mRNA_H-elongata_contig207213.5944.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207213.5944.1
Unique NamemRNA_H-elongata_contig207213.5944.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207213.5944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207213contigH-elongata_contig207213:233..745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size474
Cds size474
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930158.147181-CDS-H-elongata_contig207213:232..4751622930158.147181-CDS-H-elongata_contig207213:232..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207213 233..475 -
1691679303.288935-CDS-H-elongata_contig207213:232..4751691679303.288935-CDS-H-elongata_contig207213:232..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207213 233..475 -
1622930158.1628234-CDS-H-elongata_contig207213:514..7451622930158.1628234-CDS-H-elongata_contig207213:514..745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207213 515..745 -
1691679303.2970257-CDS-H-elongata_contig207213:514..7451691679303.2970257-CDS-H-elongata_contig207213:514..745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207213 515..745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207213.5944.1prot_H-elongata_contig207213.5944.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207213 233..745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207213.5944.1

>prot_H-elongata_contig207213.5944.1 ID=prot_H-elongata_contig207213.5944.1|Name=mRNA_H-elongata_contig207213.5944.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
MFAGRGNDHGSNPSPRCQICSHTGHTAQGCKEFHDLKKGQKTSDGKGRNN
GNRGGGNSKFKHRNAKSRNHVTGGNKNSDDCPNRADSTDTAADVGPKHGG
FAGNLRGSLGAGLFASVSSVSTLIANNATKRPKERPGSEFWVNDSGATEH
MTQDPAGL
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mRNA from alignment at H-elongata_contig207213:233..745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207213.5944.1 ID=mRNA_H-elongata_contig207213.5944.1|Name=mRNA_H-elongata_contig207213.5944.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig207213:233..745- (Himanthalia elongata Himel1 dioecious)
ATGTTCGCGGGACGCGGCAATGACCATGGATCGAACCCCTCCCCCCGCTG
CCAAATTTGCTCGCATACAGGTCATACTGCTCAGGGGTGCAAGGAGTTCC
ATGATCTAAAAAAGGGGCAGAAGACCAGCGACGGCAAAGGCCGAAACAAC
GGAAACCGCGGCGGGGGCAATAGTAAATTTAAGCACCGCAACGCAAAGAG
CAGGAACCACGTCACTGGCGGGAACAAGAACGTACGCCCCGGGTGCTACT
TCTGCGAGGGGGCGCACAAGTCCGACGATTGCCCGAACCGTGCAGACTCT
ACCGACACAGCAGCCGACGTTGGCCCCAAACACGGCGGGTTTGCTGGGAA
TTTGCGTGGCAGCCTCGGGGCTGGTTTGTTCGCCAGCGTCAGCTCTGTAT
CAACACTGATCGCCAACAACGCCACCAAGCGGCCGAAGGAACGGCCTGGG
AGCGAATTCTGGGTGAACGATAGCGGTGCGACAGAGCACATGACACAGGA
CCCGGCGGGTCTA
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Coding sequence (CDS) from alignment at H-elongata_contig207213:233..745-

>mRNA_H-elongata_contig207213.5944.1 ID=mRNA_H-elongata_contig207213.5944.1|Name=mRNA_H-elongata_contig207213.5944.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig207213:233..745- (Himanthalia elongata Himel1 dioecious)
ATGTTCGCGGGACGCGGCAATGACCATGGATCGAACCCCTCCCCCCGCTG
CCAAATTTGCTCGCATACAGGTCATACTGCTCAGGGGTGCAAGGAGTTCC
ATGATCTAAAAAAGGGGCAGAAGACCAGCGACGGCAAAGGCCGAAACAAC
GGAAACCGCGGCGGGGGCAATAGTAAATTTAAGCACCGCAACGCAAAGAG
CAGGAACCACGTCACTGGCGGGAACAAGAACATGTTCGCGGGACGCGGCA
ATGACCATGGATCGAACCCCTCCCCCCGCTGCCAAATTTGCTCGCATACA
GGTCATACTGCTCAGGGGTGCAAGGAGTTCCATGATCTAAAAAAGGGGCA
GAAGACCAGCGACGGCAAAGGCCGAAACAACGGAAACCGCGGCGGGGGCA
ATAGTAAATTTAAGCACCGCAACGCAAAGAGCAGGAACCACGTCACTGGC
GGGAACAAGAACTCCGACGATTGCCCGAACCGTGCAGACTCTACCGACAC
AGCAGCCGACGTTGGCCCCAAACACGGCGGGTTTGCTGGGAATTTGCGTG
GCAGCCTCGGGGCTGGTTTGTTCGCCAGCGTCAGCTCTGTATCAACACTG
ATCGCCAACAACGCCACCAAGCGGCCGAAGGAACGGCCTGGGAGCGAATT
CTGGGTGAACGATAGCGGTGCGACAGAGCACATGACACAGGACCCGGCGG
GTCTATCCGACGATTGCCCGAACCGTGCAGACTCTACCGACACAGCAGCC
GACGTTGGCCCCAAACACGGCGGGTTTGCTGGGAATTTGCGTGGCAGCCT
CGGGGCTGGTTTGTTCGCCAGCGTCAGCTCTGTATCAACACTGATCGCCA
ACAACGCCACCAAGCGGCCGAAGGAACGGCCTGGGAGCGAATTCTGGGTG
AACGATAGCGGTGCGACAGAGCACATGACACAGGACCCGGCGGGTCTA
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