mRNA_H-elongata_contig20714.5935.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20714.5935.1
Unique NamemRNA_H-elongata_contig20714.5935.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Match: D8LMH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMH1_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 3.920e-132
Identity = 231/471 (49.04%), Postives = 294/471 (62.42%), Query Frame = 1 
Query:   16 ASDTQGNLPTIAVKLNDKTRVGDDYQATIVPRLRPRTAEAMEEDIKVAPREKHLIWDSSCVPDVRRFDELVKRLKIGEMKEGTRRPVSLLTHADVMAAVHRCNYDITSAENSLVSLQRLRESRYKIAVASANRSIVKESFTRPAVRTISSPSGTKICNKIVSRVQS---GGPPAGSRRSGGDNRWEDWSESDRSAFLTNLGDKRKEVTEMGALYPNKSQNDIIEFYYNWKFHEPDYSRWQSTKRQIDIMLTFPDFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKCLANHRTSEARARAKLFVKQKIVSIEEERRSMAKEEERRHERQALYGYMAQPSAGLSFNTKNGTLVDAGGSGERAKEMAXXXXXXXQEADARAERDLSNRPWEKEELFLLRNAVKEFGQCGWRAIMSSSKYQGLFHMRSLPIVKNMYRLVKDADLRRAKARAKLTARADTK 1419
            A+D+QG   TIAVKL+DKTR+GD YQA  +P LR RTAEA +ED+K+AP + HL+WDSS  PD RR  +LVKRL+IG  ++   RP SLLTHADV+AA+HRC YD  SAE SLV LQR RE+++K A AS +   ++ S    +    +SP  +    K  +++ S   GG P   +   G NRWEDWSE+DR+ FL +LGDK K++ ++   +  KS  D+IEFYYNWKFHEPDYSRWQ  KRQIDI L                                                             ARAKLFVKQ+IVSIEEERR MA+EEERRHERQALYGY+ Q SAG+    K G     GG+     E         +EA+A+AER+LSNRPW KE+L  L+ AV EFG+ GWRA+M++ K++ LFHMRS  IVK+M+R++KD +L+RAKARA++ ARADTK
Sbjct:   56 ATDSQGEASTIAVKLHDKTRIGDSYQAVTIPGLRARTAEAKQEDLKIAPEKDHLLWDSSRAPDERRLQQLVKRLRIGSGRDDGGRPTSLLTHADVVAALHRCKYDPASAEASLVGLQRRRETKHKSASASGDARKLQHSRGDVSAEAATSPEDSATAQKSSNQISSIAPGGEPCTGKSDVGGNRWEDWSEADRATFLVHLGDKHKDMNDVAEEFATKSHGDVIEFYYNWKFHEPDYSRWQLMKRQIDIAL-------------------------------------------------------------ARAKLFVKQRIVSIEEERRCMAQEEERRHERQALYGYLGQASAGIEHGHKRG-----GGASASNAENRRQRIMGHEEAEAQAERELSNRPWAKEDLAQLQRAVDEFGERGWRAMMANEKHKSLFHMRSPFIVKSMHRMLKDNELKRAKARARMAARADTK 460
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BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Match: A0A4D9CS67_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS67_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.560e-22
Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = 1 
Query:  568 WSESDRSAFLTNLGDKRKEVTEMGALYPNKSQNDIIEFYYNWKFHEPDYSRWQSTKRQIDIMLTFPDFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKCLANHRTSEARARAKLFVKQKIVSIE 984
            WS+ + + F+  + +  K   ++ AL P +S  D++  +Y WK    DY  W++ +    +    PD+H ++C++CE  G+LL CDTC+LAFH+ CL    E+ P  D+SC +C A + T+  R RAK +V+ K+  ++
Sbjct:  168 WSQEEEAVFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWK-QRADYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVP-EDFSCSQCQAQYLTTSERERAKRWVESKVRKVQ 304
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BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Match: W7TMX5_9STRA (Nucleosome-remodeling factor subunit, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMX5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 9.710e-22
