHLMDKHKFPSTYEFLKK--SHP 174          
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A251SN08_HELAN (Putative zinc ion binding,nucleic acid binding,zinc ion binding protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SN08_HELAN)

HSP 1 Score: 127 bits (318), Expect = 2.660e-30
Identity = 76/199 (38.19%), Postives = 102/199 (51.26%), Query Frame = 1
Query:   88 MRKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQ---DEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERK-PMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRVTSHPPE-GRETVCFGFNETFA*ENEK 669
            ++ ++ F +  PV RR   DD FF  GN++R LL+K     L EEE+ +    D+ DS+V            CP   C     SL   E HY   H   C+ C R +PT RLL IH+SEAHDSFF+A   R   MY CLVEGC     S   RH HL++ H +P +FDF ++      E  ++      + TF  ENE+
Sbjct:    8 LQTQSEFQYWFPVLRRFGPDDPFFASGNIERELLAKQVALDLTEEEKQQLRNLDDADSEVS-----------CPIVGCGANLRSLVEFEDHYNARHTASCSVCSRVYPTSRLLGIHVSEAHDSFFQAKVARGYAMYECLVEGCGMKLKSYKSRHQHLMDKHNFPSSFDFFKKAQPSKKERSKKNQRKQHHATFTTENEE 195          
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A4Y7JIA1_PAPSO (C2H2-type domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JIA1_PAPSO)

HSP 1 Score: 127 bits (319), Expect = 3.090e-30
Identity = 70/175 (40.00%), Postives = 93/175 (53.14%), Query Frame = 1
Query:   76 ASITMRKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGE-QDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKP-MYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRV 594
            A +  R E  F +  PV R+   D  FF  GN++R LL+K     + E+E  + QD ED +V  +         CP   C  + +SL   E HY   H   C+ C R FPT RLL IH+SEAHDSFF+A   R   MY CLVEGC     S   R  HLV+ H++P +F+F ++ 
Sbjct:    2 AMVAERNELGFPYWNPVPRKFRPDSPFFTSGNIERELLAKQVALDITEDEMYQLQDMEDEEVRALY--------CPIVGCGARLNSLEDFEGHYHARHTASCSVCSRVFPTSRLLSIHVSEAHDSFFQAKVARGYLMYECLVEGCEMKLKSYKSRQQHLVDKHKFPMSFEFFKKA 168          
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A329T424_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T424_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.100e-30
Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  115 SGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDF 582
            SG   R+ S +   FD G L  A        ++++ E+  ++   SD +           C   +C + F S+   E HYE +HRN C  C RSF + RLLDIH+SE HD+FFK ++++KPMY+CLV+GC +TF    KR  HL+++H+YPE+F F
Sbjct:    9 SGKCLRKYSPEHPLFDAGTLLWATKYYQEPESMVQPEEAVREPTHSDPIP----------CRLANCDVSFQSVAAYEEHYEMVHRNICRECSRSFLSLRLLDIHISETHDAFFKILSKKKPMYVCLVDGCSETFQHDNKRTRHLIQVHQYPESFSF 154          
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: K3WED9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WED9_GLOUD)

HSP 1 Score: 126 bits (317), Expect = 5.690e-30
Identity = 66/160 (41.25%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  115 SGPVRRRLSSDDEFFDEGNLQRAL--LSKMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSR 588
            +G  RRR S +   F  GN  R+L    +      LEE++   +E D+DV+ I       ++C    C++ F S+   E HY+ +HRN C  C +SF + RLLDIH+SE HD+FFK ++++KPMY+CLV+GC + F    KR  HLV++H+YP +F F R
Sbjct:    9 NGKCRRRYSPEHALFAAGNALRSLKYYQEGGSSHWLEEKE---EECDADVVSI-------FQCRLLTCNVGFRSVAAYEEHYDLVHRNVCLECYQSFMSLRLLDIHISERHDAFFKVLSKKKPMYVCLVDGCEEVFMHDDKRTRHLVQMHKYPSSFSFHR 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Z1_ECTSI6.610e-6362.28C2H2 and CCCH zinc finger protein n=1 Tax=Ectocarp... [more]
