mRNA_H-elongata_contig20711.5934.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20711.5934.1
Unique NamemRNA_H-elongata_contig20711.5934.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A6H5KNT2_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT2_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 1.460e-67
Identity = 96/116 (82.76%), Postives = 107/116 (92.24%), Query Frame = 1
Query:   25 QSHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEGR 372
            + HGLILYGQSVGSGPTCYLA+D++KG+ AG+VLHSPILSGMRVLTESRALSCLDIYPNV+R +R+ CPVMVMHG RDEEVPWEHGKG++EAVPE  RR  WWVPDRGHNDICEGR
Sbjct:  225 KGHGLILYGQSVGSGPTCYLASDKSKGSFAGVVLHSPILSGMRVLTESRALSCLDIYPNVDRASRITCPVMVMHGARDEEVPWEHGKGIFEAVPEPLRRRPWWVPDRGHNDICEGR 340          
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A7S1H3C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3C4_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.190e-48
Identity = 70/110 (63.64%), Postives = 84/110 (76.36%), Query Frame = 1
Query:   43 LYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEGR 372
            LYGQSVGSGP C+L       +I GI+LHSP  SGMRVLT SR L+CLDI+PN+NRI  V+CPVM++HG  D+EV   HG+ +Y A PE+YRR  WWVPDRGHNDI EG+
Sbjct:    1 LYGQSVGSGPVCHLG--HKNNDIGGIILHSPFTSGMRVLTPSRLLACLDIFPNINRIQHVRCPVMIIHGKMDQEVSCSHGEDLYNATPEEYRREPWWVPDRGHNDITEGQ 108          
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A6S9I0E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I0E5_HETAK)

HSP 1 Score: 162 bits (411), Expect = 3.140e-47
Identity = 71/114 (62.28%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   28 SHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
            +  LILYGQSVGSGP+CY A+       AG++LHSP LSGMRV T SRAL+CLDI+PN+ RI +VQCPVMV+HG+ DEEVP  HG+G++ AVP   +R  WWVP++GHN+IC G
Sbjct:  159 AEDLILYGQSVGSGPSCYYASRHAA---AGVILHSPFLSGMRVFTASRALACLDIFPNIKRIQKVQCPVMVIHGLADEEVPCAHGQGLHAAVPRDLQREPWWVPEKGHNNICSG 269          
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A7S3VG10_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VG10_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.020e-46
Identity = 75/112 (66.96%), Postives = 91/112 (81.25%), Query Frame = 1
Query:   37 LILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEGR 372
            +ILYGQSVGSGP+CYLA    + ++ G++LHSP +SGMRVLT SRAL+CLDI+PN+NRI +VQ PVMV+HGM DEEV   HG+ ++EAVPE  RR  WWV DRGHNDI EGR
Sbjct:  319 IILYGQSVGSGPSCYLAA--RRPDVGGLILHSPFMSGMRVLTPSRALACLDIFPNINRIKKVQSPVMVIHGMLDEEVHLSHGQRLHEAVPEDCRRPPWWVKDRGHNDITEGR 428          
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A7S2XWH1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWH1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 6.120e-46
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1
Query:   55 SVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEGR 372
            SVGSGPTC+LA  Q     AGIVLHSP +SGMRVLT +R L+CLDIYPN++R+A VQCPV+V+HG  D EV W HG  ++  +P+K+R   WWVP+RGHN+IC+G+
Sbjct:    1 SVGSGPTCWLARKQKT---AGIVLHSPFMSGMRVLTSNRCLACLDIYPNLSRVAEVQCPVLVIHGQEDREVDWSHGVNLWNTIPDKFRVEPWWVPERGHNNICQGQ 103          
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: B5Y3S1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3S1_PHATC)