Identity = 50/144 (34.72%), Postives = 84/144 (58.33%), Query Frame = 1 
Query:  553 NRWEDWSESDRSAFLTNLGDKRKEVTEMGALYPNKSQNDIIEFYYNWKFHEPDYSRWQSTKRQIDIMLTFPDFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKCLANHRTSEARARAKLFVKQKIVSIE 984
            NR   WS+ + + F+  + +  K   ++ AL P +S  D++  +Y WK    DY  W++ +    +    PD+H ++C++CE  G+LL CDTC+LAFH+ CL    E+ P  D+SC +C A + T+  R RAK +V+ K+  ++
Sbjct:  360 NRRMAWSQEEEALFVEGMNEYDKNFVQIKALLPKRSVQDVVAHFYEWK-QRADYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVP-EDFSCSQCQAQYLTTSERERAKRWVESKVRKVQ 501
[Close]
BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Match: A0A7S1C3G3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3G3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.020e-16
Identity = 45/115 (39.13%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:  568 WSESDRSAFLTNLGDKRKEVTEMGALYPNKSQNDIIEFYYN-WKFHEPDYSRWQSTKRQIDIMLTFPDFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 909
            WS ++ + F   LG   K    +    P+++  + +E++Y  WK   P +S+W   KR +   L   +FH ++C VC  GG+LL CD+CSLAFH+ CL PPL + P  DW+CP+C
Sbjct:   62 WSAAESALFELGLGRYGKFFGLVAMDIPHRTARECVEYFYGVWK-KLPRHSQW---KRGLGRSL---EFHDDVCAVCGSGGDLLCCDSCSLAFHVSCLRPPLFDLPEEDWACPRC 169
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BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Match: A0A7D9J5R6_PARCT (Chromodomain-helicase-DNA-binding 4-like isoform X3 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J5R6_PARCT)

HSP 1 Score: 88.6 bits (218), Expect = 1.230e-15
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:  766 DFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 909
            D HQ+ CEVCEE GELLLCDTC+L+FHL CL PPL+E P  +WSCPKC
Sbjct:  291 DQHQDYCEVCEESGELLLCDTCTLSFHLQCLDPPLDEAPEGEWSCPKC 338
[Close]
BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Match: A0A6S7JFV3_PARCT (Chromodomain-helicase-DNA-binding 4-like isoform X3 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JFV3_PARCT)

HSP 1 Score: 88.6 bits (218), Expect = 6.600e-15
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:  766 DFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 909
            D HQ+ CEVCEE GELLLCDTC+L+FHL CL PPL+E P  +WSCPKC
Sbjct:   28 DQHQDYCEVCEESGELLLCDTCTLSFHLQCLDPPLDEAPEGEWSCPKC 75
[Close]
BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Match: UPI001F044032 (LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 4-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F044032)

HSP 1 Score: 89.0 bits (219), Expect = 6.760e-15
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  772 HQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 909
