mRNA_H-elongata_contig20719.5941.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A2R4QQ10_9PHAE (30S ribosomal protein S4 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ10_9PHAE) HSP 1 Score: 325 bits (834), Expect = 2.440e-111 Identity = 176/208 (84.62%), Postives = 187/208 (89.90%), Query Frame = 1
Query: 1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
MVRYRGPR+KIIKKLG+LPGLTRK IKKK+ KKET K SAYKIRLNEKQKLRYNYGITESQLL+YVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQ VNHGHVLIN KKVNIPSFQC+P DI+SFSSKSKTNNLLK N S+ + DKVSTSHL+FDKQSLTAKI NLVNRKDLRFKINDMLVIEYYSRL+
Sbjct: 1 MVRYRGPRIKIIKKLGELPGLTRKAIKKKNVNQKKET------KASAYKIRLNEKQKLRYNYGITESQLLSYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLINNKKVNIPSFQCRPKDIISFSSKSKTNNLLKINSSEPNHLTDKVSTSHLEFDKQSLTAKINNLVNRKDLRFKINDMLVIEYYSRLS 202
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A8F0JYE9_9PHAE (Ribosomal protein S4 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JYE9_9PHAE) HSP 1 Score: 312 bits (800), Expect = 4.860e-106 Identity = 165/210 (78.57%), Postives = 186/210 (88.57%), Query Frame = 1
Query: 1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQL--SPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
MVRYRGPRLKIIK+ GDLPGLTRK++ KK + K+T D+K+ K SAYKIRLNEKQKLRYNYGITESQLL YVKEARR+KGLTGFLLMQLLEMRLDN+IFRLGLAPTIPAARQFVNHGHV+INKK+VNIPSFQC+PND++SFS+K KT LLK+NL++ S SND VS SHL+FD + LT KI NL+ RKDLRFKINDMLVIEYYSRLA
Sbjct: 1 MVRYRGPRLKIIKRFGDLPGLTRKVVVKKQSSQGKDTADQKKPKASAYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNVIFRLGLAPTIPAARQFVNHGHVIINKKRVNIPSFQCRPNDLISFSTKPKTIALLKSNLNEAEGSNSNDNVSNSHLEFDPKLLTGKILNLIQRKDLRFKINDMLVIEYYSRLA 210
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A8F0F9Q9_9PHAE (Ribosomal protein S4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Q9_9PHAE) HSP 1 Score: 310 bits (794), Expect = 3.990e-105 Identity = 164/210 (78.10%), Postives = 184/210 (87.62%), Query Frame = 1
Query: 1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQ--LSPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
MVRYRGPRLKIIK+ GDLPGLTRK++ KK Y KETND+ SK SAYKIRLNEKQKLRYNYG+TE QLL YVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQ VNHGHVLINKK+VNIPSFQC+PND +SFS+K KT L+K+NL+Q S S D +STSHL+FD +SLT +I NL+ RKDL+FKINDMLVIEYYSRL+
Sbjct: 1 MVRYRGPRLKIIKRFGDLPGLTRKVVLKKQNKYGKETNDQNLSKASAYKIRLNEKQKLRYNYGVTELQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQLVNHGHVLINKKRVNIPSFQCRPNDSISFSTKPKTITLIKSNLNQGDNSTSKDNISTSHLEFDPKSLTGEIKNLIQRKDLKFKINDMLVIEYYSRLS 210
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A141BSI8_9PHAE (30S ribosomal protein S4, chloroplastic n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSI8_9PHAE) HSP 1 Score: 308 bits (788), Expect = 3.050e-104 Identity = 167/208 (80.29%), Postives = 178/208 (85.58%), Query Frame = 1
Query: 1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
MVRYRGPRLKIIKKLG LPGLTRK+I K SK+SAYKIRLNEKQKLRYNYGITESQLLTYVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGL PTIPA RQFV+HGHVL+NKKKVNIPSFQC+PNDI+SFSSKSK NLLK NLSQ++ D VSTSHL FD+QSLTAKI LV +KDL FKINDMLVIEYYSRLA
Sbjct: 1 MVRYRGPRLKIIKKLGQLPGLTRKIIIKXXXXXXXXXXXXXXSKSSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLVPTIPAGRQFVSHGHVLVNKKKVNIPSFQCRPNDIISFSSKSKITNLLKTNLSQINYITDNVSTSHLKFDQQSLTAKINRLVTQKDLSFKINDMLVIEYYSRLA 208
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A8F0FB40_9PHAE (Ribosomal protein S4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB40_9PHAE) HSP 1 Score: 306 bits (784), Expect = 1.330e-103 Identity = 163/210 (77.62%), Postives = 183/210 (87.14%), Query Frame = 1
Query: 1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQL--SPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
MVRYRGPRLKIIKK G+LPGLTRK++ KK K+ ND+K+SK S+YKIRLNEKQKLRYNYG+TESQLL YVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLIN+KKVNIPSFQC+PND+++FS+K KT LLK+N + S SN+ +S SHL+FD SL KI NLV RKDLRFKINDMLVIEYYSRLA
Sbjct: 1 MVRYRGPRLKIIKKFGELPGLTRKVVVKKQNSSGKDINDQKKSKASSYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINEKKVNIPSFQCRPNDVITFSTKPKTITLLKSNSNHEDNSNSNNDISNSHLEFDYNSLKGKIKNLVKRKDLRFKINDMLVIEYYSRLA 210
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: D1J700_ECTSI (30S ribosomal protein S4, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J700_ECTSI) HSP 1 Score: 301 bits (771), Expect = 1.030e-101 Identity = 163/210 (77.62%), Postives = 179/210 (85.24%), Query Frame = 1
Query: 1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSPSN--DKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
MVRYRGPRLKII +LGDLPGLTRK++ K+ET ++K+SK S YKIRLNEKQKLRYNYGITESQLL YVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFV+HGHV+INKK+VNIPSFQCQPNDI+SFS KT L+K NL+Q SN D VS SHL+FD Q LT KI NL+ RKDLRFKINDMLVIEYYSRL
