mRNA_H-elongata_contig2073.5949.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: D7G1Z1_ECTSI (C2H2 and CCCH zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z1_ECTSI) HSP 1 Score: 209 bits (532), Expect = 6.610e-63 Identity = 104/167 (62.28%), Postives = 122/167 (73.05%), Query Frame = 1
Query: 91 RKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRR 591
R+ + GPV R LSSD EFFDEGN RALL K++VFA++ E +D M + Q +EC FQDC+ FSSL+R E HYET HR+RC TC RSFPTHRLLD+HLSEAHDSFF+AMAER+PMY CLVEGC + F S+GKRH HLVE H YPE+FDFSRR
Sbjct: 6 RRSTGGLYLGPVLRPLSSDSEFFDEGNTNRALLCKLNVFAIMSE--------GADAMDLHE-DQHQFECMFQDCTATFSSLKRHEEHYETSHRHRCFTCGRSFPTHRLLDLHLSEAHDSFFRAMAERRPMYACLVEGCPEVFESSGKRHEHLVEAHLYPESFDFSRR 163
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A836CFJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ7_9STRA) HSP 1 Score: 145 bits (366), Expect = 4.850e-36 Identity = 81/174 (46.55%), Postives = 101/174 (58.05%), Query Frame = 1
Query: 115 SGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQDEEDSDVMG---IAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRVTSHPPEGRETV 627
+ P +RR DD FF+ G+L RA KMSV L + DEED+ G GG + C C+ F+S R HY+T HR+ CATC R+F T RLLD+HLSE HDS+FKAMAE++ MY CLVEGC K F R AH++ +H YP FDF R PP + TV
Sbjct: 42 TAPFKRRYQPDDPFFEAGDLARATACKMSVLHGLWD-----DEEDAQSAGGRAHTGG----FACRIGGCNATFTSTARFNEHYDTSHRHTCATCGRAFITPRLLDLHLSELHDSYFKAMAEKRHMYECLVEGCGKKFKDNNGRRAHMIAVHHYPRAFDFHR-----PPGQKPTV 201
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A200QGB0_9MAGN (Zinc finger protein n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QGB0_9MAGN) HSP 1 Score: 132 bits (332), Expect = 2.880e-32 Identity = 71/174 (40.80%), Postives = 93/174 (53.45%), Query Frame = 1
Query: 76 ASITMRKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERK-PMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRV 594
A + R E F + PVRRR D FF GNL+R LL+K L E+E+ + + + + A CP C + +SL E HY H C+ C R FPT RLL IH+SEAHDSFF+A R PMY CLVEGC S R HLV+ H++P +F+F ++
Sbjct: 2 AMVAERNELGFPYWNPVRRRFEPDAPFFASGNLERELLAKQVALDLTEDERYQ-------LQSMEDEEERALYCPIVGCGARLNSLEDFEGHYHARHTASCSVCSRVFPTSRLLSIHVSEAHDSFFQAKVARGYPMYECLVEGCGMKLKSYKSRQQHLVDKHKFPTSFEFFKKA 168
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A1J6KRE1_NICAT (C2H2-type domain-containing protein n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1J6KRE1_NICAT) HSP 1 Score: 130 bits (326), Expect = 2.040e-31 Identity = 74/173 (42.77%), Postives = 91/173 (52.60%), Query Frame = 1
Query: 91 RKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEE----QGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERK-PMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRV 594
+ + F F P+RRR DD FF GN+QR L +K L EEE Q DEE S+V CP C + SL E HY T H C+ C R +PT RLL IH+SEAHDSFF+A R PMY CLVEGC S R HLV+ H++P ++F R+
Sbjct: 10 QSQLGFPFWSPIRRRFRPDDPFFTAGNIQRELFAKQLALDLTEEEKQLVQNITDEESSNVF-----------CPIVGCGARMRSLDDFEHHYATRHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKVARGFPMYECLVEGCDVKLKSYKSRQQHLVDKHKFPATYEFFRKA 171
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: G4YTN0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YTN0_PHYSP) HSP 1 Score: 129 bits (324), Expect = 4.050e-31 Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = 1
Query: 283 PAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRVTSHPPEGR 618
PA C +C + F S+ E HY+ LHRN C C RSF + RLLDIH+SE HD+FFK ++++KP+Y+CLV+GC KTF KR HL+++H+YPE+F F +R + +G+
Sbjct: 45 PAITCRLANCDVSFQSVAAYEEHYDMLHRNICRECSRSFLSLRLLDIHISETHDAFFKILSKKKPLYVCLVDGCPKTFQHDDKRTRHLIQVHQYPESFSFHQRRNQNKKKGK 156
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A2J6MB23_LACSA (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6MB23_LACSA) HSP 1 Score: 127 bits (318), Expect = 2.530e-30 Identity = 72/183 (39.34%), Postives = 96/183 (52.46%), Query Frame = 1
Query: 61 DNSETASITMRKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERK-PMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRVTSHP 606
DN ++ E ++F PV RR DD FF GN++R LL+K L EEE+ E + + CP C +L E HY H + C+ C R +PT RLL IH+SEAHDSFF+A A R PMY CLVEGC S RH HL++ H++P ++F ++ SHP
