mRNA_H-elongata_contig20721.5943.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20721.5943.1
Unique NamemRNA_H-elongata_contig20721.5943.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Match: A0A433PUW4_9FUNG (TPR repeat-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433PUW4_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 7.800e-10
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   19 QGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLARLLQSQ 147
            +G+YD A PLY+RALEIREK+LG+EHPD A  LNNLA +  +Q
Sbjct:   20 KGKYDMAAPLYERALEIREKELGSEHPDTATSLNNLALVYNNQ 62
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BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Match: A0A3M0WY91_9BACT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A3M0WY91_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 4.710e-9
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   19 QGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLARL 135
            QG YD A+PLYKR+LEI EK LG EHPDVA+ LNNLA L
Sbjct:    5 QGLYDKAEPLYKRSLEIYEKTLGQEHPDVALSLNNLALL 43
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BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Match: A0A1A8Q7P6_9TELE (Kinesin light chain n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8Q7P6_9TELE)

HSP 1 Score: 62.8 bits (151), Expect = 1.370e-8
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 HIIQGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLARLLQSQ 147
            H ++G+Y +A+PL KRALEIREK LG +HPDVA  LNNLA L Q+Q
Sbjct:   68 HNLRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 113
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BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Match: A0A6M0ALV0_9CYAN (Tetratricopeptide repeat protein n=1 Tax=Moorena sp. SIO4G2 TaxID=2607820 RepID=A0A6M0ALV0_9CYAN)

HSP 1 Score: 58.9 bits (141), Expect = 1.460e-8
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   19 QGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLARLLQSQ 147
            QG+Y +A PL +RALEIR++ LG EHPDVAI LNNLA   +SQ
Sbjct:   30 QGKYSEAIPLAERALEIRQEILGEEHPDVAISLNNLAGFYESQ 72
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BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Match: A0A1U7N198_9CYAN (Uncharacterized protein n=3 Tax=Moorena TaxID=1155738 RepID=A0A1U7N198_9CYAN)

HSP 1 Score: 58.9 bits (141), Expect = 4.010e-8
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   19 QGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLARLLQSQ 147
            QG+Y +A PL +RALEIR++ LG EHPDVAI LNNLA   +SQ
Sbjct:   74 QGKYSEAIPLAERALEIRQEILGEEHPDVAISLNNLAGFYESQ 116
[Close]
BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Match: A0A0J9EWN6_9CYAN (Kinesin (Fragment) n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0J9EWN6_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 1.240e-7
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   19 QGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLARLLQSQ 147
            QG+Y++A+PLY+R+L IREK LG  HPDVA+ LNNLA    SQ
Sbjct:   19 QGRYNEAEPLYQRSLAIREKVLGENHPDVALSLNNLASFYLSQ 61
[Close]
BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Match: UPI000A03459B (CHAT domain-containing protein n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI000A03459B)

HSP 1 Score: 60.5 bits (145), Expect = 1.280e-7
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   19 QGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLARLLQSQ 147
            QG+YD+A+PLY++ALE+R++ LG +HP VA  LNNLA L +SQ
Sbjct:    2 QGRYDEAEPLYRQALEMRKRLLGEQHPSVASSLNNLAALYESQ 44
[Close]
BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Match: A0A1D8TRT8_9CYAN (Uncharacterized protein n=1 Tax=Moorena producens PAL-8-15-08-1 TaxID=1458985 RepID=A0A1D8TRT8_9CYAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.380e-7
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   19 QGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLARLLQSQ 147
            QG+Y +A PL +RALEIR++ LG EHPDVA  LNNLA L +SQ
Sbjct:   69 QGKYSEAIPLAERALEIRQEILGEEHPDVAESLNNLALLYKSQ 111
[Close]
BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Match: UPI000A752B74 (tetratricopeptide repeat protein n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI000A752B74)

HSP 1 Score: 56.6 bits (135), Expect = 1.910e-7
Identity = 23/37 (62.16%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   19 QGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLA 129
            QG+Y++A+PLY++ALE+R++ LG +HPDVA  LNNLA
Sbjct:    8 QGRYEEAEPLYRQALEMRKRLLGEQHPDVATSLNNLA 44
[Close]
BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Match: UPI001114F8C9 (tetratricopeptide repeat protein n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI001114F8C9)