A0A836CFJ7_9STRA4.850e-3646.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A200QGB0_9MAGN2.880e-3240.80Zinc finger protein n=1 Tax=Macleaya cordata TaxID... [more]
A0A1J6KRE1_NICAT2.040e-3142.77C2H2-type domain-containing protein n=4 Tax=Nicoti... [more]
G4YTN0_PHYSP4.050e-3148.21Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A2J6MB23_LACSA2.530e-3039.34Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
A0A251SN08_HELAN2.660e-3038.19Putative zinc ion binding,nucleic acid binding,zin... [more]
A0A4Y7JIA1_PAPSO3.090e-3040.00C2H2-type domain-containing protein n=3 Tax=Papave... [more]
A0A329T424_9STRA4.100e-3039.74Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
K3WED9_GLOUD5.690e-3041.25Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2073contigH-elongata_contig2073:9186..12163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue3.8e-52
Seed eggNOG ortholog2880.D7G1Z1
Preferred nameZNF511
GOsGO:0000981,GO:0003674,GO:0003700,GO:0006355,GO:0006357,GO:0007275,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.zinc finger
EggNOG OGsKOG4173@1,KOG4173@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 and CCCH zinc finger protein
Ec32 orthologEc-07_003620.1
Exons5
Model size1273
Cds size615
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930158.7179136-UTR-H-elongata_contig2073:9185..92271622930158.7179136-UTR-H-elongata_contig2073:9185..9227Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2073 9186..9227 +
1691679303.570912-UTR-H-elongata_contig2073:9185..92271691679303.570912-UTR-H-elongata_contig2073:9185..9227Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2073 9186..9227 +
1622930158.8022084-UTR-H-elongata_contig2073:11266..112941622930158.8022084-UTR-H-elongata_contig2073:11266..11294Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2073 11267..11294 +
1691679303.6218228-UTR-H-elongata_contig2073:11266..112941691679303.6218228-UTR-H-elongata_contig2073:11266..11294Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2073 11267..11294 +
1622930158.8160827-UTR-H-elongata_contig2073:11575..121631622930158.8160827-UTR-H-elongata_contig2073:11575..12163Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2073 11576..12163 +
1691679303.6310382-UTR-H-elongata_contig2073:11575..121631691679303.6310382-UTR-H-elongata_contig2073:11575..12163Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2073 11576..12163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930158.732178-CDS-H-elongata_contig2073:9227..95241622930158.732178-CDS-H-elongata_contig2073:9227..9524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2073 9228..9524 +
1691679303.5828884-CDS-H-elongata_contig2073:9227..95241691679303.5828884-CDS-H-elongata_contig2073:9227..9524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2073 9228..9524 +
1622930158.7449155-CDS-H-elongata_contig2073:10332..105801622930158.7449155-CDS-H-elongata_contig2073:10332..10580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2073 10333..10580 +
1691679303.5914397-CDS-H-elongata_contig2073:10332..105801691679303.5914397-CDS-H-elongata_contig2073:10332..10580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2073 10333..10580 +
