mRNA_H-elongata_contig207142.5937.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207142.5937.1
Unique NamemRNA_H-elongata_contig207142.5937.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207142.5937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207142contigH-elongata_contig207142:2..398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size397
Cds size390
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.705054-UTR-H-elongata_contig207142:1..81622930157.705054-UTR-H-elongata_contig207142:1..8Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207142 2..8 +
1691679303.1844578-UTR-H-elongata_contig207142:1..81691679303.1844578-UTR-H-elongata_contig207142:1..8Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207142 2..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.7197921-CDS-H-elongata_contig207142:8..3981622930157.7197921-CDS-H-elongata_contig207142:8..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207142 9..398 +
1691679303.1919737-CDS-H-elongata_contig207142:8..3981691679303.1919737-CDS-H-elongata_contig207142:8..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207142 9..398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207142.5937.1prot_H-elongata_contig207142.5937.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207142 9..398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207142.5937.1

>prot_H-elongata_contig207142.5937.1 ID=prot_H-elongata_contig207142.5937.1|Name=mRNA_H-elongata_contig207142.5937.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MTPWVWFIRLPWMHDREWTAVRRYLHPVPWSLPPSASALSCKPRHRARLS
RNRAGSIVSNPSLDLLLAGPHQSNQDPLVGVNLGPGGSAEAAAAFGHLVY
PGHEVFTHHLNLGLLHCSKSTSRDNTRHG*
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mRNA from alignment at H-elongata_contig207142:2..398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207142.5937.1 ID=mRNA_H-elongata_contig207142.5937.1|Name=mRNA_H-elongata_contig207142.5937.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=397bp|location=Sequence derived from alignment at H-elongata_contig207142:2..398+ (Himanthalia elongata Himel1 dioecious)
GTGGAGCATGACGCCGTGGGTGTGGTTCATCAGACTCCCGTGGATGCACG
ACAGAGAGTGGACTGCCGTCAGGCGTTATTTGCACCCGGTACCTTGGTCC
TTACCTCCTAGCGCTTCGGCGTTATCGTGTAAGCCCAGGCACCGAGCGAG
GCTCTCCCGGAACAGGGCGGGCTCCATCGTGTCCAACCCAAGCTTGGACC
TCCTTCTCGCGGGCCCCCATCAGTCGAATCAGGATCCGCTGGTAGGGGTC
AACCTCGGCCCGGGCGGCAGCGCCGAAGCCGCGGCGGCGTTTGGCCATCT
TGTGTACCCGGGCCATGAGGTGTTCACCCACCACCTTAACTTGGGCCTTT
TGCACTGTTCCAAAAGTACGAGCCGTGACAACACAAGACATGGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig207142:2..398+

>mRNA_H-elongata_contig207142.5937.1 ID=mRNA_H-elongata_contig207142.5937.1|Name=mRNA_H-elongata_contig207142.5937.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig207142:2..398+ (Himanthalia elongata Himel1 dioecious)
ATGACGCCGTGGGTGTGGTTCATCAGACTCCCGTGGATGCACGACAGAGA
GTGGACTGCCGTCAGGCGTTATTTGCACCCGGTACCTTGGTCCTTACCTC
CTAGCGCTTCGGCGTTATCGTGTAAGCCCAGGCACCGAGCGAGGCTCTCC
CGGAACAGGGCGGGCTCCATCGTGTCCAACCCAAGCTTGGACCTCCTTCT
CGCGGGCCCCCATCAGTCGAATCAGGATCCGCTGGTAGGGGTCAACCTCG
GCCCGGGCGGCAGCGCCGAAGCCGCGGCGGCGTTTGGCCATCTTGTGTAC
CCGGGCCATGAGGTGTTCACCCACCACCTTAACTTGGGCCTTTTGCACTG
TTCCAAAAGTACGAGCCGTGACAACACAAGACATGGCTAAATGACGCCGT
GGGTGTGGTTCATCAGACTCCCGTGGATGCACGACAGAGAGTGGACTGCC
GTCAGGCGTTATTTGCACCCGGTACCTTGGTCCTTACCTCCTAGCGCTTC
GGCGTTATCGTGTAAGCCCAGGCACCGAGCGAGGCTCTCCCGGAACAGGG
CGGGCTCCATCGTGTCCAACCCAAGCTTGGACCTCCTTCTCGCGGGCCCC
CATCAGTCGAATCAGGATCCGCTGGTAGGGGTCAACCTCGGCCCGGGCGG
CAGCGCCGAAGCCGCGGCGGCGTTTGGCCATCTTGTGTACCCGGGCCATG
AGGTGTTCACCCACCACCTTAACTTGGGCCTTTTGCACTGTTCCAAAAGT
ACGAGCCGTGACAACACAAGACATGGCTAA
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