mRNA_H-elongata_contig20711.5934.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A6H5KNT2_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT2_9PHAE) HSP 1 Score: 218 bits (556), Expect = 1.460e-67 Identity = 96/116 (82.76%), Postives = 107/116 (92.24%), Query Frame = 1
Query: 25 QSHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEGR 372
+ HGLILYGQSVGSGPTCYLA+D++KG+ AG+VLHSPILSGMRVLTESRALSCLDIYPNV+R +R+ CPVMVMHG RDEEVPWEHGKG++EAVPE RR WWVPDRGHNDICEGR
Sbjct: 225 KGHGLILYGQSVGSGPTCYLASDKSKGSFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRASRITCPVMVMHGARDEEVPWEHGKGIFEAVPEPLRRRPWWVPDRGHNDICEGR 340
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A7S1H3C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3C4_9STRA) HSP 1 Score: 159 bits (403), Expect = 2.190e-48 Identity = 70/110 (63.64%), Postives = 84/110 (76.36%), Query Frame = 1
Query: 43 LYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEGR 372
LYGQSVGSGP C+L +I GI+LHSP SGMRVLT SR L+CLDI+PN+NRI V+CPVM++HG D+EV HG+ +Y A PE+YRR WWVPDRGHNDI EG+
Sbjct: 1 LYGQSVGSGPVCHLG--HKNNDIGGIILHSPFTSGMRVLTPSRLLACLDIFPNINRIQHVRCPVMIIHGKMDQEVSCSHGEDLYNATPEEYRREPWWVPDRGHNDITEGQ 108
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A6S9I0E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I0E5_HETAK) HSP 1 Score: 162 bits (411), Expect = 3.140e-47 Identity = 71/114 (62.28%), Postives = 89/114 (78.07%), Query Frame = 1
Query: 28 SHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
+ LILYGQSVGSGP+CY A+ AG++LHSP LSGMRV T SRAL+CLDI+PN+ RI +VQCPVMV+HG+ DEEVP HG+G++ AVP +R WWVP++GHN+IC G
Sbjct: 159 AEDLILYGQSVGSGPSCYYASRHAA---AGVILHSPFLSGMRVFTASRALACLDIFPNIKRIQKVQCPVMVIHGLADEEVPCAHGQGLHAAVPRDLQREPWWVPEKGHNNICSG 269
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A7S3VG10_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VG10_9STRA) HSP 1 Score: 164 bits (416), Expect = 2.020e-46 Identity = 75/112 (66.96%), Postives = 91/112 (81.25%), Query Frame = 1
Query: 37 LILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEGR 372
+ILYGQSVGSGP+CYLA + ++ G++LHSP +SGMRVLT SRAL+CLDI+PN+NRI +VQ PVMV+HGM DEEV HG+ ++EAVPE RR WWV DRGHNDI EGR
Sbjct: 319 IILYGQSVGSGPSCYLAA--RRPDVGGLILHSPFMSGMRVLTPSRALACLDIFPNINRIKKVQSPVMVIHGMLDEEVHLSHGQRLHEAVPEDCRRPPWWVKDRGHNDITEGR 428
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A7S2XWH1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWH1_9STRA) HSP 1 Score: 154 bits (388), Expect = 6.120e-46 Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1
Query: 55 SVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEGR 372
SVGSGPTC+LA Q AGIVLHSP +SGMRVLT +R L+CLDIYPN++R+A VQCPV+V+HG D EV W HG ++ +P+K+R WWVP+RGHN+IC+G+
Sbjct: 1 SVGSGPTCWLARKQKT---AGIVLHSPFMSGMRVLTSNRCLACLDIYPNLSRVAEVQCPVLVIHGQEDREVDWSHGVNLWNTIPDKFRVEPWWVPERGHNNICQGQ 103
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: B5Y3S1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3S1_PHATC) HSP 1 Score: 157 bits (398), Expect = 2.420e-45 Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 37 LILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
+ILYGQSVGSGP CYLA T+ ++ G++LHSP SGMRVLT SR LSCLDIYPN++RI +V CPVMV+HG D+EV HG ++ AVPE+ RR WWV DRGHNDI EG