1622930158.7634552-CDS-H-elongata_contig2073:10954..110121622930158.7634552-CDS-H-elongata_contig2073:10954..11012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2073 10955..11012 +
1691679303.6037939-CDS-H-elongata_contig2073:10954..110121691679303.6037939-CDS-H-elongata_contig2073:10954..11012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2073 10955..11012 +
1622930158.7788596-CDS-H-elongata_contig2073:11254..112661622930158.7788596-CDS-H-elongata_contig2073:11254..11266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2073 11255..11266 +
1691679303.6128354-CDS-H-elongata_contig2073:11254..112661691679303.6128354-CDS-H-elongata_contig2073:11254..11266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2073 11255..11266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2073.5949.1prot_H-elongata_contig2073.5949.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2073 9228..11266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2073.5949.1

>prot_H-elongata_contig2073.5949.1 ID=prot_H-elongata_contig2073.5949.1|Name=mRNA_H-elongata_contig2073.5949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
MRLAFGDNSETASITMRKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLS
KMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRV
EAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICL
VEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRVTSHPPEGRETVCFGFN
ETFA*
back to top

mRNA from alignment at H-elongata_contig2073:9186..12163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2073.5949.1 ID=mRNA_H-elongata_contig2073.5949.1|Name=mRNA_H-elongata_contig2073.5949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2978bp|location=Sequence derived from alignment at H-elongata_contig2073:9186..12163+ (Himanthalia elongata Himel1 dioecious)
AATCATTACAGTACAGATAGACCAGTGACGACGCAGGTGACGATGCGGTT GGCCTTCGGAGATAACTCCGAGACAGCCAGCATCACAATGCGGAAAGAGG CCAACTTTTTCTTTTCAGGCCCTGTACGGAGACGGCTAAGCTCGGATGAT GAGTTTTTCGATGAGGGAAACCTGCAGCGAGCCCTGCTGAGCAAGATGAG TGTGTTCGCTTTGTTGGAGGAAGAACAAGGCGAACAAGACGAGGAGGACT CGGATGTCATGGGGATCGCCGGAGGCAGTCAGCCAGCGTACGAATGCCCG TTTCAAGATTGCTCTATTAAATTTTCTTCTTTGAGACGGGTGAGACCCCG GCGGCCCGGACCTTGTAACACTTGGAGGCGGCTGTACGTTCTATACAGTC GATCGGCTCATCCAGGGAGTCAAAGGACTCTATTGTCCATGTCCTGGGGG CTCAAAAACTGTCAGCCTCCACTCAGTTATTCCTTGGGTATTTATGGAGC CGCTCCTGACCCTTCTTATCCGATTATGCTTCCGCTTCCTCGCGTCAGAA ATGTTTTGCCAATGGGAATGTTTTGTTCTCCAGCCGAAATAAGGAAAACC CCCCAGCATGCACTAATTATTACTAACACATTCGGATCCATGTTTAGACC TACAGAAAGTGTGTCGTGTCCTAGAGCTTTTCCACTTTGGTCGCCGAGGC TCTCAAGAGTCGACCACCGACAGCTGCACGGTCAGCGAGCCTCAGCTGCG ACTTCGCCAACCAGTGCAACATAAATTGTCCAAAGTTTTATATAATTAGG CGGTCGCTTTACTGCGTGAGCTCTTGAGTGTGAAACAAATTCCGTATGTA CTGAGTTGAAGTACTTTACGTCGACCCGTGCTCGCATCGCTTTCCTCCCG TGCGGGCTGACGATCGCCCGCCTAACCCGGCACCGAAGGACATCGTCTGC TGAATGACTGTACCGACGCGCCAGCAGCCCTTAACTTACTGCCTCCTCTT TCTTCCCTGTACCTACCTTGAAGATTTCCCCTGCGCCCCATCTCTAGCCC TGTCATCTCACCCACCCCTGTCCTGCGCAAAGCAAACGAAACGGCACGGG TTTTGACCAAATGTACGCGTCACCACGTCTACTTTACTGTTTTACAGGTA GAAGCTCACTACGAGACGTTGCACCGAAACCGCTGCGCCACCTGCGACCG GAGTTTCCCCACGCACCGTCTCCTCGATATCCACCTGAGTGAGGCGCACG ACTCGTTCTTCAAAGCCATGGCAGAGAGGAAGCCGATGTATATATGCCTC GTGGAAGGCTGTAGAAAGACGTTCTGGTCCACGGGAAAGCGGCACGCGCA