Sbjct: 1 MVRYRGPRLKIINRLGDLPGLTRKVV------IKQETPEQKKSKASPYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCQPNDIISFSKNPKTVTLIKANLNQKENSNPNDNVSNSHLEFDSQLLTGKIVNLIQRKDLRFKINDMLVIEYYSRLV 204
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A0S0FBJ9_COSCS (30S ribosomal protein S4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0S0FBJ9_COSCS) HSP 1 Score: 301 bits (770), Expect = 1.800e-101 Identity = 163/210 (77.62%), Postives = 179/210 (85.24%), Query Frame = 1
Query: 1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQ--LSPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
MVRYRGPRLKIIK+ GDLPGLTRK++ KK KE ++K K SAYKIRLNEKQKLRYNYGITESQLL YVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQ VNHGHVL+NKK+VNIPSFQC+PND +SFS K K LLK+NL+Q S SND + SHL+FD++ LT KI NLV RKDLRFKINDMLVIEYYSRLA
Sbjct: 1 MVRYRGPRLKIIKRFGDLPGLTRKVVLKKQGTQGKEATEQKTPKASAYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLVNKKRVNIPSFQCRPNDSISFSVKPKIMALLKSNLNQGENSTSNDNILNSHLEFDQKLLTGKILNLVKRKDLRFKINDMLVIEYYSRLA 210
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A6B7EXY2_9PHAE (30S ribosomal protein S4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXY2_9PHAE) HSP 1 Score: 295 bits (756), Expect = 1.980e-99 Identity = 157/210 (74.76%), Postives = 182/210 (86.67%), Query Frame = 1
Query: 1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSP--SNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
MVRYRGPRLKII +LGDLPGLTRK++ K+++ ++K+SK S YKIRLNEKQKLRYNYGITESQLL YVKEA+R+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFV+HGHV+INKK+VNIPSFQC+PNDI+SFS+K KT L+K+NL+Q +ND +S SHL+FD + LT KI NL+ RKDLRFKINDMLVIEYYSRL
Sbjct: 1 MVRYRGPRLKIINRLGDLPGLTRKVV------IKQDSKEQKKSKDSPYKIRLNEKQKLRYNYGITESQLLRYVKEAKRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCRPNDIISFSTKPKTVTLIKSNLNQGENLNANDNISNSHLEFDSKLLTGKILNLIQRKDLRFKINDMLVIEYYSRLV 204
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A8F0F7Q2_9PHAE (Ribosomal protein S4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7Q2_9PHAE) HSP 1 Score: 279 bits (713), Expect = 7.670e-93 Identity = 155/211 (73.46%), Postives = 178/211 (84.36%), Query Frame = 1
Query: 1 MVRYRGPRLKIIKKLGDLPGLTRK-LIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSPSN--DKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
MVRY GPRLKIIK+ G+LPGLT K LI +K K ND++++K SAYKIRLNEKQKLRYNYG+TESQLL YVKEARRKKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFV+HGHVLIN KKVNIPSFQCQPND++SFS+K KT +L+K+NL Q N ++S SHL+FD++ LT KI NLV R+DL F INDMLVIEYYSRL+
Sbjct: 1 MVRYIGPRLKIIKRFGELPGLTTKILIDEKG----KPPNDKQKTKVSAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRKKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVSHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKSNLRQNKGLNINPELSNSHLEFDQKLLTGKIKNLVKREDLSFNINDMLVIEYYSRLS 207
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A8E5XRG0_9PHAE (30S ribosomal protein S4, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRG0_9PHAE) HSP 1 Score: 258 bits (660), Expect = 1.190e-84 Identity = 139/216 (64.35%), Postives = 171/216 (79.17%), Query Frame = 1
Query: 1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETN---DEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSPS-----NDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
M RYRGPRLKI+++LG+LPGLTRK+I K+ ++ N +K K S +KIRL EKQKLRYNYGI ESQL YV EARR+KGLTGFLL+QLLEMR+DNII+RLGL PTIPAARQF+ HGHVLINK++VNIPSFQCQPND ++FS++ + LLK+NL Q + + N ++S HL+FD +SLT KI +LVNR D+ +INDMLVIEYYSRLA
Sbjct: 1 MARYRGPRLKIVRRLGELPGLTRKVISTKTERQSQDKNTGLQKKNQKGSTFKIRLCEKQKLRYNYGIAESQLRKYVIEARRRKGLTGFLLLQLLEMRVDNIIYRLGLVPTIPAARQFITHGHVLINKRRVNIPSFQCQPNDFITFSTRPEIIQLLKSNLDQSNSTAETFENKEISNQHLEFDPKSLTVKIKDLVNRNDVSLQINDMLVIEYYSRLA 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20719.5941.1 >prot_H-elongata_contig20719.5941.1 ID=prot_H-elongata_contig20719.5941.1|Name=mRNA_H-elongata_contig20719.5941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIback to top mRNA from alignment at H-elongata_contig20719:4438..5064- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20719.5941.1 ID=mRNA_H-elongata_contig20719.5941.1|Name=mRNA_H-elongata_contig20719.5941.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=627bp|location=Sequence derived from alignment at H-elongata_contig20719:4438..5064- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20719:4438..5064- >mRNA_H-elongata_contig20719.5941.1 ID=mRNA_H-elongata_contig20719.5941.1|Name=mRNA_H-elongata_contig20719.5941.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig20719:4438..5064- (Himanthalia elongata Himel1 dioecious)back to top |