HSP 1 Score: 56.2 bits (134), Expect = 2.130e-7
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   19 QGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLARL 135
            QG+YD+A+PLY++ALE+R++ LG +HP VA  LNNLA L
Sbjct:    5 QGRYDEAEPLYRQALEMRKRLLGEQHPSVASSLNNLALL 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20721.5943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A433PUW4_9FUNG7.800e-1065.12TPR repeat-containing protein (Fragment) n=1 Tax=J... [more]
A0A3M0WY91_9BACT4.710e-974.36Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A1A8Q7P6_9TELE1.370e-865.22Kinesin light chain n=1 Tax=Nothobranchius pienaar... [more]
A0A6M0ALV0_9CYAN1.460e-865.12Tetratricopeptide repeat protein n=1 Tax=Moorena s... [more]
A0A1U7N198_9CYAN4.010e-865.12Uncharacterized protein n=3 Tax=Moorena TaxID=1155... [more]
A0A0J9EWN6_9CYAN1.240e-762.79Kinesin (Fragment) n=1 Tax=Limnoraphis robusta CS-... [more]
UPI000A03459B1.280e-760.47CHAT domain-containing protein n=1 Tax=Geitlerinem... [more]
A0A1D8TRT8_9CYAN1.380e-765.12Uncharacterized protein n=1 Tax=Moorena producens ... [more]
UPI000A752B741.910e-762.16tetratricopeptide repeat protein n=1 Tax=Geitlerin... [more]
UPI001114F8C92.130e-761.54tetratricopeptide repeat protein n=1 Tax=Geitlerin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20721contigH-elongata_contig20721:2633..4351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size501
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20721.5943.1prot_H-elongata_contig20721.5943.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20721 2633..4351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930158.0255234-CDS-H-elongata_contig20721:2632..27791622930158.0255234-CDS-H-elongata_contig20721:2632..2779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20721 2633..2779 +
1691679303.2506392-CDS-H-elongata_contig20721:2632..27791691679303.2506392-CDS-H-elongata_contig20721:2632..2779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20721 2633..2779 +
1622930158.0422323-CDS-H-elongata_contig20721:3117..32431622930158.0422323-CDS-H-elongata_contig20721:3117..3243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20721 3118..3243 +
1691679303.2653282-CDS-H-elongata_contig20721:3117..32431691679303.2653282-CDS-H-elongata_contig20721:3117..3243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20721 3118..3243 +
1622930158.0725033-CDS-H-elongata_contig20721:3886..40121622930158.0725033-CDS-H-elongata_contig20721:3886..4012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20721 3887..4012 +
1691679303.273633-CDS-H-elongata_contig20721:3886..40121691679303.273633-CDS-H-elongata_contig20721:3886..4012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20721 3887..4012 +
1622930158.0911398-CDS-H-elongata_contig20721:4249..43511622930158.0911398-CDS-H-elongata_contig20721:4249..4351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20721 4250..4351 +
1691679303.2813296-CDS-H-elongata_contig20721:4249..43511691679303.2813296-CDS-H-elongata_contig20721:4249..4351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20721 4250..4351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20721.5943.1

>prot_H-elongata_contig20721.5943.1 ID=prot_H-elongata_contig20721.5943.1|Name=mRNA_H-elongata_contig20721.5943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
CAFHIIQGQYDDAKPLYKRALEIREKKLGNEHPDVAICLNNLARLLQSQG
DFDGAKSLYERALDIRKTKLGADHPDVAKSQNNLAELLREMGDYDRSAKL
LKEAIDIYKKAQRPDHGNIATFQNNLAGVLNAKGQRDEAKKLYEEAIDIR
ERVQGRDHPDVAIDLTN
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mRNA from alignment at H-elongata_contig20721:2633..4351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20721.5943.1 ID=mRNA_H-elongata_contig20721.5943.1|Name=mRNA_H-elongata_contig20721.5943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1719bp|location=Sequence derived from alignment at H-elongata_contig20721:2633..4351+ (Himanthalia elongata Himel1 dioecious)
TGTGCCTTCCATATCATCCAGGGCCAGTATGACGATGCCAAGCCACTCTA
CAAGCGTGCCTTGGAAATCCGCGAGAAAAAGTTAGGCAATGAACACCCGG
ATGTTGCTATATGTCTAAACAATCTGGCGAGATTGTTACAGTCACAGGTG
ATGTTCATGAGTATCCCTTCGATAGATCTTTGACGACCATGGGTGCTCCG
AGGCACCGTTATGTATTTTTCGTAAATAATTATTTTCATGATAATGACGA
TTCTCAGTAAGAAGGGCGGGTGTTTGTGCCGGCAGTCTAGAGCATGACGT
TTCTACTCCTCCTGGTCTTTGAACTGATGGGATAGGTCTGGGGAAAACTC
TACAGCTACTGTACCATAAACATTAATGCGGCTATTCTGTATTGATTCGG
GTTACGCGGGCCGTCATCGATCAAGTTCTTCCTCTGTATGCCTAGTTCTA
ACAACATCGACGCCCCGTCTTCCTTCACATTTCAGGGAGATTTTGACGGA
GCGAAGTCTTTATATGAGCGTGCCCTCGATATCCGCAAAACAAAGCTAGG
CGCTGACCACCCGGACGTGGCAAAGAGTCAAAACAACTTGGCAGAGCTAT
TGCGAGAAATGGTGATGATCGAAGGGGATTAACCCGATATCGACTGGCGT
GTTCGGAGGCGCCATTGTGGGGTTTGGTGACGTTTTCTTAGGAGTCCACG
GTCCCAAATTTTAACTTTCAGAAGTACTTTGAGACATACATGTCTCCGGG
AATTCTATTCTGTGTTTGGAATCCCTAATGTTTTGTCCAGAGGTGAAGTA
GCGGGGGCAGGAGAGAGGCTGTAGCGGTCGTCCGACTCAGTTTCGTAAGC
AACGCAAGTAGGATATGTCAACCCAACGTCTTCAGGGATAGCTCCCCATA
AGGAGAGAGTATTTGCAAACCGGCGTGGCGCCCCCTTATGCGTCATGCCG
GTTTGCGCGATATAATGCAAATTGATATTAATGACCCTATTTCATTTCGC
CTCGTTGCAAAACCCTCGAAAAAATAAAAATCGCTGTTTTTAGGGGGTGG
CTATAGTTGCACTACTACTATGTCGCTGATGACACTAGAGTATGAAGTTG
AAGGGGGCATTCGCTCGTGCTCCAGTGGGCAGATAAGGTAATTTCATAGG
GCAGCATATGGTAGGGGCTTTGTTGTTAAGAAATATGTCTTAATAGTTCC
TCTGCATTCCAAGCTTTTACACCACTCGCGTTGCGTATGTTTGTCGCATC
ACAGGGCGACTACGACAGGTCTGCGAAGCTTTTGAAAGAGGCCATCGACA
TCTATAAGAAAGCGCAAAGGCCTGATCACGGAAATATAGCGACATTTCAA
AACAACCTGGCGGGGGTGTTAAACGCAAAGGTGCTACTCGATGGGCAACT
ATTTTTTATTTATTTTTTCACGAGGGTTAATCGTGACATCGTTATTAGCA
AGTATCTACTATATAGCGGCAAGACCTTTCCCACTCAAGAAAAAACAAAA
CAAAACATGCTGAACATTGTGCATCATTGATGAGAAAAAACGCTGCGTCT
TTGAAAATTTACTCTAGTCGTCTATTTTCTTGCCACACTCGCTCACGCTT
CTTTTGTCCAACTACAGGGCCAGCGTGATGAGGCAAAAAAACTGTACGAA
GAAGCTATTGACATACGCGAACGGGTGCAAGGTCGTGACCACCCGGATGT
GGCTATAGATCTCACGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig20721:2633..4351+