            HQ+ CEVCEE GELLLCDTCSL++HLHCL PPL+E P   WSCPKC
Sbjct:  309 HQDYCEVCEESGELLLCDTCSLSYHLHCLDPPLDEAPQGIWSCPKC 354
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BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Match: UPI00106CCECF (chromodomain-helicase-DNA-binding protein 4-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CCECF)

HSP 1 Score: 88.6 bits (218), Expect = 9.050e-15
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:  766 DFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 909
            D HQ+ CEVCEE GELLLCDTC+L+FHL CL PPL+E P  +WSCPKC
Sbjct:  306 DQHQDYCEVCEESGELLLCDTCTLSFHLQCLDPPLDEAPEGEWSCPKC 353
[Close]
BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Match: UPI000852357D (chromodomain-helicase-DNA-binding protein Mi-2 homolog n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=UPI000852357D)

HSP 1 Score: 79.0 bits (193), Expect = 1.590e-14
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  766 DFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKC 909
            D H E C VC++GGELL CD+C+ A+H HCL+PPL E P +DW CP+C
Sbjct:   27 DEHMEFCRVCKDGGELLCCDSCTSAYHTHCLNPPLSEIPDDDWKCPRC 74
[Close]
BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Match: A0A0B7C4I4_9EUPU (PHD-type domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7C4I4_9EUPU)

HSP 1 Score: 79.0 bits (193), Expect = 1.880e-14
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  766 DFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSCPKCLAN-----HRTSEARARAKLFVKQKIVSIEEERRSMAK 1008
            D H + C  C +GG+LL+C+TC L +HL CL+PPL E P   WSCPKCL +     H  SEA A+   ++ +K    +E ++   K
Sbjct:    1 DNHDDYCAACGKGGQLLMCETCRLVYHLDCLNPPLTEAPKYAWSCPKCLISGKGIAHLNSEALAKVHSYIVKKTAKEDERKKVQRK 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20714.5935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMH1_ECTSI3.920e-13249.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CS67_9STRA2.560e-2234.53Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TMX5_9STRA9.710e-2234.72Nucleosome-remodeling factor subunit, putative n=1... [more]
A0A7S1C3G3_9STRA5.020e-1639.13Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7D9J5R6_PARCT1.230e-1572.92Chromodomain-helicase-DNA-binding 4-like isoform X... [more]
A0A6S7JFV3_PARCT6.600e-1572.92Chromodomain-helicase-DNA-binding 4-like isoform X... [more]
UPI001F0440326.760e-1576.09LOW QUALITY PROTEIN: chromodomain-helicase-DNA-bin... [more]
UPI00106CCECF9.050e-1572.92chromodomain-helicase-DNA-binding protein 4-like n... [more]
UPI000852357D1.590e-1460.42chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
A0A0B7C4I4_9EUPU1.880e-1441.86PHD-type domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20714contigH-elongata_contig20714:268..4435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score83.2
Seed ortholog evalue3.6e-13