HSP 1 Score: 157 bits (398), Expect = 2.420e-45
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   37 LILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
            +ILYGQSVGSGP CYLA   T+ ++ G++LHSP  SGMRVLT SR LSCLDIYPN++RI +V CPVMV+HG  D+EV   HG  ++ AVPE+ RR  WWV DRGHNDI EG
Sbjct:  169 VILYGQSVGSGPCCYLAA--TENDLGGMILHSPFTSGMRVLTPSRLLSCLDIYPNIDRIKKVSCPVMVIHGRLDQEVDVSHGMDIHNAVPEECRRDPWWVSDRGHNDIIEG 277          
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A7S1USD1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USD1_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.330e-44
Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 1
Query:   28 SHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
            +  ++LYGQSVGSGP+C+LA    +  + G++LHSP  SGMRVLT SR LSCLDIYPN+N+I  V+CP MV+HG  D+EV + HG+ M+E +PE+YRR  WW+ DRGHNDI EG
Sbjct:  269 AKNIVLYGQSVGSGPSCHLAYKNNE--LGGLILHSPFTSGMRVLTPSRLLSCLDIYPNINKIRHVRCPTMVIHGKLDQEVAFHHGREMHENIPEEYRRDPWWIRDRGHNDITEG 380          
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A6U3R8T6_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R8T6_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.600e-44
Identity = 67/115 (58.26%), Postives = 90/115 (78.26%), Query Frame = 1
Query:   25 QSHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
            +   +++YGQSVGSGP+CY+A  + + NI G++LHSP  SGMRVLT SRAL+CLDI+PN++RI  V CP +V+HGM+DEEV   HG+ +YEA+ +  +R  WWVPDRGHNDI +G
Sbjct:  294 REESIVVYGQSVGSGPSCYIA--KKRQNIGGLILHSPFTSGMRVLTPSRALACLDIFPNIDRIKHVSCPTLVIHGMKDEEVDVAHGRALYEALKDDCKREPWWVPDRGHNDIMDG 406          
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: A0A1E7FIN2_9STRA (Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FIN2_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.090e-44
Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   37 LILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
            +ILYGQSVGSGP C L+  Q    + G++LHSP +SGMRVLT SRAL+CLD+YPN++R+ + +CPVMV+HG  DEEV   HG  M++AVP  ++R  WWVPDRGHNDI EG
Sbjct:  175 IILYGQSVGSGPCCRLS--QKIEGLGGMILHSPFMSGMRVLTPSRALACLDVYPNIDRVRKTKCPVMVIHGRLDEEVDITHGTSMHQAVPHHFKRDPWWVPDRGHNDITEG 283          
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Match: B8CCP0_THAPS (Hydrolase_4 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCP0_THAPS)

HSP 1 Score: 151 bits (382), Expect = 4.200e-44
Identity = 66/117 (56.41%), Postives = 88/117 (75.21%), Query Frame = 1
Query:   19 TLQSHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGMRVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEAVPEKYRRTSWWVPDRGHNDICEG 369
            T     ++LYGQSVGSGP+CYLA+   + ++ G+VLHSP  SGMRVLT SRAL+CLDI+PN++RI +V CPV ++HG +D EV  EHG+ +  AVP+  R   WWVP++GHNDI +G
Sbjct:   66 TKSESNVVLYGQSVGSGPSCYLAS--RREHVGGLVLHSPFTSGMRVLTPSRALACLDIFPNIDRIKKVSCPVFIIHGQKDVEVALEHGQALQVAVPDDCRTDPWWVPNKGHNDITDG 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20711.5934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNT2_9PHAE1.460e-6782.76Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A7S1H3C4_9STRA2.190e-4863.64Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
A0A6S9I0E5_HETAK3.140e-4762.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3VG10_9STRA2.020e-4666.96Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2XWH1_9STRA6.120e-4661.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B5Y3S1_PHATC2.420e-4564.86Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1USD1_9STRA1.330e-4459.65Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6U3R8T6_9STRA1.600e-4458.26Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A1E7FIN2_9STRA3.090e-4461.26Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylind... [more]
B8CCP0_THAPS4.200e-4456.41Hydrolase_4 domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20711contigH-elongata_contig20711:5452..6666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue5.2e-36
Seed eggNOG ortholog2850.Phatr28215
EggNOG free text desc.Serine aminopeptidase, S33
EggNOG OGs2XBWF@2836,COG1073@1,KOG1552@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-28_001050.1
Exons3
Model size372
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20711.5934.1prot_H-elongata_contig20711.5934.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20711 5452..6666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.3254235-CDS-H-elongata_contig20711:5451..55661622930157.3254235-CDS-H-elongata_contig20711:5451..5566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20711 5452..5566 +
1691679303.047267-CDS-H-elongata_contig20711:5451..55661691679303.047267-CDS-H-elongata_contig20711:5451..5566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20711 5452..5566 +
1622930157.3456285-CDS-H-elongata_contig20711:5823..59721622930157.3456285-CDS-H-elongata_contig20711:5823..5972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20711 5824..5972 +
1691679303.0581086-CDS-H-elongata_contig20711:5823..59721691679303.0581086-CDS-H-elongata_contig20711:5823..5972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20711 5824..5972 +
1622930157.370952-CDS-H-elongata_contig20711:6558..66661622930157.370952-CDS-H-elongata_contig20711:6558..6666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20711 6559..6666 +
1691679303.0666497-CDS-H-elongata_contig20711:6558..66661691679303.0666497-CDS-H-elongata_contig20711:6558..6666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20711 6559..6666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20711.5934.1

