mRNA_H-elongata_contig20719.5938.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20719.5938.1
Unique NamemRNA_H-elongata_contig20719.5938.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A2R4QPY9_9PHAE (Uncharacterized protein n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY9_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.180e-47
Identity = 78/95 (82.11%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKSENIDD-VKVTVKRLYPFLLI 282
            MNHAFFIVKVVKNPV+L+ KDYE +EIKVEFPVSRQKNSKNEI LLLWGDH+ DFLKYYKVQDYLLIEGII L S N ++ VK+TVKRLYPFLL+
Sbjct:    1 MNHAFFIVKVVKNPVHLMSKDYETVEIKVEFPVSRQKNSKNEIILLLWGDHRTDFLKYYKVQDYLLIEGIITLTSTNNNNQVKITVKRLYPFLLL 95          
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A1L2F1K3_9PHAE (Ycf41 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1K3_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.300e-46
Identity = 74/95 (77.89%), Postives = 87/95 (91.58%), Query Frame = 1
Query:    1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKSENID-DVKVTVKRLYPFLLI 282
            MNHAFFIVKVVK+P++L++KDYE +EIKVEFP SRQKNSKNEI LLLWGDH++DFLKYYKVQDYLLIEGII L + N + +VKVTVK+LYPFLL+
Sbjct:    1 MNHAFFIVKVVKSPIHLMFKDYETIEIKVEFPTSRQKNSKNEILLLLWGDHRDDFLKYYKVQDYLLIEGIITLNATNTNKEVKVTVKKLYPFLLL 95          
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A125QZS1_9PHAE (Ycf41 n=13 Tax=Sargassum TaxID=3015 RepID=A0A125QZS1_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.580e-42
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 1
Query:    1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKSENIDDVKVTVKRLYPFLLI 282
            MNHAFFIVKVVK P++L++KDYE +EIKVEFP  RQKNSKN+I LLLWGDH+ DFLKYYKVQDYLLIEGI+     N   + +TVK+LYPFLL+
Sbjct:    1 MNHAFFIVKVVKPPIHLMFKDYETIEIKVEFPARRQKNSKNDIILLLWGDHREDFLKYYKVQDYLLIEGIVTSNVNN-KKINITVKKLYPFLLV 93          
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A8F0FA42_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FA42_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.950e-39
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS-ENIDD-VKVTVKRLYPFLL 279
            MNHA  +VKV+ NPVYL YK+Y+++EIKVEFPVSRQKNS  E+TLLLW DHQ DF+KYYKVQDYL+IEG + LK  + I++  K+ VKR+YPFLL
Sbjct:    1 MNHAILVVKVISNPVYLTYKEYQVIEIKVEFPVSRQKNSGKELTLLLWSDHQGDFVKYYKVQDYLIIEGTLILKGYKTIENKAKIIVKRIYPFLL 95          
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A6B7EW31_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EW31_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.610e-38
Identity = 62/96 (64.58%), Postives = 80/96 (83.33%), Query Frame = 1
Query:    1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS--ENIDDVKVTVKRLYPFLLI 282
            MNHA F+VKV+  PV+L+YK+YE +EIKV+FPV RQK+S+ E+TLLLWGD++NDFLKYYKVQD+L+IEG + LK      ++ KV VKRLYPFLL+
Sbjct:    1 MNHAIFVVKVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLLV 96          
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A7T8G4B7_SCYLO (Ycf41 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G4B7_SCYLO)

HSP 1 Score: 132 bits (332), Expect = 2.500e-38
Identity = 61/96 (63.54%), Postives = 83/96 (86.46%), Query Frame = 1
Query:    1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS--ENIDDVKVTVKRLYPFLLI 282
            MNHA F+VK+V+ P++L YK+YE +EIKV+FPV RQK+S++E+TLLLWGD++NDFLKYYKVQDYL+I+GI+ LK   +  ++ KV VKR+YPFLL+
Sbjct:    4 MNHAVFVVKLVEKPIHLNYKEYETIEIKVQFPVLRQKDSRSELTLLLWGDYRNDFLKYYKVQDYLIIQGILTLKGYKDRENEPKVIVKRIYPFLLV 99          
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A8F0K099_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K099_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 7.640e-37
Identity = 61/96 (63.54%), Postives = 81/96 (84.38%), Query Frame = 1
Query:    1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS--ENIDDVKVTVKRLYPFLLI 282
            MNHA F+VKV+KNPV+LIY D +I+EIKV+F V +   SKNE+TL+LWG+++++FLKYYKVQDYL+IEGII LK   +  ++V+V VKRLYPFLL+
Sbjct:    1 MNHAIFVVKVIKNPVHLIYNDDQIIEIKVQFSVPQSNTSKNELTLVLWGEYRDNFLKYYKVQDYLIIEGIITLKGYKDEGNEVRVIVKRLYPFLLV 96          
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A0R6LV88_UNDPI (Uncharacterized protein n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A0R6LV88_UNDPI)