Seed eggNOG ortholog126957.SMAR011839-PA
Preferred nameChd3
KEGG koko:K11643
KEGG Pathwayko05165,ko05203,map05165,map05203
GOsGO:0000003,GO:0000118,GO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0007063,GO:0007276,GO:0007283,GO:0008150,GO:0008270,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010639,GO:0010948,GO:0016043,GO:0016462,GO:0016581,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017053,GO:0017111,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0030261,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0034728,GO:0035327,GO:0042623,GO:0042766,GO:0043044,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044877,GO:0045786,GO:0045875,GO:0045892,GO:0045934,GO:0046872,GO:0046914,GO:0048232,GO:0048519,GO:0048523,GO:0048609,GO:0050789,GO:0050794,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051312,GO:0051704,GO:0051726,GO:0051983,GO:0051985,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070013,GO:0070603,GO:0070615,GO:0071103,GO:0071824,GO:0071840,GO:0071922,GO:0071923,GO:0080090,GO:0090545,GO:0090568,GO:0097159,GO:1901363,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1903828,GO:1904949,GO:1905634,GO:2000112,GO:2000113,GO:2001141,GO:2001251
EggNOG free text desc.It is involved in the biological process described with regulation of transcription, DNA-templated
EggNOG OGs38BGB@33154,3B940@33208,3CVFP@33213,41XBZ@6656,COG0553@1,KOG0383@2759
EC3.6.4.12
COG Functional cat.B
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons10
Model size1431
Cds size1431
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20714.5935.1prot_H-elongata_contig20714.5935.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20714 268..4435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.418094-CDS-H-elongata_contig20714:267..4451622930157.418094-CDS-H-elongata_contig20714:267..445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 268..445 -
1691679303.0760508-CDS-H-elongata_contig20714:267..4451691679303.0760508-CDS-H-elongata_contig20714:267..445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 268..445 -
1622930157.4374673-CDS-H-elongata_contig20714:824..10791622930157.4374673-CDS-H-elongata_contig20714:824..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 825..1079 -
1691679303.086235-CDS-H-elongata_contig20714:824..10791691679303.086235-CDS-H-elongata_contig20714:824..1079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 825..1079 -
1622930157.458975-CDS-H-elongata_contig20714:1434..14931622930157.458975-CDS-H-elongata_contig20714:1434..1493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 1435..1493 -
1691679303.0942907-CDS-H-elongata_contig20714:1434..14931691679303.0942907-CDS-H-elongata_contig20714:1434..1493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 1435..1493 -
