mRNA_H-elongata_contig20719.5938.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A2R4QPY9_9PHAE (Uncharacterized protein n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY9_9PHAE) HSP 1 Score: 154 bits (390), Expect = 3.180e-47 Identity = 78/95 (82.11%), Postives = 86/95 (90.53%), Query Frame = 1
Query: 1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKSENIDD-VKVTVKRLYPFLLI 282
MNHAFFIVKVVKNPV+L+ KDYE +EIKVEFPVSRQKNSKNEI LLLWGDH+ DFLKYYKVQDYLLIEGII L S N ++ VK+TVKRLYPFLL+
Sbjct: 1 MNHAFFIVKVVKNPVHLMSKDYETVEIKVEFPVSRQKNSKNEIILLLWGDHRTDFLKYYKVQDYLLIEGIITLTSTNNNNQVKITVKRLYPFLLL 95
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A1L2F1K3_9PHAE (Ycf41 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1K3_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.300e-46 Identity = 74/95 (77.89%), Postives = 87/95 (91.58%), Query Frame = 1
Query: 1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKSENID-DVKVTVKRLYPFLLI 282
MNHAFFIVKVVK+P++L++KDYE +EIKVEFP SRQKNSKNEI LLLWGDH++DFLKYYKVQDYLLIEGII L + N + +VKVTVK+LYPFLL+
Sbjct: 1 MNHAFFIVKVVKSPIHLMFKDYETIEIKVEFPTSRQKNSKNEILLLLWGDHRDDFLKYYKVQDYLLIEGIITLNATNTNKEVKVTVKKLYPFLLL 95
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A125QZS1_9PHAE (Ycf41 n=13 Tax=Sargassum TaxID=3015 RepID=A0A125QZS1_9PHAE) HSP 1 Score: 141 bits (356), Expect = 4.580e-42 Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 1
Query: 1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKSENIDDVKVTVKRLYPFLLI 282
MNHAFFIVKVVK P++L++KDYE +EIKVEFP RQKNSKN+I LLLWGDH+ DFLKYYKVQDYLLIEGI+ N + +TVK+LYPFLL+
Sbjct: 1 MNHAFFIVKVVKPPIHLMFKDYETIEIKVEFPARRQKNSKNDIILLLWGDHREDFLKYYKVQDYLLIEGIVTSNVNN-KKINITVKKLYPFLLV 93
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A8F0FA42_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FA42_9PHAE) HSP 1 Score: 134 bits (337), Expect = 3.950e-39 Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 1
Query: 1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS-ENIDD-VKVTVKRLYPFLL 279
MNHA +VKV+ NPVYL YK+Y+++EIKVEFPVSRQKNS E+TLLLW DHQ DF+KYYKVQDYL+IEG + LK + I++ K+ VKR+YPFLL
Sbjct: 1 MNHAILVVKVISNPVYLTYKEYQVIEIKVEFPVSRQKNSGKELTLLLWSDHQGDFVKYYKVQDYLIIEGTLILKGYKTIENKAKIIVKRIYPFLL 95
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A6B7EW31_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EW31_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.610e-38 Identity = 62/96 (64.58%), Postives = 80/96 (83.33%), Query Frame = 1
Query: 1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS--ENIDDVKVTVKRLYPFLLI 282
MNHA F+VKV+ PV+L+YK+YE +EIKV+FPV RQK+S+ E+TLLLWGD++NDFLKYYKVQD+L+IEG + LK ++ KV VKRLYPFLL+
Sbjct: 1 MNHAIFVVKVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLLV 96
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A7T8G4B7_SCYLO (Ycf41 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G4B7_SCYLO) HSP 1 Score: 132 bits (332), Expect = 2.500e-38 Identity = 61/96 (63.54%), Postives = 83/96 (86.46%), Query Frame = 1
Query: 1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS--ENIDDVKVTVKRLYPFLLI 282
MNHA F+VK+V+ P++L YK+YE +EIKV+FPV RQK+S++E+TLLLWGD++NDFLKYYKVQDYL+I+GI+ LK + ++ KV VKR+YPFLL+