>prot_H-elongata_contig20711.5934.1 ID=prot_H-elongata_contig20711.5934.1|Name=mRNA_H-elongata_contig20711.5934.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MLLLLPTLQSHGLILYGQSVGSGPTCYLATDQTKGNIAGIVLHSPILSGM
RVLTESRALSCLDIYPNVNRIARVQCPVMVMHGMRDEEVPWEHGKGMYEA
VPEKYRRTSWWVPDRGHNDICEGR
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mRNA from alignment at H-elongata_contig20711:5452..6666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20711.5934.1 ID=mRNA_H-elongata_contig20711.5934.1|Name=mRNA_H-elongata_contig20711.5934.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1215bp|location=Sequence derived from alignment at H-elongata_contig20711:5452..6666+ (Himanthalia elongata Himel1 dioecious)
ATGCTGCTGCTGCTACCAACTTTACAGAGTCACGGACTAATTTTGTACGG CCAGAGCGTGGGGAGTGGTCCGACGTGCTACCTCGCCACGGACCAGACGA AAGGAAATATTGCTGGTGAGGAAGTGCCCTTTGTCTTTTATTTCCTTTCT ATCTATAGTAGGGTTAGGGGGCCGGAGATTACTCTAGTTTTTCCATTACC ATTGACCAGTGGCGGGGCATTGAATCATGTCGCGATTGCGTTGAATCGAT CACAAAGCACGCTCAACATGTGGTGTGCAAATCATGACCCCCCGCCACTT TCCCCGTCCCTTTCCCTCTCCCTTTATTTCTTTCTTTATCTTATATTATT TTCACGCGTGGCGCCATTCCAGGTATTGTGCTCCACAGCCCCATCCTCAG CGGCATGCGAGTCTTGACGGAAAGCAGAGCCCTTTCCTGCCTCGACATAT ACCCCAACGTCAATCGAATTGCGAGGGTTCAATGCCCCGTCATGGTCATG CACGGAATGAGAGACGAAGAGGTGAATGGCAAGGGGATCTGCACGGCGTG TTAAGATGAGGATTACCGTAGCTAGTAGCGGTGGATATAGCATGCTGGGA ATAAGGGGGGATGTGTGGGAAGTGTCCCCGCGCGATTTTTCCCTCAAAAT GAGCTCGACGTGGTTAGTTACTGCCTGGTGCTATGCAGGCGCGAAACGGA AGCTAGAAGTGAGGTAGGGGCGGGGGTAGATAAAGGGTGGATGCGGGAGG GGACCCGCGTCCCCGGGTGTTTTTGTTGGAATATTACCCAACTTTCCCCG AATCGGAGTGTGTCACAGGAGTAGTTGTTTCAATAGTGTGGGTAGTCAAT GCCCTGATTTTCTTACTGTTCGTTGTATTCCGGTTCGCGGTTTCGTGTAT CGATTAATTCGAGATGTTCATTTTATAGAAATATATATAAACGCATCGCC TGCGTGAGGTCTTTTGAAAGCCGGGGGGGGGCTTTTCGAGGAGGCATAAT TCAAAGATTTTGCGACAGGTTCCCATCCCGCGCCCCATCGCGCTCGCTCT TGTGATGTTTTTGGTTTGTTTTTTCCCTTTTATTTATTGGCCCTTGGCGC CCAGCAGGTTCCCTGGGAGCACGGAAAGGGGATGTATGAGGCCGTCCCTG AAAAGTATAGGAGGACTTCTTGGTGGGTGCCGGACAGGGGACACAACGAT ATATGCGAGGGTCGA
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Coding sequence (CDS) from alignment at H-elongata_contig20711:5452..6666+

>mRNA_H-elongata_contig20711.5934.1 ID=mRNA_H-elongata_contig20711.5934.1|Name=mRNA_H-elongata_contig20711.5934.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig20711:5452..6666+ (Himanthalia elongata Himel1 dioecious)
ATGCTGCTGCTGCTACCAACTTTACAGAGTCACGGACTAATTTTGTACGG
CCAGAGCGTGGGGAGTGGTCCGACGTGCTACCTCGCCACGGACCAGACGA
AAGGAAATATTGCTGATGCTGCTGCTGCTACCAACTTTACAGAGTCACGG
ACTAATTTTGTACGGCCAGAGCGTGGGGAGTGGTCCGACGTGCTACCTCG
CCACGGACCAGACGAAAGGAAATATTGCTGGTATTGTGCTCCACAGCCCC
ATCCTCAGCGGCATGCGAGTCTTGACGGAAAGCAGAGCCCTTTCCTGCCT
CGACATATACCCCAACGTCAATCGAATTGCGAGGGTTCAATGCCCCGTCA
TGGTCATGCACGGAATGAGAGACGAAGAGGTATTGTGCTCCACAGCCCCA
TCCTCAGCGGCATGCGAGTCTTGACGGAAAGCAGAGCCCTTTCCTGCCTC
GACATATACCCCAACGTCAATCGAATTGCGAGGGTTCAATGCCCCGTCAT
GGTCATGCACGGAATGAGAGACGAAGAGGTTCCCTGGGAGCACGGAAAGG
GGATGTATGAGGCCGTCCCTGAAAAGTATAGGAGGACTTCTTGGTGGGTG
CCGGACAGGGGACACAACGATATATGCGAGGGTCGAGTTCCCTGGGAGCA
CGGAAAGGGGATGTATGAGGCCGTCCCTGAAAAGTATAGGAGGACTTCTT
GGTGGGTGCCGGACAGGGGACACAACGATATATGCGAGGGTCGA
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