Sbjct: 4 DNHLQTKTQLQSEFQYWF--PVLRRFGPDDPFFASGNIERELLAKQITLDLTEEEKQEIRNFEDKYREVL--------CPIVGCGATLKTLTEFEDHYNARHTSSCSVCSRVYPTSRLLSIHVSEAHDSFFQAKAARGYPMYECLVEGCGVKLKSYKSRHQHLMDKHKFPSTYEFLKK--SHP 174
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A251SN08_HELAN (Putative zinc ion binding,nucleic acid binding,zinc ion binding protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SN08_HELAN) HSP 1 Score: 127 bits (318), Expect = 2.660e-30 Identity = 76/199 (38.19%), Postives = 102/199 (51.26%), Query Frame = 1
Query: 88 MRKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQ---DEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERK-PMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRVTSHPPE-GRETVCFGFNETFA*ENEK 669
++ ++ F + PV RR DD FF GN++R LL+K L EEE+ + D+ DS+V CP C SL E HY H C+ C R +PT RLL IH+SEAHDSFF+A R MY CLVEGC S RH HL++ H +P +FDF ++ E ++ + TF ENE+
Sbjct: 8 LQTQSEFQYWFPVLRRFGPDDPFFASGNIERELLAKQVALDLTEEEKQQLRNLDDADSEVS-----------CPIVGCGANLRSLVEFEDHYNARHTASCSVCSRVYPTSRLLGIHVSEAHDSFFQAKVARGYAMYECLVEGCGMKLKSYKSRHQHLMDKHNFPSSFDFFKKAQPSKKERSKKNQRKQHHATFTTENEE 195
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A4Y7JIA1_PAPSO (C2H2-type domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JIA1_PAPSO) HSP 1 Score: 127 bits (319), Expect = 3.090e-30 Identity = 70/175 (40.00%), Postives = 93/175 (53.14%), Query Frame = 1
Query: 76 ASITMRKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGE-QDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKP-MYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSRRV 594
A + R E F + PV R+ D FF GN++R LL+K + E+E + QD ED +V + CP C + +SL E HY H C+ C R FPT RLL IH+SEAHDSFF+A R MY CLVEGC S R HLV+ H++P +F+F ++
Sbjct: 2 AMVAERNELGFPYWNPVPRKFRPDSPFFTSGNIERELLAKQVALDITEDEMYQLQDMEDEEVRALY--------CPIVGCGARLNSLEDFEGHYHARHTASCSVCSRVFPTSRLLSIHVSEAHDSFFQAKVARGYLMYECLVEGCEMKLKSYKSRQQHLVDKHKFPMSFEFFKKA 168
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: A0A329T424_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T424_9STRA) HSP 1 Score: 127 bits (318), Expect = 4.100e-30 Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 1
Query: 115 SGPVRRRLSSDDEFFDEGNLQRALLSKMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDF 582
SG R+ S + FD G L A ++++ E+ ++ SD + C +C + F S+ E HYE +HRN C C RSF + RLLDIH+SE HD+FFK ++++KPMY+CLV+GC +TF KR HL+++H+YPE+F F
Sbjct: 9 SGKCLRKYSPEHPLFDAGTLLWATKYYQEPESMVQPEEAVREPTHSDPIP----------CRLANCDVSFQSVAAYEEHYEMVHRNICRECSRSFLSLRLLDIHISETHDAFFKILSKKKPMYVCLVDGCSETFQHDNKRTRHLIQVHQYPESFSF 154
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Match: K3WED9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WED9_GLOUD) HSP 1 Score: 126 bits (317), Expect = 5.690e-30 Identity = 66/160 (41.25%), Postives = 97/160 (60.62%), Query Frame = 1
Query: 115 SGPVRRRLSSDDEFFDEGNLQRAL--LSKMSVFALLEEEQGEQDEEDSDVMGIAGGSQPAYECPFQDCSIKFSSLRRVEAHYETLHRNRCATCDRSFPTHRLLDIHLSEAHDSFFKAMAERKPMYICLVEGCRKTFWSTGKRHAHLVEIHRYPENFDFSR 588
+G RRR S + F GN R+L + LEE++ +E D+DV+ I ++C C++ F S+ E HY+ +HRN C C +SF + RLLDIH+SE HD+FFK ++++KPMY+CLV+GC + F KR HLV++H+YP +F F R
Sbjct: 9 NGKCRRRYSPEHALFAAGNALRSLKYYQEGGSSHWLEEKE---EECDADVVSI-------FQCRLLTCNVGFRSVAAYEEHYDLVHRNVCLECYQSFMSLRLLDIHISERHDAFFKVLSKKKPMYVCLVDGCEEVFMHDDKRTRHLVQMHKYPSSFSFHR 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2073.5949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig2073.5949.1 >prot_H-elongata_contig2073.5949.1 ID=prot_H-elongata_contig2073.5949.1|Name=mRNA_H-elongata_contig2073.5949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp MRLAFGDNSETASITMRKEANFFFSGPVRRRLSSDDEFFDEGNLQRALLSback to top mRNA from alignment at H-elongata_contig2073:9186..12163+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig2073.5949.1 ID=mRNA_H-elongata_contig2073.5949.1|Name=mRNA_H-elongata_contig2073.5949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2978bp|location=Sequence derived from alignment at H-elongata_contig2073:9186..12163+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig2073:9186..12163+ >mRNA_H-elongata_contig2073.5949.1 ID=mRNA_H-elongata_contig2073.5949.1|Name=mRNA_H-elongata_contig2073.5949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig2073:9186..12163+ (Himanthalia elongata Himel1 dioecious)back to top |