mRNA_H-elongata_contig20719.5942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20719.5942.1
Unique NamemRNA_H-elongata_contig20719.5942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A2R4QPX8_9PHAE (Conserved hypothetical plastid protein n=2 Tax=Fucus TaxID=3011 RepID=A0A2R4QPX8_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 3.920e-74
Identity = 108/115 (93.91%), Postives = 114/115 (99.13%), Query Frame = 1
Query:    1 MDDILKLALEVKLFESPPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 345
            M++I KLALEV+LFESPPPFDPS+FAIKD+LNLIIYFMKVFLRQYYWVLTLRLS+QWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF
Sbjct:    1 MENIFKLALEVQLFESPPPFDPSDFAIKDILNLIIYFMKVFLRQYYWVLTLRLSIQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 115          
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A1L2F1J6_9PHAE (Ycf19 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1J6_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.080e-60
Identity = 90/115 (78.26%), Postives = 103/115 (89.57%), Query Frame = 1
Query:    1 MDDILKLALEVKLFESPPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 345
            M++I KLALE   FES   F+P NF I+D+LN IIYF+KVFLRQYYW+LTLRLS+QWFPNINPYIHP+Y LIF+TEFFLKQFK+LLPIILGMDMSAMCAFLCLEW+IRTL+SI F
Sbjct:    1 MENIFKLALETGRFESSQNFNPLNFEIRDILNFIIYFIKVFLRQYYWILTLRLSIQWFPNINPYIHPIYALIFSTEFFLKQFKNLLPIILGMDMSAMCAFLCLEWIIRTLDSINF 115          
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A8F0F7Z7_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Z7_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 2.830e-52
Identity = 74/113 (65.49%), Postives = 99/113 (87.61%), Query Frame = 1
Query:   10 ILKLALEVKLFESPPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKFI 348
            I+ L  +  +FE  P FDP++F   DVLN++++F+K+ LRQYYW+LTLRLS+QWFPNINPYIHPMY+L++AT+FFLK+F++++P ILGMDMS+MCAF+CLEWMIRTLESI F+
Sbjct:    6 IMILCSQAPMFEPFPAFDPNDFTTFDVLNMVVHFLKLALRQYYWILTLRLSIQWFPNINPYIHPMYSLLYATDFFLKEFEEIIPAILGMDMSSMCAFICLEWMIRTLESITFV 118          
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A0S0GAB4_COSCS (Uncharacterized protein n=25 Tax=Laminariales TaxID=2886 RepID=A0A0S0GAB4_COSCS)

HSP 1 Score: 141 bits (356), Expect = 2.530e-41
Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 MDDILKLALEVKLFESPPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 345
            M D L L + V  FE P   +P+++   ++LNL++  M   LRQYYW+LTLRLS+QWFPNINPYIHPMY+L+ AT+FFLK+F D++P +LGMDMS+MCAF+ LEW+IRTLESI F
Sbjct:    1 MTDTLMLMV-VASFEWPS-LNPNDYTRAEMLNLLVTAMVAGLRQYYWILTLRLSIQWFPNINPYIHPMYSLLHATDFFLKEFDDIVPTVLGMDMSSMCAFIFLEWIIRTLESITF 113          
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A8F0JZ04_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ04_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.480e-40
Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   52 PPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 345
            P  +P+++   + LNL++  M   LRQYYW+LTLRLSVQWFPNINPYIHPMY+LI AT+FFLK+F  ++P +LGMDMS+MCAF+ LEWMIRTLESI F
Sbjct:   28 PSLNPNDYTRAEKLNLLVVAMIAGLRQYYWILTLRLSVQWFPNINPYIHPMYSLIHATDFFLKEFDHIVPTVLGMDMSSMCAFIFLEWMIRTLESITF 125          
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A8F0FC81_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC81_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 5.000e-34
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 1
Query:   67 SNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKF 345
              F  KD  N  + +    LR YYWVLTLRLSVQWFPNINPYIHP+Y L+ AT+FFL+ F+ ++P ILGMDMSAMCAF+ LEW+IRT ++IKF
Sbjct:    2 QTFDTKDWANEFLVWTADALRVYYWVLTLRLSVQWFPNINPYIHPVYVLLHATDFFLESFEGIVPNILGMDMSAMCAFIFLEWVIRTCQAIKF 94          
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: D1J703_ECTSI (Uncharacterized protein ycf19 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J703_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.050e-33
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 1
Query:   49 PPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESI 339
            P     ++   KD L L I F  +FL+ YYW L++R  VQWFPNINPYIHP++ LI  T+ FLK+F+DLLP ILGMD+SAM AFLCLEWMIRTL+SI
Sbjct:   21 PQQMTLNDLTQKDYLALTILFTVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIAITDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSI 117          
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A6B7EZ30_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZ30_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.280e-33
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   67 SNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESI 339
             N   KD L L I F  +FL+ YYW L++R  VQWFPN+NPYIHPM+ LI  T+ FLK+F+ LLP I GMDMSAM AF+CLEWMIRTLESI
Sbjct:   22 DNLEKKDYLILTILFTVLFLKGYYWALSIRFVVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESI 112          
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A7T8G5F0_SCYLO (Ycf19 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5F0_SCYLO)

