mRNA_H-elongata_contig20719.5942.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A2R4QPX8_9PHAE (Conserved hypothetical plastid protein n=2 Tax=Fucus TaxID=3011 RepID=A0A2R4QPX8_9PHAE) HSP 1 Score: 224 bits (571), Expect = 3.920e-74 Identity = 108/115 (93.91%), Postives = 114/115 (99.13%), Query Frame = 1
Query: 1 MDDILKLALEVKLFESPPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 345
M++I KLALEV+LFESPPPFDPS+FAIKD+LNLIIYFMKVFLRQYYWVLTLRLS+QWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF
Sbjct: 1 MENIFKLALEVQLFESPPPFDPSDFAIKDILNLIIYFMKVFLRQYYWVLTLRLSIQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 115
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A1L2F1J6_9PHAE (Ycf19 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1J6_9PHAE) HSP 1 Score: 189 bits (481), Expect = 2.080e-60 Identity = 90/115 (78.26%), Postives = 103/115 (89.57%), Query Frame = 1
Query: 1 MDDILKLALEVKLFESPPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 345
M++I KLALE FES F+P NF I+D+LN IIYF+KVFLRQYYW+LTLRLS+QWFPNINPYIHP+Y LIF+TEFFLKQFK+LLPIILGMDMSAMCAFLCLEW+IRTL+SI F
Sbjct: 1 MENIFKLALETGRFESSQNFNPLNFEIRDILNFIIYFIKVFLRQYYWILTLRLSIQWFPNINPYIHPIYALIFSTEFFLKQFKNLLPIILGMDMSAMCAFLCLEWIIRTLDSINF 115
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A8F0F7Z7_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Z7_9PHAE) HSP 1 Score: 169 bits (428), Expect = 2.830e-52 Identity = 74/113 (65.49%), Postives = 99/113 (87.61%), Query Frame = 1
Query: 10 ILKLALEVKLFESPPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKFI 348
I+ L + +FE P FDP++F DVLN++++F+K+ LRQYYW+LTLRLS+QWFPNINPYIHPMY+L++AT+FFLK+F++++P ILGMDMS+MCAF+CLEWMIRTLESI F+
Sbjct: 6 IMILCSQAPMFEPFPAFDPNDFTTFDVLNMVVHFLKLALRQYYWILTLRLSIQWFPNINPYIHPMYSLLYATDFFLKEFEEIIPAILGMDMSSMCAFICLEWMIRTLESITFV 118
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A0S0GAB4_COSCS (Uncharacterized protein n=25 Tax=Laminariales TaxID=2886 RepID=A0A0S0GAB4_COSCS) HSP 1 Score: 141 bits (356), Expect = 2.530e-41 Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 1
Query: 1 MDDILKLALEVKLFESPPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 345
M D L L + V FE P +P+++ ++LNL++ M LRQYYW+LTLRLS+QWFPNINPYIHPMY+L+ AT+FFLK+F D++P +LGMDMS+MCAF+ LEW+IRTLESI F
Sbjct: 1 MTDTLMLMV-VASFEWPS-LNPNDYTRAEMLNLLVTAMVAGLRQYYWILTLRLSIQWFPNINPYIHPMYSLLHATDFFLKEFDDIVPTVLGMDMSSMCAFIFLEWIIRTLESITF 113
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A8F0JZ04_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ04_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.480e-40 Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = 1
Query: 52 PPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 345
P +P+++ + LNL++ M LRQYYW+LTLRLSVQWFPNINPYIHPMY+LI AT+FFLK+F ++P +LGMDMS+MCAF+ LEWMIRTLESI F
Sbjct: 28 PSLNPNDYTRAEKLNLLVVAMIAGLRQYYWILTLRLSVQWFPNINPYIHPMYSLIHATDFFLKEFDHIVPTVLGMDMSSMCAFIFLEWMIRTLESITF 125
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A8F0FC81_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC81_9PHAE) HSP 1 Score: 122 bits (306), Expect = 5.000e-34 Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 67 SNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 345
F KD N + + LR YYWVLTLRLSVQWFPNINPYIHP+Y L+ AT+FFL+ F+ ++P ILGMDMSAMCAF+ LEW+IRT ++IKF
Sbjct: 2 QTFDTKDWANEFLVWTADALRVYYWVLTLRLSVQWFPNINPYIHPVYVLLHATDFFLESFEGIVPNILGMDMSAMCAFIFLEWVIRTCQAIKF 94
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: D1J703_ECTSI (Uncharacterized protein ycf19 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J703_ECTSI) HSP 1 Score: 122 bits (306), Expect = 1.050e-33 Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 1
Query: 49 PPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESI 339
P ++ KD L L I F +FL+ YYW L++R VQWFPNINPYIHP++ LI T+ FLK+F+DLLP ILGMD+SAM AFLCLEWMIRTL+SI
Sbjct: 21 PQQMTLNDLTQKDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIAITDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSI 117
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A6B7EZ30_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZ30_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.280e-33 Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 67 SNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESI 339
N KD L L I F +FL+ YYW L++R VQWFPN+NPYIHPM+ LI T+ FLK+F+ LLP I GMDMSAM AF+CLEWMIRTLESI
Sbjct: 22 DNLEKKDYLILTILFTVLFLKGYYWALSIRFVVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESI 112
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A7T8G5F0_SCYLO (Ycf19 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5F0_SCYLO) HSP 1 Score: 120 bits (301), Expect = 6.220e-33 Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 82 KDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKFI 348
+D L L I F +FL+ YYW L++R VQWFPN+NPYIHPM+ LI T+ FLK+F+ LLP I GMDMSAM AF+CLEWMIRTLESI I
Sbjct: 33 RDYLFLTILFTVLFLKGYYWALSIRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESIVII 121
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A2I4Q2N4_9PHAE (Uncharacterized protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2N4_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.450e-32 Identity = 54/96 (56.25%), Postives = 77/96 (80.21%), Query Frame = 1
Query: 61 DPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKFI 348
DP+ IK +LN +I ++ R YYW+LT+R+++QWFP+INPYI P+Y LI AT+F+L+QF L+P ILG+DM+ MCAF+CLEW+IRTL++I F+
Sbjct: 27 DPTG--IKSILNGMIELLRFGARLYYWILTIRVTLQWFPSINPYIFPLYMLIHATDFYLEQFTGLVPTILGIDMTTMCAFVCLEWIIRTLDAISFV 120 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20719.5942.1 >prot_H-elongata_contig20719.5942.1 ID=prot_H-elongata_contig20719.5942.1|Name=mRNA_H-elongata_contig20719.5942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp MDDILKLALEVKLFESPPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTback to top mRNA from alignment at H-elongata_contig20719:6082..6432- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20719.5942.1 ID=mRNA_H-elongata_contig20719.5942.1|Name=mRNA_H-elongata_contig20719.5942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig20719:6082..6432- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20719:6082..6432- >mRNA_H-elongata_contig20719.5942.1 ID=mRNA_H-elongata_contig20719.5942.1|Name=mRNA_H-elongata_contig20719.5942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig20719:6082..6432- (Himanthalia elongata Himel1 dioecious)back to top |