mRNA_H-elongata_contig20719.5941.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20719.5941.1
Unique NamemRNA_H-elongata_contig20719.5941.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A2R4QQ10_9PHAE (30S ribosomal protein S4 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ10_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 2.440e-111
Identity = 176/208 (84.62%), Postives = 187/208 (89.90%), Query Frame = 1
Query:    1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
            MVRYRGPR+KIIKKLG+LPGLTRK IKKK+   KKET      K SAYKIRLNEKQKLRYNYGITESQLL+YVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQ VNHGHVLIN KKVNIPSFQC+P DI+SFSSKSKTNNLLK N S+ +   DKVSTSHL+FDKQSLTAKI NLVNRKDLRFKINDMLVIEYYSRL+
Sbjct:    1 MVRYRGPRIKIIKKLGELPGLTRKAIKKKNVNQKKET------KASAYKIRLNEKQKLRYNYGITESQLLSYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLINNKKVNIPSFQCRPKDIISFSSKSKTNNLLKINSSEPNHLTDKVSTSHLEFDKQSLTAKINNLVNRKDLRFKINDMLVIEYYSRLS 202          
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A8F0JYE9_9PHAE (Ribosomal protein S4 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JYE9_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 4.860e-106
Identity = 165/210 (78.57%), Postives = 186/210 (88.57%), Query Frame = 1
Query:    1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQL--SPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
            MVRYRGPRLKIIK+ GDLPGLTRK++ KK +   K+T D+K+ K SAYKIRLNEKQKLRYNYGITESQLL YVKEARR+KGLTGFLLMQLLEMRLDN+IFRLGLAPTIPAARQFVNHGHV+INKK+VNIPSFQC+PND++SFS+K KT  LLK+NL++   S SND VS SHL+FD + LT KI NL+ RKDLRFKINDMLVIEYYSRLA
Sbjct:    1 MVRYRGPRLKIIKRFGDLPGLTRKVVVKKQSSQGKDTADQKKPKASAYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNVIFRLGLAPTIPAARQFVNHGHVIINKKRVNIPSFQCRPNDLISFSTKPKTIALLKSNLNEAEGSNSNDNVSNSHLEFDPKLLTGKILNLIQRKDLRFKINDMLVIEYYSRLA 210          
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A8F0F9Q9_9PHAE (Ribosomal protein S4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Q9_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 3.990e-105
Identity = 164/210 (78.10%), Postives = 184/210 (87.62%), Query Frame = 1
Query:    1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQ--LSPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
            MVRYRGPRLKIIK+ GDLPGLTRK++ KK   Y KETND+  SK SAYKIRLNEKQKLRYNYG+TE QLL YVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQ VNHGHVLINKK+VNIPSFQC+PND +SFS+K KT  L+K+NL+Q   S S D +STSHL+FD +SLT +I NL+ RKDL+FKINDMLVIEYYSRL+
Sbjct:    1 MVRYRGPRLKIIKRFGDLPGLTRKVVLKKQNKYGKETNDQNLSKASAYKIRLNEKQKLRYNYGVTELQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQLVNHGHVLINKKRVNIPSFQCRPNDSISFSTKPKTITLIKSNLNQGDNSTSKDNISTSHLEFDPKSLTGEIKNLIQRKDLKFKINDMLVIEYYSRLS 210          
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A141BSI8_9PHAE (30S ribosomal protein S4, chloroplastic n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSI8_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 3.050e-104
Identity = 167/208 (80.29%), Postives = 178/208 (85.58%), Query Frame = 1
Query:    1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
            MVRYRGPRLKIIKKLG LPGLTRK+I K              SK+SAYKIRLNEKQKLRYNYGITESQLLTYVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGL PTIPA RQFV+HGHVL+NKKKVNIPSFQC+PNDI+SFSSKSK  NLLK NLSQ++   D VSTSHL FD+QSLTAKI  LV +KDL FKINDMLVIEYYSRLA
Sbjct:    1 MVRYRGPRLKIIKKLGQLPGLTRKIIIKXXXXXXXXXXXXXXSKSSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLVPTIPAGRQFVSHGHVLVNKKKVNIPSFQCRPNDIISFSSKSKITNLLKTNLSQINYITDNVSTSHLKFDQQSLTAKINRLVTQKDLSFKINDMLVIEYYSRLA 208          