HSP 1 Score: 127 bits (319), Expect = 2.190e-36
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS--ENIDDVKVTVKRLYPFLLI 282
            MNHA F+VKV++ PV+LIYK+ + +EIKV+FP+ RQKNSKNE+ LLLWGD++ DF+KYYK QDYL+IEGI+         ++VK+ VK+LYPFLLI
Sbjct:    1 MNHAIFVVKVIEKPVHLIYKECQSMEIKVKFPILRQKNSKNELKLLLWGDYKGDFIKYYKTQDYLIIEGILTSTGYVNEANEVKIIVKKLYPFLLI 96          
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A1I9LVZ4_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVZ4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 4.420e-36
Identity = 61/95 (64.21%), Postives = 81/95 (85.26%), Query Frame = 1
Query:    1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS-ENID-DVKVTVKRLYPFLL 279
            MNH  F+V+VV +PV+LIYK++E ++IKV FPV RQK+SK+E+ LLLWGD++NDFLKYYKVQDYL+IEG + LK  +N++ + KV VKR+YPFLL
Sbjct:    1 MNHTIFVVRVVDDPVHLIYKEHETIQIKVRFPVLRQKDSKSELILLLWGDYRNDFLKYYKVQDYLIIEGTLTLKGYKNMENEPKVIVKRIYPFLL 95          
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A344PFF5_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFF5_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.270e-35
Identity = 61/95 (64.21%), Postives = 81/95 (85.26%), Query Frame = 1
Query:    1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS-ENIDDV-KVTVKRLYPFLL 279
            MNHA F+VKVV  PV+L +K+Y+ +EIKV+FP+ RQK+S++E+TLLLWGD++NDFLKYYKVQDYL+I+G + LK  EN ++  KV VKR+YPFLL
Sbjct:    1 MNHAVFVVKVVDKPVHLNFKEYKTIEIKVQFPILRQKDSRSELTLLLWGDYRNDFLKYYKVQDYLIIQGTLTLKGYENGENKPKVIVKRIYPFLL 95          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QPY9_9PHAE3.180e-4782.11Uncharacterized protein n=3 Tax=Fucaceae TaxID=301... [more]
A0A1L2F1K3_9PHAE1.300e-4677.89Ycf41 n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
A0A125QZS1_9PHAE4.580e-4271.28Ycf41 n=13 Tax=Sargassum TaxID=3015 RepID=A0A125QZ... [more]
A0A8F0FA42_9PHAE3.950e-3967.37Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A6B7EW31_9PHAE1.610e-3864.58Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A7T8G4B7_SCYLO2.500e-3863.54Ycf41 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0... [more]
A0A8F0K099_9PHAE7.640e-3763.54Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]
A0A0R6LV88_UNDPI2.190e-3661.46Uncharacterized protein n=1 Tax=Undaria pinnatifid... [more]
A0A1I9LVZ4_9PHAE4.420e-3664.21Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A344PFF5_9PHAE1.270e-3564.21Uncharacterized protein n=1 Tax=Endarachne bingham... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20719contigH-elongata_contig20719:2..283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog35128.Thapsdraft1403
Preferred nameycf41
EggNOG free text desc.Single-strand binding protein family
EggNOG OGs28S29@1,2QYRN@2759,2XGKS@2836
COG Functional cat.L
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.7759624-CDS-H-elongata_contig20719:1..2831622930157.7759624-CDS-H-elongata_contig20719:1..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20719 2..283 -
1691679303.2002432-CDS-H-elongata_contig20719:1..2831691679303.2002432-CDS-H-elongata_contig20719:1..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20719 2..283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20719.5938.1prot_H-elongata_contig20719.5938.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20719 2..283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20719.5938.1

>prot_H-elongata_contig20719.5938.1 ID=prot_H-elongata_contig20719.5938.1|Name=mRNA_H-elongata_contig20719.5938.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGD
HQNDFLKYYKVQDYLLIEGIIALKSENIDDVKVTVKRLYPFLLI
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mRNA from alignment at H-elongata_contig20719:2..283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20719.5938.1 ID=mRNA_H-elongata_contig20719.5938.1|Name=mRNA_H-elongata_contig20719.5938.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig20719:2..283- (Himanthalia elongata Himel1 dioecious)
ATGAACCACGCTTTTTTCATTGTAAAAGTGGTTAAGAATCCAGTCTATTT AATTTACAAAGATTATGAAATTCTTGAAATAAAGGTAGAATTTCCAGTTT CACGTCAAAAAAACTCAAAAAATGAAATCACACTTTTACTTTGGGGTGAT CATCAAAATGATTTTTTAAAATATTATAAAGTGCAAGATTATTTACTAAT TGAGGGTATTATTGCATTAAAAAGTGAAAATATTGATGATGTAAAAGTAA CTGTTAAACGACTTTATCCATTTCTACTAATT
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Coding sequence (CDS) from alignment at H-elongata_contig20719:2..283-

>mRNA_H-elongata_contig20719.5938.1 ID=mRNA_H-elongata_contig20719.5938.1|Name=mRNA_H-elongata_contig20719.5938.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig20719:2..283- (Himanthalia elongata Himel1 dioecious)
ATGAACCACGCTTTTTTCATTGTAAAAGTGGTTAAGAATCCAGTCTATTT
AATTTACAAAGATTATGAAATTCTTGAAATAAAGGTAGAATTTCCAGTTT
CACGTCAAAAAAACTCAAAAAATGAAATCACACTTTTACTTTGGGGTGAT
CATCAAAATGATTTTTTAAAATATTATAAAGTGCAAGATTATTTACTAAT
TGAGGGTATTATTGCATTAAAAAGTGAAAATATTGATGATGTAAAAGTAA
CTGTTAAACGACTTTATCCATTTCTACTAATTATGAACCACGCTTTTTTC
ATTGTAAAAGTGGTTAAGAATCCAGTCTATTTAATTTACAAAGATTATGA
AATTCTTGAAATAAAGGTAGAATTTCCAGTTTCACGTCAAAAAAACTCAA
AAAATGAAATCACACTTTTACTTTGGGGTGATCATCAAAATGATTTTTTA
AAATATTATAAAGTGCAAGATTATTTACTAATTGAGGGTATTATTGCATT
AAAAAGTGAAAATATTGATGATGTAAAAGTAACTGTTAAACGACTTTATC
CATTTCTACTAATT
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