1622930157.4732409-CDS-H-elongata_contig20714:1753..18071622930157.4732409-CDS-H-elongata_contig20714:1753..1807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 1754..1807 -
1691679303.101668-CDS-H-elongata_contig20714:1753..18071691679303.101668-CDS-H-elongata_contig20714:1753..1807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 1754..1807 -
1622930157.4903316-CDS-H-elongata_contig20714:2206..23351622930157.4903316-CDS-H-elongata_contig20714:2206..2335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 2207..2335 -
1691679303.1090786-CDS-H-elongata_contig20714:2206..23351691679303.1090786-CDS-H-elongata_contig20714:2206..2335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 2207..2335 -
1622930157.506354-CDS-H-elongata_contig20714:2787..29281622930157.506354-CDS-H-elongata_contig20714:2787..2928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 2788..2928 -
1691679303.1166687-CDS-H-elongata_contig20714:2787..29281691679303.1166687-CDS-H-elongata_contig20714:2787..2928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 2788..2928 -
1622930157.5272233-CDS-H-elongata_contig20714:3137..35211622930157.5272233-CDS-H-elongata_contig20714:3137..3521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 3138..3521 -
1691679303.1332638-CDS-H-elongata_contig20714:3137..35211691679303.1332638-CDS-H-elongata_contig20714:3137..3521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 3138..3521 -
1622930157.546839-CDS-H-elongata_contig20714:3662..37251622930157.546839-CDS-H-elongata_contig20714:3662..3725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 3663..3725 -
1691679303.1456378-CDS-H-elongata_contig20714:3662..37251691679303.1456378-CDS-H-elongata_contig20714:3662..3725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 3663..3725 -
1622930157.5627668-CDS-H-elongata_contig20714:3908..39831622930157.5627668-CDS-H-elongata_contig20714:3908..3983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 3909..3983 -
1691679303.15351-CDS-H-elongata_contig20714:3908..39831691679303.15351-CDS-H-elongata_contig20714:3908..3983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 3909..3983 -
1622930157.577552-CDS-H-elongata_contig20714:4342..44351622930157.577552-CDS-H-elongata_contig20714:4342..4435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 4343..4435 -
1691679303.161856-CDS-H-elongata_contig20714:4342..44351691679303.161856-CDS-H-elongata_contig20714:4342..4435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20714 4343..4435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20714.5935.1

>prot_H-elongata_contig20714.5935.1 ID=prot_H-elongata_contig20714.5935.1|Name=mRNA_H-elongata_contig20714.5935.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=477bp
MLQIRASDTQGNLPTIAVKLNDKTRVGDDYQATIVPRLRPRTAEAMEEDI
KVAPREKHLIWDSSCVPDVRRFDELVKRLKIGEMKEGTRRPVSLLTHADV