Sbjct: 169 VILYGQSVGSGPCCYLAA--TENDLGGMILHSPFTSGMRVLTPSRLLSCLDIYPNIDRIKKVSCPVMVIHGRLDQEVDVSHGMDIHNAVPEECRRDPWWVSDRGHNDIIEG 277
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A7S1USD1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USD1_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.330e-44 Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 1
Query: 28 SHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
+ ++LYGQSVGSGP+C+LA + + G++LHSP SGMRVLT SR LSCLDIYPN+N+I V+CP MV+HG D+EV + HG+ M+E +PE+YRR WW+ DRGHNDI EG
Sbjct: 269 AKNIVLYGQSVGSGPSCHLAYKNNE--LGGLILHSPFTSGMRVLTPSRLLSCLDIYPNINKIRHVRCPTMVIHGKLDQEVAFHHGREMHENIPEEYRRDPWWIRDRGHNDITEG 380
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A6U3R8T6_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R8T6_9STRA) HSP 1 Score: 159 bits (401), Expect = 1.600e-44 Identity = 67/115 (58.26%), Postives = 90/115 (78.26%), Query Frame = 1
Query: 25 QSHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
+ +++YGQSVGSGP+CY+A + + NI G++LHSP SGMRVLT SRAL+CLDI+PN++RI V CP +V+HGM+DEEV HG+ +YEA+ + +R WWVPDRGHNDI +G
Sbjct: 294 REESIVVYGQSVGSGPSCYIA--KKRQNIGGLILHSPFTSGMRVLTPSRALACLDIFPNIDRIKHVSCPTLVIHGMKDEEVDVAHGRALYEALKDDCKREPWWVPDRGHNDIMDG 406
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A1E7FIN2_9STRA (Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FIN2_9STRA) HSP 1 Score: 155 bits (391), Expect = 3.090e-44 Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 37 LILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
+ILYGQSVGSGP C L+ Q + G++LHSP +SGMRVLT SRAL+CLD+YPN++R+ + +CPVMV+HG DEEV HG M++AVP ++R WWVPDRGHNDI EG
Sbjct: 175 IILYGQSVGSGPCCRLS--QKIEGLGGMILHSPFMSGMRVLTPSRALACLDVYPNIDRVRKTKCPVMVIHGRLDEEVDITHGTSMHQAVPHHFKRDPWWVPDRGHNDITEG 283
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: B8CCP0_THAPS (Hydrolase_4 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCP0_THAPS) HSP 1 Score: 151 bits (382), Expect = 4.200e-44 Identity = 66/117 (56.41%), Postives = 88/117 (75.21%), Query Frame = 1
Query: 19 TLQSHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
T ++LYGQSVGSGP+CYLA+ + ++ G+VLHSP SGMRVLT SRAL+CLDI+PN++RI +V CPV ++HG +D EV EHG+ + AVP+ R WWVP++GHNDI +G
Sbjct: 66 TKSESNVVLYGQSVGSGPSCYLAS--RREHVGGLVLHSPFTSGMRVLTPSRALACLDIFPNIDRIKKVSCPVFIIHGQKDVEVALEHGQALQVAVPDDCRTDPWWVPNKGHNDITDG 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20711.5934.1 >prot_H-elongata_contig20711.5934.1 ID=prot_H-elongata_contig20711.5934.1|Name=mRNA_H-elongata_contig20711.5934.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp MLLLLPTLQSHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMback to top mRNA from alignment at H-elongata_contig20711:5452..6666+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20711.5934.1 ID=mRNA_H-elongata_contig20711.5934.1|Name=mRNA_H-elongata_contig20711.5934.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1215bp|location=Sequence derived from alignment at H-elongata_contig20711:5452..6666+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20711:5452..6666+ >mRNA_H-elongata_contig20711.5934.1 ID=mRNA_H-elongata_contig20711.5934.1|Name=mRNA_H-elongata_contig20711.5934.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig20711:5452..6666+ (Himanthalia elongata Himel1 dioecious)back to top |