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A8F0FB40_9PHAE (Ribosomal protein S4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB40_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 1.330e-103
Identity = 163/210 (77.62%), Postives = 183/210 (87.14%), Query Frame = 1
Query:    1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQL--SPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
            MVRYRGPRLKIIKK G+LPGLTRK++ KK     K+ ND+K+SK S+YKIRLNEKQKLRYNYG+TESQLL YVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLIN+KKVNIPSFQC+PND+++FS+K KT  LLK+N +    S SN+ +S SHL+FD  SL  KI NLV RKDLRFKINDMLVIEYYSRLA
Sbjct:    1 MVRYRGPRLKIIKKFGELPGLTRKVVVKKQNSSGKDINDQKKSKASSYKIRLNEKQKLRYNYGVTESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINEKKVNIPSFQCRPNDVITFSTKPKTITLLKSNSNHEDNSNSNNDISNSHLEFDYNSLKGKIKNLVKRKDLRFKINDMLVIEYYSRLA 210          
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: D1J700_ECTSI (30S ribosomal protein S4, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J700_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 1.030e-101
Identity = 163/210 (77.62%), Postives = 179/210 (85.24%), Query Frame = 1
Query:    1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSPSN--DKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
            MVRYRGPRLKII +LGDLPGLTRK++       K+ET ++K+SK S YKIRLNEKQKLRYNYGITESQLL YVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFV+HGHV+INKK+VNIPSFQCQPNDI+SFS   KT  L+K NL+Q   SN  D VS SHL+FD Q LT KI NL+ RKDLRFKINDMLVIEYYSRL 
Sbjct:    1 MVRYRGPRLKIINRLGDLPGLTRKVV------IKQETPEQKKSKASPYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCQPNDIISFSKNPKTVTLIKANLNQKENSNPNDNVSNSHLEFDSQLLTGKIVNLIQRKDLRFKINDMLVIEYYSRLV 204          
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A0S0FBJ9_COSCS (30S ribosomal protein S4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0S0FBJ9_COSCS)

HSP 1 Score: 301 bits (770), Expect = 1.800e-101
Identity = 163/210 (77.62%), Postives = 179/210 (85.24%), Query Frame = 1
Query:    1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQ--LSPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
            MVRYRGPRLKIIK+ GDLPGLTRK++ KK     KE  ++K  K SAYKIRLNEKQKLRYNYGITESQLL YVKEARR+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQ VNHGHVL+NKK+VNIPSFQC+PND +SFS K K   LLK+NL+Q   S SND +  SHL+FD++ LT KI NLV RKDLRFKINDMLVIEYYSRLA
Sbjct:    1 MVRYRGPRLKIIKRFGDLPGLTRKVVLKKQGTQGKEATEQKTPKASAYKIRLNEKQKLRYNYGITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLVNKKRVNIPSFQCRPNDSISFSVKPKIMALLKSNLNQGENSTSNDNILNSHLEFDQKLLTGKILNLVKRKDLRFKINDMLVIEYYSRLA 210          
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A6B7EXY2_9PHAE (30S ribosomal protein S4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EXY2_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 1.980e-99
Identity = 157/210 (74.76%), Postives = 182/210 (86.67%), Query Frame = 1
Query:    1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSP--SNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
            MVRYRGPRLKII +LGDLPGLTRK++       K+++ ++K+SK S YKIRLNEKQKLRYNYGITESQLL YVKEA+R+KGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFV+HGHV+INKK+VNIPSFQC+PNDI+SFS+K KT  L+K+NL+Q     +ND +S SHL+FD + LT KI NL+ RKDLRFKINDMLVIEYYSRL 
Sbjct:    1 MVRYRGPRLKIINRLGDLPGLTRKVV------IKQDSKEQKKSKDSPYKIRLNEKQKLRYNYGITESQLLRYVKEAKRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCRPNDIISFSTKPKTVTLIKSNLNQGENLNANDNISNSHLEFDSKLLTGKILNLIQRKDLRFKINDMLVIEYYSRLV 204          