MAAVHRCNYDITSAENSLVSLQRLRESRYKIAVASANRSIVKESFTRPAV
RTISSPSGTKICNKIVSRVQSGGPPAGSRRSGGDNRWEDWSESDRSAFLT
NLGDKRKEVTEMGALYPNKSQNDIIEFYYNWKFHEPDYSRWQSTKRQIDI
MLTFPDFHQEICEVCEEGGELLLCDTCSLAFHLHCLSPPLEEPPLNDWSC
PKCLANHRTSEARARAKLFVKQKIVSIEEERRSMAKEEERRHERQALYGY
MAQPSAGLSFNTKNGTLVDAGGSGERAKEMAMAMAMARQEADARAERDLS
NRPWEKEELFLLRNAVKEFGQCGWRAIMSSSKYQGLFHMRSLPIVKNMYR
LVKDADLRRAKARAKLTARADTKIRAR
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mRNA from alignment at H-elongata_contig20714:268..4435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20714.5935.1 ID=mRNA_H-elongata_contig20714.5935.1|Name=mRNA_H-elongata_contig20714.5935.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4168bp|location=Sequence derived from alignment at H-elongata_contig20714:268..4435- (Himanthalia elongata Himel1 dioecious)
ATGCTTCAGATTCGAGCGTCTGATACCCAGGGAAACTTGCCGACGATCGC
GGTCAAACTGAACGACAAAACCCGCGTTGGTGATGACTACCAGGTATAGT
ATAATATAGTATAGTATAGACTAGCACACTGTACACAAGACATTATATTT
AGGGGCCATGGGACATGTTGTTACCGTGTTGGTTGTTTTCGATGAACCGA
CGGATTGAAAACTGTATTTACCGTTGTTATCGATGACTAATGAACCGAAA
ATTGTCTCTTCAGACTAAGATTGCTTGATAGAGTTGGTTATGGACGAGTA
TAATTAAATTGTACTAGGAGATAAAATGTGCGCAAATGCTCCCGTCTTCA
GTACAAAATACTTCCAAATGTACATGTTAGAATCGATGCAACATTCTCAA
GGTTGCGAAAATTGCGAAAATTCTCCCTTCGCGCTGCTGGTTGATGCCAA
AGGCCACTATTGTTCCAAGATTACGACCTCGCACAGCGGAGGCTATGGAG
GAAGACATCAAAGTAGCGCCGAGAGAGGTACGATGCGGTACCTGATTTTG
GTCAAATCGTGGGGTGGGATGGGGTTCGTGAGACATGATGCACAGAGAAG
CCCGATGTAAGAATTTCCTGGATAACATATCCGCCCACCTCTAGCACCAT
CGCCAGCAGTCACTTCGCTTATACGTGACTTCCCCCTGAAACGTTTCGAC
CGTCAAACAGAAGCACCTTATATGGGATTCATCCTGCGTCCCTGACGTGC
GTCGCTTCGACGAGCTCGTAAAGGTAAGTCTTCGGCTGTTGAAGTGCCAG
AGTTTGATTTACGGAGTGAGAACCAAGCGCGATAGTCGTATGTCTCCGAC
TCTCAGATGCGGGACATAACTTTAAACACTGGCTCGTGTTTTGTGTTCGC
AATTTTTCCCGCAGCGCCTTAAAATCGGCGAGATGAAGGAGGGTACGCGG
AGGCCCGTCAGCCTTCTCACACACGCCGACGTCATGGCCGCTGTGCATCG
CTGCAATTACGATATCACCTCAGCCGAAAATTCGTTGGTATCCCTTCAAC
GGCTCAGGGAGTCACGGTACAAGATTGCCGTTGCCAGCGCCAATCGCAGC
ATCGTCAAAGAATCATTCACTCGGCCTGCTGTTCGGACGATATCATCACC
ATCAGGAACCAAGATTTGCAATAAAATCGTCTCAAGAGTGCAGAGCGGTG
GGCCGCCAGCAGGGTCTCGACGCAGCGGGGGGGACAATCGATGGGAGGAC
TGGAGCGAGTCGGACCGCTCTGCCTTCTTGACGAATTTAGGAGACAAGGT
GTCTTACCCTAGTATATCCCGGCCTCGATACGCTCCCACTCACAGTTCGG
ACGAACCATGTCTAGGGAGGACCAGTTACCATCATATACTATTCGAGAAA
GCAATTAGAGTAAATGTAATTAATAAAGTATTAATAGTAACCTACTTGAA
CAACGACTCTGCTTATATTTTTTATACTCGCGCCCGCCTCCTTCGTGCCT
TCTGCAGCGCAAGGAGGTGACGGAAATGGGGGCACTGTATCCGAACAAGA
GTCAAAACGACATCATCGAGTTTTACTACAATTGGAAATTCCATGAGCCA
GACTACTCTCGCTGGCAAAGTACGAAACGTCAGATCGATATCATGCTTGT
GAGTTATTTGAAATATTTGTGGGTTTTGTTTGCAAAACGACACGACACTG
CACTGCACTGCACTGTGGGTATCCTGAGCCAAATTGTAGTGGTTAGTGCA
ACATTGGCAAGCAAGAGTGGTATTGGGTGTAGACCGGACATTTATTTATG
TGGTGGATAAGTCTAGAAGACACTAGAGTTTTACAGCCCTAGAGCTTTCA
GTGGATGCTACAGCTCTCACTCGACACTCATAATTATTCACTGAAACCAT
CGAGTCAGAGCTTTAGTTAGCCAGGTATGGTATCGTTAAGGCTGCTGTAA
AGGGAGAGATGTGTATAGAGTAGCTTACAAAGAGCAGTGTCAGCTGATGC