HSP 1 Score: 120 bits (301), Expect = 6.220e-33
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   82 KDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKFI 348
            +D L L I F  +FL+ YYW L++R  VQWFPN+NPYIHPM+ LI  T+ FLK+F+ LLP I GMDMSAM AF+CLEWMIRTLESI  I
Sbjct:   33 RDYLFLTILFTVLFLKGYYWALSIRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESIVII 121          
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Match: A0A2I4Q2N4_9PHAE (Uncharacterized protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2N4_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.450e-32
Identity = 54/96 (56.25%), Postives = 77/96 (80.21%), Query Frame = 1
Query:   61 DPSNFAIKDVLNLIIYFMKVFLRQYYWVLTLRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAFLCLEWMIRTLESIKFI 348
            DP+   IK +LN +I  ++   R YYW+LT+R+++QWFP+INPYI P+Y LI AT+F+L+QF  L+P ILG+DM+ MCAF+CLEW+IRTL++I F+
Sbjct:   27 DPTG--IKSILNGMIELLRFGARLYYWILTIRVTLQWFPSINPYIFPLYMLIHATDFYLEQFTGLVPTILGIDMTTMCAFVCLEWIIRTLDAISFV 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20719.5942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QPX8_9PHAE3.920e-7493.91Conserved hypothetical plastid protein n=2 Tax=Fuc... [more]
A0A1L2F1J6_9PHAE2.080e-6078.26Ycf19 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L... [more]
A0A8F0F7Z7_9PHAE2.830e-5265.49Uncharacterized protein n=2 Tax=Laminariales TaxID... [more]
A0A0S0GAB4_COSCS2.530e-4160.87Uncharacterized protein n=25 Tax=Laminariales TaxI... [more]
A0A8F0JZ04_9PHAE1.480e-4066.33Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A8F0FC81_9PHAE5.000e-3463.44Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]
D1J703_ECTSI1.050e-3361.86Uncharacterized protein ycf19 n=2 Tax=Ectocarpus s... [more]
A0A6B7EZ30_9PHAE1.280e-3364.84Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A7T8G5F0_SCYLO6.220e-3365.17Ycf19 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0... [more]
A0A2I4Q2N4_9PHAE2.450e-3256.25Uncharacterized protein n=1 Tax=Dictyopteris divar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20719contigH-elongata_contig20719:6082..6432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.9825594-CDS-H-elongata_contig20719:6081..64321622930157.9825594-CDS-H-elongata_contig20719:6081..6432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20719 6082..6432 -
1691679303.2430038-CDS-H-elongata_contig20719:6081..64321691679303.2430038-CDS-H-elongata_contig20719:6081..6432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20719 6082..6432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20719.5942.1prot_H-elongata_contig20719.5942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20719 6082..6432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20719.5942.1

>prot_H-elongata_contig20719.5942.1 ID=prot_H-elongata_contig20719.5942.1|Name=mRNA_H-elongata_contig20719.5942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MDDILKLALEVKLFESPPPFDPSNFAIKDVLNLIIYFMKVFLRQYYWVLT
LRLSVQWFPNINPYIHPMYTLIFATEFFLKQFKDLLPIILGMDMSAMCAF
LCLEWMIRTLESIKFI*
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mRNA from alignment at H-elongata_contig20719:6082..6432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20719.5942.1 ID=mRNA_H-elongata_contig20719.5942.1|Name=mRNA_H-elongata_contig20719.5942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig20719:6082..6432- (Himanthalia elongata Himel1 dioecious)
ATGGACGATATTCTCAAATTAGCATTAGAGGTGAAACTATTTGAATCACC TCCACCTTTTGATCCTTCAAACTTTGCAATTAAGGATGTATTAAATCTCA TTATTTATTTTATGAAAGTTTTTCTTAGGCAATATTATTGGGTTTTAACA TTAAGGTTATCTGTACAATGGTTTCCAAATATTAATCCATATATTCATCC AATGTATACATTAATATTTGCTACAGAATTTTTTTTAAAACAGTTTAAAG ATTTATTACCAATTATATTAGGAATGGATATGTCAGCTATGTGCGCATTT CTTTGCTTAGAGTGGATGATAAGAACTTTAGAATCTATAAAATTTATATA A
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Coding sequence (CDS) from alignment at H-elongata_contig20719:6082..6432-

>mRNA_H-elongata_contig20719.5942.1 ID=mRNA_H-elongata_contig20719.5942.1|Name=mRNA_H-elongata_contig20719.5942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig20719:6082..6432- (Himanthalia elongata Himel1 dioecious)
ATGGACGATATTCTCAAATTAGCATTAGAGGTGAAACTATTTGAATCACC
TCCACCTTTTGATCCTTCAAACTTTGCAATTAAGGATGTATTAAATCTCA
TTATTTATTTTATGAAAGTTTTTCTTAGGCAATATTATTGGGTTTTAACA
TTAAGGTTATCTGTACAATGGTTTCCAAATATTAATCCATATATTCATCC
AATGTATACATTAATATTTGCTACAGAATTTTTTTTAAAACAGTTTAAAG
ATTTATTACCAATTATATTAGGAATGGATATGTCAGCTATGTGCGCATTT
CTTTGCTTAGAGTGGATGATAAGAACTTTAGAATCTATAAAATTTATATA
AATGGACGATATTCTCAAATTAGCATTAGAGGTGAAACTATTTGAATCAC
CTCCACCTTTTGATCCTTCAAACTTTGCAATTAAGGATGTATTAAATCTC
ATTATTTATTTTATGAAAGTTTTTCTTAGGCAATATTATTGGGTTTTAAC
ATTAAGGTTATCTGTACAATGGTTTCCAAATATTAATCCATATATTCATC
CAATGTATACATTAATATTTGCTACAGAATTTTTTTTAAAACAGTTTAAA
GATTTATTACCAATTATATTAGGAATGGATATGTCAGCTATGTGCGCATT
TCTTTGCTTAGAGTGGATGATAAGAACTTTAGAATCTATAAAATTTATAT
AA
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