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A8F0F7Q2_9PHAE (Ribosomal protein S4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7Q2_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 7.670e-93
Identity = 155/211 (73.46%), Postives = 178/211 (84.36%), Query Frame = 1
Query:    1 MVRYRGPRLKIIKKLGDLPGLTRK-LIKKKSTGYKKETNDEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSPSN--DKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
            MVRY GPRLKIIK+ G+LPGLT K LI +K     K  ND++++K SAYKIRLNEKQKLRYNYG+TESQLL YVKEARRKKGLTGF+LMQLLEMRLDNIIFRL LAPTIPAARQFV+HGHVLIN KKVNIPSFQCQPND++SFS+K KT +L+K+NL Q    N   ++S SHL+FD++ LT KI NLV R+DL F INDMLVIEYYSRL+
Sbjct:    1 MVRYIGPRLKIIKRFGELPGLTTKILIDEKG----KPPNDKQKTKVSAYKIRLNEKQKLRYNYGVTESQLLRYVKEARRKKGLTGFILMQLLEMRLDNIIFRLKLAPTIPAARQFVSHGHVLINNKKVNIPSFQCQPNDLISFSNKQKTLDLIKSNLRQNKGLNINPELSNSHLEFDQKLLTGKIKNLVKREDLSFNINDMLVIEYYSRLS 207          
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Match: A0A8E5XRG0_9PHAE (30S ribosomal protein S4, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRG0_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 1.190e-84
Identity = 139/216 (64.35%), Postives = 171/216 (79.17%), Query Frame = 1
Query:    1 MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETN---DEKRSKTSAYKIRLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNNLLKNNLSQLSPS-----NDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLVIEYYSRLA 624
            M RYRGPRLKI+++LG+LPGLTRK+I  K+    ++ N    +K  K S +KIRL EKQKLRYNYGI ESQL  YV EARR+KGLTGFLL+QLLEMR+DNII+RLGL PTIPAARQF+ HGHVLINK++VNIPSFQCQPND ++FS++ +   LLK+NL Q + +     N ++S  HL+FD +SLT KI +LVNR D+  +INDMLVIEYYSRLA
Sbjct:    1 MARYRGPRLKIVRRLGELPGLTRKVISTKTERQSQDKNTGLQKKNQKGSTFKIRLCEKQKLRYNYGIAESQLRKYVIEARRRKGLTGFLLLQLLEMRVDNIIYRLGLVPTIPAARQFITHGHVLINKRRVNIPSFQCQPNDFITFSTRPEIIQLLKSNLDQSNSTAETFENKEISNQHLEFDPKSLTVKIKDLVNRNDVSLQINDMLVIEYYSRLA 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20719.5941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ10_9PHAE2.440e-11184.6230S ribosomal protein S4 n=3 Tax=Fucaceae TaxID=30... [more]
A0A8F0JYE9_9PHAE4.860e-10678.57Ribosomal protein S4 n=2 Tax=Laminariales TaxID=28... [more]
A0A8F0F9Q9_9PHAE3.990e-10578.10Ribosomal protein S4 n=1 Tax=Chorda asiatica TaxID... [more]
A0A141BSI8_9PHAE3.050e-10480.2930S ribosomal protein S4, chloroplastic n=15 Tax=S... [more]
A0A8F0FB40_9PHAE1.330e-10377.62Ribosomal protein S4 n=1 Tax=Desmarestia aculeata ... [more]
D1J700_ECTSI1.030e-10177.6230S ribosomal protein S4, chloroplastic n=8 Tax=Ec... [more]
A0A0S0FBJ9_COSCS1.800e-10177.6230S ribosomal protein S4, chloroplastic n=28 Tax=L... [more]
A0A6B7EXY2_9PHAE1.980e-9974.7630S ribosomal protein S4 n=1 Tax=Cladosiphon okamu... [more]
A0A8F0F7Q2_9PHAE7.670e-9373.46Ribosomal protein S4 n=1 Tax=Protohalopteris sp. T... [more]
A0A8E5XRG0_9PHAE1.190e-8464.3530S ribosomal protein S4, chloroplastic n=1 Tax=Is... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20719contigH-elongata_contig20719:4438..5064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.2
Seed ortholog evalue1.2e-80
Seed eggNOG ortholog2880.D1J700
Preferred namerps4
KEGG koko:K02986
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112
EggNOG free text desc.positive regulation of translational fidelity
EggNOG OGsCOG0522@1,KOG3301@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size627
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.9313152-CDS-H-elongata_contig20719:4437..50641622930157.9313152-CDS-H-elongata_contig20719:4437..5064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20719 4438..5064 -