TATATATAGTGTACTCTACTCTTGACTCTACACCAAGGATGTACGCCACG
CTCGGATGGCCTGATCGTGTCCCGTACCGTACCGTACCTTACCGTACCAG
ACTTTTCCGGACTTCCATCAAGAGATTTGTGAGGTGTGCGAAGAGGGAGG
AGAGCTTCTGTTGTGCGACACATGCAGTCTGGCCTTCCACTTACACTGCT
TGAGTCCACCCCTGGAAGAACCGCCGTTGGTAAGGTCCTACGTTCCAAAT
TTTACGTAGACCTTTTTTAAAAATTCACAAACCAAAGTCTCACTGTTTCT
GTATGCGACGACCCATCGCTCACAAGTATTTGCGTGGATTGTGAGTTGTG
AAGAAGTCTAAAATATTTGCCGCAAGATTTATCCTCTTGTTCAGTACTGT
ACCGGTACGTAGTTTGAAAATGGAGCGTTGGCATATACTAGTTGTACTGT
ATGTTACGATAATGTACACCAATACAGTTCATACAAAGCAGGGCAAGGTA
ATAATCGCACTCGACTTGCTGTACTGCGTTTGTGGGGATTAAATATACGG
TACTTTATTGCACTAATTATAATGTTGGCACCGATCACCAATCGAGGCTA
CGTGTGTCATGATGTCGTATTTTGACAGAACGACTGGAGCTGCCCGAAGT
GCCTCGCAAACCACCGCACATCAGAGGCCAGGGTGAGGATGAATTGGAGT
ATGAGGTATTTGAGCATACTACAGTATAATGCGCAAGACACACATGTCTG
GCGATCTTACCAGCTTCATGCCAGTGATCTATAACACCCCACCATACACC
ATAGAAATGTGTCGAGGTCTAGGTCGTCATAGACAAGACGAATATAGGCG
CTCCATCCAGTAATTGGGTCATACAGTACTATTTAAATGGTTTTGCCGAC
AAGGCTAATTTGCATTCCTTCCCCGCCCGCTGTGAACACCAGGCAAGAGC
AAAGCTATTCGTGAAGCAGAAGATAGTCTCGATCGAAGAGGAGCGACGAT
CGTAAGAGGATCCACACTAAACATGCATCATATCATATACTTTACGATGT
CTTGTTATGTGGTCATGATGGTGCAACAAACAGGACTGCATGATGGTGCA
ATAGACAGACTCGTATCACATCGGAATCTAAATAATTGCTCCATTCACAT
CCCATTGAAATATTTTTCGTCTCTTAGTGGGACATAAAGCTACCATGTCT
AGTAGGTCTATGAGAAGGTATGTATGTTACAGGCTGTATATTCACCCATC
ATTTGAACAACCTGAAGTAAAACAATGTAGTGCACTCGGCTGTGATTTTT
ATTACACACTCGTATTTCATTTGACCCTTAATCTTGATTCGGTTGAACTG
AGGCAGGATGGCAAAGGAGGAAGAACGGCGGCATGAACGCCAAGCGCTCT
ATGGTTACATGGCACAGCCCAGTGCTGGATTAAGTTTTAACACAAAAAAC
GGTACATTGGTCGACGCCGGTGGTAGTGGCGAACGAGCAAAAGAAATGGC
TATGGCGATGGCAATGGCTAGGCAGGAGGCTGATGCGCGAGCAGAAAGAG
ATCTGAGTAATCGCCCGTGGGAGAAAGAGGAATTATTTCTTCTACGAAAC
GCCGTCAAAGAGTGAGTGAGAGGTTGAAGACGAAGGCTGGGTACGAGGTG
TCCCTTTGATGTATCGTAAGGGCGGCTGTATTCAGTCTCAATGACGATTC
AAAAGCCATCGCAGAAGACGCGACTACTAAAGTTGTGGTTAAAGTGCCTT
GCCAGGTGCACCACTTCCCCTTCCCCTTCCCCGGGCTATGTTGTGCCGTC
GTCATTGTCGTCGTCGCCGCCGCATGGACACTTTTCACTCTATAGTTTAT
AGCTGAACCAATAGCGCGTTGGAGGACGTTTGGATGAATGGTTTAACGTT
TGTAAGACTACAGCTGTATCCATGTATCTCGTGGGCCAAGGCGCAGTTGA
TGTCGCCGGGATGCTTCCCGTTTTAAACTCAAACTTCCAGGTTCGGTCAG
TGCGGCTGGCGCGCGATAATGTCAAGCAGCAAATACCAAGGCCTCTTCCA
CATGCGGAGTCTGCCTATCGTCAAGAATATGTATCGCCTTGTGAAGGATG
CCGACCTCAGGCGAGCCAAGGCTAGAGCGAAGTTGACAGCTCGAGCGGAT
ACCAAAATCAGAGCCCGG
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Coding sequence (CDS) from alignment at H-elongata_contig20714:268..4435-

>mRNA_H-elongata_contig20714.5935.1 ID=mRNA_H-elongata_contig20714.5935.1|Name=mRNA_H-elongata_contig20714.5935.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2862bp|location=Sequence derived from alignment at H-elongata_contig20714:268..4435- (Himanthalia elongata Himel1 dioecious)
ATGCTTCAGATTCGAGCGTCTGATACCCAGGGAAACTTGCCGACGATCGC
GGTCAAACTGAACGACAAAACCCGCGTTGGTGATGACTACCAGATGCTTC
AGATTCGAGCGTCTGATACCCAGGGAAACTTGCCGACGATCGCGGTCAAA