Sbjct: 4 MNHAVFVVKLVEKPIHLNYKEYETIEIKVQFPVLRQKDSRSELTLLLWGDYRNDFLKYYKVQDYLIIQGILTLKGYKDRENEPKVIVKRIYPFLLV 99
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A8F0K099_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K099_9PHAE) HSP 1 Score: 128 bits (322), Expect = 7.640e-37 Identity = 61/96 (63.54%), Postives = 81/96 (84.38%), Query Frame = 1
Query: 1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS--ENIDDVKVTVKRLYPFLLI 282
MNHA F+VKV+KNPV+LIY D +I+EIKV+F V + SKNE+TL+LWG+++++FLKYYKVQDYL+IEGII LK + ++V+V VKRLYPFLL+
Sbjct: 1 MNHAIFVVKVIKNPVHLIYNDDQIIEIKVQFSVPQSNTSKNELTLVLWGEYRDNFLKYYKVQDYLIIEGIITLKGYKDEGNEVRVIVKRLYPFLLV 96
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A0R6LV88_UNDPI (Uncharacterized protein n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A0R6LV88_UNDPI) HSP 1 Score: 127 bits (319), Expect = 2.190e-36 Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 1
Query: 1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS--ENIDDVKVTVKRLYPFLLI 282
MNHA F+VKV++ PV+LIYK+ + +EIKV+FP+ RQKNSKNE+ LLLWGD++ DF+KYYK QDYL+IEGI+ ++VK+ VK+LYPFLLI
Sbjct: 1 MNHAIFVVKVIEKPVHLIYKECQSMEIKVKFPILRQKNSKNELKLLLWGDYKGDFIKYYKTQDYLIIEGILTSTGYVNEANEVKIIVKKLYPFLLI 96
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A1I9LVZ4_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVZ4_9PHAE) HSP 1 Score: 126 bits (317), Expect = 4.420e-36 Identity = 61/95 (64.21%), Postives = 81/95 (85.26%), Query Frame = 1
Query: 1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS-ENID-DVKVTVKRLYPFLL 279
MNH F+V+VV +PV+LIYK++E ++IKV FPV RQK+SK+E+ LLLWGD++NDFLKYYKVQDYL+IEG + LK +N++ + KV VKR+YPFLL
Sbjct: 1 MNHTIFVVRVVDDPVHLIYKEHETIQIKVRFPVLRQKDSKSELILLLWGDYRNDFLKYYKVQDYLIIEGTLTLKGYKNMENEPKVIVKRIYPFLL 95
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Match: A0A344PFF5_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFF5_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.270e-35 Identity = 61/95 (64.21%), Postives = 81/95 (85.26%), Query Frame = 1
Query: 1 MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDHQNDFLKYYKVQDYLLIEGIIALKS-ENIDDV-KVTVKRLYPFLL 279
MNHA F+VKVV PV+L +K+Y+ +EIKV+FP+ RQK+S++E+TLLLWGD++NDFLKYYKVQDYL+I+G + LK EN ++ KV VKR+YPFLL
Sbjct: 1 MNHAVFVVKVVDKPVHLNFKEYKTIEIKVQFPILRQKDSRSELTLLLWGDYRNDFLKYYKVQDYLIIQGTLTLKGYENGENKPKVIVKRIYPFLL 95 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20719.5938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20719.5938.1 >prot_H-elongata_contig20719.5938.1 ID=prot_H-elongata_contig20719.5938.1|Name=mRNA_H-elongata_contig20719.5938.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp MNHAFFIVKVVKNPVYLIYKDYEILEIKVEFPVSRQKNSKNEITLLLWGDback to top mRNA from alignment at H-elongata_contig20719:2..283- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20719.5938.1 ID=mRNA_H-elongata_contig20719.5938.1|Name=mRNA_H-elongata_contig20719.5938.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig20719:2..283- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20719:2..283- >mRNA_H-elongata_contig20719.5938.1 ID=mRNA_H-elongata_contig20719.5938.1|Name=mRNA_H-elongata_contig20719.5938.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig20719:2..283- (Himanthalia elongata Himel1 dioecious)back to top |