mRNA_H-elongata_contig207141.5936.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207141.5936.1
Unique NamemRNA_H-elongata_contig207141.5936.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207141.5936.1 vs. uniprot
Match: D8LEY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEY4_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.480e-12
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 MAQFLIRIINHFATEVIAKRLANSRTFQQFALKTHENV 114
            MAQFLI+I+NHFA+E+I KRLANSR FQQFA+KTH  V
Sbjct:    1 MAQFLIKIVNHFASEIITKRLANSRAFQQFAMKTHLKV 38
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BLAST of mRNA_H-elongata_contig207141.5936.1 vs. uniprot
Match: A0A7S1BLH8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLH8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.430e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 MAQFLIRIINHFATEVIAKRLANSRTFQQFALKTHENVSDL 123
            M QF+ R+ N+ A EV+ K LANSRTFQ+FAL+THEN+  L
Sbjct:    1 MNQFIQRVANYIANEVLIKGLANSRTFQRFALRTHENIQAL 41
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BLAST of mRNA_H-elongata_contig207141.5936.1 vs. uniprot
Match: A0A836CNG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.970e-7
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 MAQFLIRIINHFATEVIAKRLANSRTFQQFALKTHENV 114
            M     +IINHFA+E+I KRLA S+TFQ  ALKTH++V
Sbjct:    1 MNALFTKIINHFASEMITKRLAQSKTFQDMALKTHQHV 38
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BLAST of mRNA_H-elongata_contig207141.5936.1 vs. uniprot
Match: A0A8J9TB58_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TB58_PHATR)

HSP 1 Score: 49.3 bits (116), Expect = 7.480e-7
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 MAQFLIRIINHFATEVIAKRLANSRTFQQFALKTHENVSDL 123
            M+QF+ R+ N+ A EV+ K LANS+TFQ+FA++T  N+ +L
Sbjct:    1 MSQFIQRVANYIANEVLIKGLANSKTFQRFAIRTDHNLQNL 41
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BLAST of mRNA_H-elongata_contig207141.5936.1 vs. uniprot
Match: A0A6U6IHD6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IHD6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 7.170e-6
Identity = 20/41 (48.78%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 MAQFLIRIINHFATEVIAKRLANSRTFQQFALKTHENVSDL 123
            M QF+ R+ N+ A EV+ K LANSRTFQ+FA++T ++++++
Sbjct:    1 MNQFIQRVANYIANEVLIKGLANSRTFQRFAVRTDKHITEM 41
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BLAST of mRNA_H-elongata_contig207141.5936.1 vs. uniprot
Match: A0A448Z997_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z997_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.410e-5
Identity = 20/39 (51.28%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    7 QFLIRIINHFATEVIAKRLANSRTFQQFALKTHENVSDL 123
            QF+ R++N+ A E+I K LANSRTFQ+FA++T++   +L
Sbjct:   75 QFIQRVVNYVANEIIVKGLANSRTFQRFAVRTNQQYEEL 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207141.5936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LEY4_ECTSI4.480e-1276.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1BLH8_9STRA1.430e-860.98Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A836CNG9_9STRA4.970e-760.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J9TB58_PHATR7.480e-751.22Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A6U6IHD6_9STRA7.170e-648.78Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A448Z997_9STRA1.410e-551.28Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207141contigH-elongata_contig207141:71..193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006020.1
Exons1
Model size123
Cds size123
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.630103-CDS-H-elongata_contig207141:70..1931622930157.630103-CDS-H-elongata_contig207141:70..193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207141 71..193 +
1691679303.1767097-CDS-H-elongata_contig207141:70..1931691679303.1767097-CDS-H-elongata_contig207141:70..193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207141 71..193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207141.5936.1prot_H-elongata_contig207141.5936.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207141 71..193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207141.5936.1

>prot_H-elongata_contig207141.5936.1 ID=prot_H-elongata_contig207141.5936.1|Name=mRNA_H-elongata_contig207141.5936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MAQFLIRIINHFATEVIAKRLANSRTFQQFALKTHENVSDL
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mRNA from alignment at H-elongata_contig207141:71..193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207141.5936.1 ID=mRNA_H-elongata_contig207141.5936.1|Name=mRNA_H-elongata_contig207141.5936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig207141:71..193+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCAGTTTCTCATCCGCATAATCAACCACTTCGCGACAGAGGTCAT
CGCGAAGCGATTAGCGAACTCGCGCACATTTCAGCAATTTGCGCTCAAGA
CACACGAGAATGTAAGCGACCTA
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Coding sequence (CDS) from alignment at H-elongata_contig207141:71..193+

>mRNA_H-elongata_contig207141.5936.1 ID=mRNA_H-elongata_contig207141.5936.1|Name=mRNA_H-elongata_contig207141.5936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig207141:71..193+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCAGTTTCTCATCCGCATAATCAACCACTTCGCGACAGAGGTCAT
CGCGAAGCGATTAGCGAACTCGCGCACATTTCAGCAATTTGCGCTCAAGA
CACACGAGAATGTAAGCGACCTAATGGCCCAGTTTCTCATCCGCATAATC
AACCACTTCGCGACAGAGGTCATCGCGAAGCGATTAGCGAACTCGCGCAC
ATTTCAGCAATTTGCGCTCAAGACACACGAGAATGTAAGCGACCTA
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