CCTTGTTGAAATCCACCGCTACCCGGAGAACTTCGACTTCAGCAGGTGCG GCGAAGTTCCCCGCCCTCAACACCCCCAAGTATCTAACGGCACATTCCTT TTATTTTATCTGCGCTTTCTGCCGGACGGGGTTCAATGCAGCCCCCTCAT CGCTGAAACTTGCCCAGTTAGTTGAAACGTGCCCCGAATGGGTGGAGGGC TTTCCCGTATGTAATGGGGAGGGGTCAAACATCCGTGCGAGAGAAAAACA TCTCGTTGGATCTGCGTGAAAGCAGTTTGCGTAAGAAGGACGGAAGGGAT ATAGTCCAAAGCTCGAAGAATCAATTGCTGGCGGCGCGCGAGAAATTTAA ACCTCTATAACACGTTTAGAGGAGTACCGGCACGTGCGCAAAATATATGA TCAAAATCCTGCACCACAGGAGGGTCACGTCGCACCCGCCCGAGGGGAGG GAGACAGTGTGTTTCGGCTTTAATGAGGTACGGAATTAGTTTGACGCATT TTGCATAACTCTCTAGCTTGCTAACGAACAGTCTTAGAGAGATCTCGAGA TACAGTAGAGGGAGAATATAATCACTGGGTTATTTGTGTCTTTCACGCCT TGCGCGGCTATTACGACTTCCATCTTCAGGTATCGGTTCGAGGAATCTAA CCCCTCGGACATGCTCAATCGACAAATATTTCCCCCATCACCTCCGCCGC CGCTGCTTCCGATGTACAGACCTTCGCTTGAGAGAACGAGAAGAGATGGG CGTGACAGGGCCAAGCGTGTCGCGCGTTGCCGTCGAAAACAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCTAGCGGCCCAGGCGAGCGCGGCGGGAT CTGCTGAACCGGCTGTTGCCCCAGCGATCGAGACGTGGGACAAAAGCGAG AGCGATCGCGTTGAATCGATTAAAGTAATGCGTGGGGTAAACGGCGGCGA GCCGACTGCTGAGGATGGTGGTGATATGGACGTCGAAGGTTGTGGGGAAG CTGTAGCGGGTGAGCAGGCGCCGTCAAACCGGGAGAAGAGTCTGCCCAAG GGCGCAACGGGTCCGAGAAAACGTGCGCCGCGCAAGTGTAAGTTCTGGCG GACAAGAGAAGGTTGTCGCGCCGGAAGCAGGTGTAAGTTCAGGCACGACG CGCCCGAGCCTCGAGGAATGAGGAAGGGAACGGTAATTGGCGCGGAGCAG GAAGCGGCAGCCAGACAAGAAGGATCGGGATCAGCAGGTGGGGCGGAAGA TGGTGTGGAAGAAGGAGGTCATGGCGCGGGCATTATTTTGGCGTCAAAAA TCGGGGTGGAGGGCAGTGGGATGGTGGCAGCTGGCGTGGATGAGCTCGTC GTTGGTATGAAGAAACTCTCGATTCCCACGACCCTGAGCTTCGGGAGGAC TGCCCGCCGGGGAAGGCTTTTAGGCAGTGCCAAAAGGTGATTCACTTAAA TCACATCGTCACGATGCGATTTTTCCCTTAGGAGTCGAGATCTTCCAGGC ATTTACGGACTCGCGCTTGATCGATTTCATGGTGAACTGTGGACAGTAGT CGGGCTAGAAAGCAGGGGTTCGTGGGGGAAAATCAATTGGGAAACGTTTG AGTAGGCGCGATGACAATACAAGCAGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig2073:9186..12163+

>mRNA_H-elongata_contig2073.5949.1 ID=mRNA_H-elongata_contig2073.5949.1|Name=mRNA_H-elongata_contig2073.5949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig2073:9186..12163+ (Himanthalia elongata Himel1 dioecious)
ATGCGGTTGGCCTTCGGAGATAACTCCGAGACAGCCAGCATCACAATGCG
GAAAGAGGCCAACTTTTTCTTTTCAGGCCCTGTACGGAGACGGCTAAGCT
CGGATGATGAGTTTTTCGATGAGGGAAACCTGCAGCGAGCCCTGCTGAGC
AAGATGAGTGTGTTCGCTTTGTTGGAGGAAGAACAAGGCGAACAAGACGA
GGAGGACTCGGATGTCATGGGGATCGCCGGAGGCAGTCAGCCAGCGTACG
AATGCCCGTTTCAAGATTGCTCTATTAAATTTTCTTCTTTGAGACGGATG
CGGTTGGCCTTCGGAGATAACTCCGAGACAGCCAGCATCACAATGCGGAA
AGAGGCCAACTTTTTCTTTTCAGGCCCTGTACGGAGACGGCTAAGCTCGG
ATGATGAGTTTTTCGATGAGGGAAACCTGCAGCGAGCCCTGCTGAGCAAG
ATGAGTGTGTTCGCTTTGTTGGAGGAAGAACAAGGCGAACAAGACGAGGA
GGACTCGGATGTCATGGGGATCGCCGGAGGCAGTCAGCCAGCGTACGAAT
GCCCGTTTCAAGATTGCTCTATTAAATTTTCTTCTTTGAGACGGGTAGAA
GCTCACTACGAGACGTTGCACCGAAACCGCTGCGCCACCTGCGACCGGAG
TTTCCCCACGCACCGTCTCCTCGATATCCACCTGAGTGAGGCGCACGACT
CGTTCTTCAAAGCCATGGCAGAGAGGAAGCCGATGTATATATGCCTCGTG
GAAGGCTGTAGAAAGACGTTCTGGTCCACGGGAAAGCGGCACGCGCACCT
TGTTGAAATCCACCGCTACCCGGAGAACTTCGACTTCAGCAGGTAGAAGC
TCACTACGAGACGTTGCACCGAAACCGCTGCGCCACCTGCGACCGGAGTT
TCCCCACGCACCGTCTCCTCGATATCCACCTGAGTGAGGCGCACGACTCG
TTCTTCAAAGCCATGGCAGAGAGGAAGCCGATGTATATATGCCTCGTGGA
AGGCTGTAGAAAGACGTTCTGGTCCACGGGAAAGCGGCACGCGCACCTTG
TTGAAATCCACCGCTACCCGGAGAACTTCGACTTCAGCAGGAGGGTCACG
TCGCACCCGCCCGAGGGGAGGGAGACAGTGTGTTTCGGCTTTAATGAGGA
GGGTCACGTCGCACCCGCCCGAGGGGAGGGAGACAGTGTGTTTCGGCTTT
AATGAGACCTTCGCTTGAACCTTCGCTTGA
back to top