CTGAACGACAAAACCCGCGTTGGTGATGACTACCAGGCCACTATTGTTCC
AAGATTACGACCTCGCACAGCGGAGGCTATGGAGGAAGACATCAAAGTAG
CGCCGAGAGAGGCCACTATTGTTCCAAGATTACGACCTCGCACAGCGGAG
GCTATGGAGGAAGACATCAAAGTAGCGCCGAGAGAGAAGCACCTTATATG
GGATTCATCCTGCGTCCCTGACGTGCGTCGCTTCGACGAGCTCGTAAAGA
AGCACCTTATATGGGATTCATCCTGCGTCCCTGACGTGCGTCGCTTCGAC
GAGCTCGTAAAGCGCCTTAAAATCGGCGAGATGAAGGAGGGTACGCGGAG
GCCCGTCAGCCTTCTCACACACGCCGACGTCATGGCCGCTGTGCATCGCT
GCAATTACGATATCACCTCAGCCGAAAATTCGTTGGTATCCCTTCAACGG
CTCAGGGAGTCACGGTACAAGATTGCCGTTGCCAGCGCCAATCGCAGCAT
CGTCAAAGAATCATTCACTCGGCCTGCTGTTCGGACGATATCATCACCAT
CAGGAACCAAGATTTGCAATAAAATCGTCTCAAGAGTGCAGAGCGGTGGG
CCGCCAGCAGGGTCTCGACGCAGCGGGGGGGACAATCGATGGGAGGACTG
GAGCGAGTCGGACCGCTCTGCCTTCTTGACGAATTTAGGAGACAAGCGCC
TTAAAATCGGCGAGATGAAGGAGGGTACGCGGAGGCCCGTCAGCCTTCTC
ACACACGCCGACGTCATGGCCGCTGTGCATCGCTGCAATTACGATATCAC
CTCAGCCGAAAATTCGTTGGTATCCCTTCAACGGCTCAGGGAGTCACGGT
ACAAGATTGCCGTTGCCAGCGCCAATCGCAGCATCGTCAAAGAATCATTC
ACTCGGCCTGCTGTTCGGACGATATCATCACCATCAGGAACCAAGATTTG
CAATAAAATCGTCTCAAGAGTGCAGAGCGGTGGGCCGCCAGCAGGGTCTC
GACGCAGCGGGGGGGACAATCGATGGGAGGACTGGAGCGAGTCGGACCGC
TCTGCCTTCTTGACGAATTTAGGAGACAAGCGCAAGGAGGTGACGGAAAT
GGGGGCACTGTATCCGAACAAGAGTCAAAACGACATCATCGAGTTTTACT
ACAATTGGAAATTCCATGAGCCAGACTACTCTCGCTGGCAAAGTACGAAA
CGTCAGATCGATATCATGCTTCGCAAGGAGGTGACGGAAATGGGGGCACT
GTATCCGAACAAGAGTCAAAACGACATCATCGAGTTTTACTACAATTGGA
AATTCCATGAGCCAGACTACTCTCGCTGGCAAAGTACGAAACGTCAGATC
GATATCATGCTTACTTTTCCGGACTTCCATCAAGAGATTTGTGAGGTGTG
CGAAGAGGGAGGAGAGCTTCTGTTGTGCGACACATGCAGTCTGGCCTTCC
ACTTACACTGCTTGAGTCCACCCCTGGAAGAACCGCCGTTGACTTTTCCG
GACTTCCATCAAGAGATTTGTGAGGTGTGCGAAGAGGGAGGAGAGCTTCT
GTTGTGCGACACATGCAGTCTGGCCTTCCACTTACACTGCTTGAGTCCAC
CCCTGGAAGAACCGCCGTTGAACGACTGGAGCTGCCCGAAGTGCCTCGCA
AACCACCGCACATCAGAGGCCAGGAACGACTGGAGCTGCCCGAAGTGCCT
CGCAAACCACCGCACATCAGAGGCCAGGGCAAGAGCAAAGCTATTCGTGA
AGCAGAAGATAGTCTCGATCGAAGAGGAGCGACGATCGCAAGAGCAAAGC
TATTCGTGAAGCAGAAGATAGTCTCGATCGAAGAGGAGCGACGATCGATG
GCAAAGGAGGAAGAACGGCGGCATGAACGCCAAGCGCTCTATGGTTACAT
GGCACAGCCCAGTGCTGGATTAAGTTTTAACACAAAAAACGGTACATTGG
TCGACGCCGGTGGTAGTGGCGAACGAGCAAAAGAAATGGCTATGGCGATG
GCAATGGCTAGGCAGGAGGCTGATGCGCGAGCAGAAAGAGATCTGAGTAA
TCGCCCGTGGGAGAAAGAGGAATTATTTCTTCTACGAAACGCCGTCAAAG
AGATGGCAAAGGAGGAAGAACGGCGGCATGAACGCCAAGCGCTCTATGGT
TACATGGCACAGCCCAGTGCTGGATTAAGTTTTAACACAAAAAACGGTAC
ATTGGTCGACGCCGGTGGTAGTGGCGAACGAGCAAAAGAAATGGCTATGG
CGATGGCAATGGCTAGGCAGGAGGCTGATGCGCGAGCAGAAAGAGATCTG
AGTAATCGCCCGTGGGAGAAAGAGGAATTATTTCTTCTACGAAACGCCGT
CAAAGAGTTCGGTCAGTGCGGCTGGCGCGCGATAATGTCAAGCAGCAAAT
ACCAAGGCCTCTTCCACATGCGGAGTCTGCCTATCGTCAAGAATATGTAT
CGCCTTGTGAAGGATGCCGACCTCAGGCGAGCCAAGGCTAGAGCGAAGTT
GACAGCTCGAGCGGATACCAAAATCAGAGCCCGGGTTCGGTCAGTGCGGC
TGGCGCGCGATAATGTCAAGCAGCAAATACCAAGGCCTCTTCCACATGCG
GAGTCTGCCTATCGTCAAGAATATGTATCGCCTTGTGAAGGATGCCGACC
TCAGGCGAGCCAAGGCTAGAGCGAAGTTGACAGCTCGAGCGGATACCAAA
ATCAGAGCCCGG
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