1691679303.2335813-CDS-H-elongata_contig20719:4437..50641691679303.2335813-CDS-H-elongata_contig20719:4437..5064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20719 4438..5064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20719.5941.1prot_H-elongata_contig20719.5941.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20719 4438..5064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20719.5941.1

>prot_H-elongata_contig20719.5941.1 ID=prot_H-elongata_contig20719.5941.1|Name=mRNA_H-elongata_contig20719.5941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
MVRYRGPRLKIIKKLGDLPGLTRKLIKKKSTGYKKETNDEKRSKTSAYKI
RLNEKQKLRYNYGITESQLLTYVKEARRKKGLTGFLLMQLLEMRLDNIIF
RLGLAPTIPAARQFVNHGHVLINKKKVNIPSFQCQPNDILSFSSKSKTNN
LLKNNLSQLSPSNDKVSTSHLDFDKQSLTAKITNLVNRKDLRFKINDMLV
IEYYSRLA*
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mRNA from alignment at H-elongata_contig20719:4438..5064-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20719.5941.1 ID=mRNA_H-elongata_contig20719.5941.1|Name=mRNA_H-elongata_contig20719.5941.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=627bp|location=Sequence derived from alignment at H-elongata_contig20719:4438..5064- (Himanthalia elongata Himel1 dioecious)
ATGGTACGTTATAGAGGACCACGATTAAAAATTATTAAAAAATTAGGTGA TTTACCTGGTTTAACGAGAAAATTAATAAAAAAAAAAAGTACGGGCTACA AAAAAGAAACTAATGATGAAAAAAGATCAAAGACATCAGCGTATAAGATT AGATTAAATGAAAAACAAAAACTACGTTATAACTATGGAATAACTGAATC ACAATTGTTAACTTACGTTAAGGAAGCAAGACGTAAAAAAGGTTTAACAG GTTTTTTATTAATGCAACTTTTGGAAATGCGATTAGATAATATTATTTTT CGTTTAGGTTTAGCACCAACAATACCCGCAGCGCGACAATTTGTTAATCA CGGTCATGTACTAATAAATAAAAAAAAAGTAAACATACCTAGTTTTCAGT GTCAACCTAATGATATCCTTAGTTTTTCTTCAAAATCTAAGACTAACAAT TTATTAAAAAATAATTTAAGTCAATTAAGTCCCTCAAATGATAAGGTTTC CACTAGTCATTTAGACTTTGATAAACAGTCTTTGACTGCTAAAATTACCA ATTTAGTAAATCGTAAAGATCTTAGATTTAAGATAAATGATATGCTTGTA ATTGAATATTATTCTAGGTTAGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig20719:4438..5064-

>mRNA_H-elongata_contig20719.5941.1 ID=mRNA_H-elongata_contig20719.5941.1|Name=mRNA_H-elongata_contig20719.5941.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig20719:4438..5064- (Himanthalia elongata Himel1 dioecious)
ATGGTACGTTATAGAGGACCACGATTAAAAATTATTAAAAAATTAGGTGA
TTTACCTGGTTTAACGAGAAAATTAATAAAAAAAAAAAGTACGGGCTACA
AAAAAGAAACTAATGATGAAAAAAGATCAAAGACATCAGCGTATAAGATT
AGATTAAATGAAAAACAAAAACTACGTTATAACTATGGAATAACTGAATC
ACAATTGTTAACTTACGTTAAGGAAGCAAGACGTAAAAAAGGTTTAACAG
GTTTTTTATTAATGCAACTTTTGGAAATGCGATTAGATAATATTATTTTT
CGTTTAGGTTTAGCACCAACAATACCCGCAGCGCGACAATTTGTTAATCA
CGGTCATGTACTAATAAATAAAAAAAAAGTAAACATACCTAGTTTTCAGT
GTCAACCTAATGATATCCTTAGTTTTTCTTCAAAATCTAAGACTAACAAT
TTATTAAAAAATAATTTAAGTCAATTAAGTCCCTCAAATGATAAGGTTTC
CACTAGTCATTTAGACTTTGATAAACAGTCTTTGACTGCTAAAATTACCA
ATTTAGTAAATCGTAAAGATCTTAGATTTAAGATAAATGATATGCTTGTA
ATTGAATATTATTCTAGGTTAGCTTAAATGGTACGTTATAGAGGACCACG
ATTAAAAATTATTAAAAAATTAGGTGATTTACCTGGTTTAACGAGAAAAT
TAATAAAAAAAAAAAGTACGGGCTACAAAAAAGAAACTAATGATGAAAAA
AGATCAAAGACATCAGCGTATAAGATTAGATTAAATGAAAAACAAAAACT
ACGTTATAACTATGGAATAACTGAATCACAATTGTTAACTTACGTTAAGG
AAGCAAGACGTAAAAAAGGTTTAACAGGTTTTTTATTAATGCAACTTTTG
GAAATGCGATTAGATAATATTATTTTTCGTTTAGGTTTAGCACCAACAAT
ACCCGCAGCGCGACAATTTGTTAATCACGGTCATGTACTAATAAATAAAA
AAAAAGTAAACATACCTAGTTTTCAGTGTCAACCTAATGATATCCTTAGT
TTTTCTTCAAAATCTAAGACTAACAATTTATTAAAAAATAATTTAAGTCA
ATTAAGTCCCTCAAATGATAAGGTTTCCACTAGTCATTTAGACTTTGATA
AACAGTCTTTGACTGCTAAAATTACCAATTTAGTAAATCGTAAAGATCTT
AGATTTAAGATAAATGATATGCTTGTAATTGAATATTATTCTAGGTTAGC
TTAA
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