>mRNA_H-elongata_contig20721.5943.1 ID=mRNA_H-elongata_contig20721.5943.1|Name=mRNA_H-elongata_contig20721.5943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig20721:2633..4351+ (Himanthalia elongata Himel1 dioecious)
TGTGCCTTCCATATCATCCAGGGCCAGTATGACGATGCCAAGCCACTCTA
CAAGCGTGCCTTGGAAATCCGCGAGAAAAAGTTAGGCAATGAACACCCGG
ATGTTGCTATATGTCTAAACAATCTGGCGAGATTGTTACAGTCACAGTGT
GCCTTCCATATCATCCAGGGCCAGTATGACGATGCCAAGCCACTCTACAA
GCGTGCCTTGGAAATCCGCGAGAAAAAGTTAGGCAATGAACACCCGGATG
TTGCTATATGTCTAAACAATCTGGCGAGATTGTTACAGTCACAGGGAGAT
TTTGACGGAGCGAAGTCTTTATATGAGCGTGCCCTCGATATCCGCAAAAC
AAAGCTAGGCGCTGACCACCCGGACGTGGCAAAGAGTCAAAACAACTTGG
CAGAGCTATTGCGAGAAATGGGAGATTTTGACGGAGCGAAGTCTTTATAT
GAGCGTGCCCTCGATATCCGCAAAACAAAGCTAGGCGCTGACCACCCGGA
CGTGGCAAAGAGTCAAAACAACTTGGCAGAGCTATTGCGAGAAATGGGCG
ACTACGACAGGTCTGCGAAGCTTTTGAAAGAGGCCATCGACATCTATAAG
AAAGCGCAAAGGCCTGATCACGGAAATATAGCGACATTTCAAAACAACCT
GGCGGGGGTGTTAAACGCAAAGGGCGACTACGACAGGTCTGCGAAGCTTT
TGAAAGAGGCCATCGACATCTATAAGAAAGCGCAAAGGCCTGATCACGGA
AATATAGCGACATTTCAAAACAACCTGGCGGGGGTGTTAAACGCAAAGGG
CCAGCGTGATGAGGCAAAAAAACTGTACGAAGAAGCTATTGACATACGCG
AACGGGTGCAAGGTCGTGACCACCCGGATGTGGCTATAGATCTCACGAAC
GGCCAGCGTGATGAGGCAAAAAAACTGTACGAAGAAGCTATTGACATACG
CGAACGGGTGCAAGGTCGTGACCACCCGGATGTGGCTATAGATCTCACGA
AC
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