mRNA_H-elongata_contig207021.5928.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207021.5928.1
Unique NamemRNA_H-elongata_contig207021.5928.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Match: D8LIT3_ECTSI (Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIT3_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 2.130e-30
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 AVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQESFLSITR 174
            AVGKSAILLQFTERQFRDAHDMTIGVEFGAKDV IGDAQVKLEIWDTAGQESFLSITR
Sbjct:   15 AVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITR 72
[Close]
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Match: A0A086LH53_TOXGO (Putative Rab2 GTPase n=1 Tax=Toxoplasma gondii FOU TaxID=943167 RepID=A0A086LH53_TOXGO)

HSP 1 Score: 84.7 bits (208), Expect = 7.730e-20
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    4 VGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQESFLSITR 174
            VGKS +LLQFT+++FR  HD+TIGVEFGA+ V I   QVKL+IWDTAGQESF SITR
Sbjct:   47 VGKSCLLLQFTDKRFRTDHDLTIGVEFGARLVSIAGRQVKLQIWDTAGQESFRSITR 103
[Close]
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Match: A0A1R2B5U5_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B5U5_9CILI)

HSP 1 Score: 87.0 bits (214), Expect = 8.160e-20
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 AVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQESFLSITR 174
            AVGKS +LLQFT+R+F++ HD+TIGVEFGA+ V I D  +KL++WDTAGQESF SITR
Sbjct:   17 AVGKSCLLLQFTDRRFKNDHDLTIGVEFGARTVSINDKTIKLQMWDTAGQESFRSITR 74
[Close]
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Match: A0A183MNC7_9TREM (Uncharacterized protein n=1 Tax=Schistosoma margrebowiei TaxID=48269 RepID=A0A183MNC7_9TREM)

HSP 1 Score: 86.7 bits (213), Expect = 1.220e-19
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 AVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQESFLSITR 174
            AVGKS +LLQFT+++F+  +D+TIGVEFGA+ V IGD Q+KL++WDTAGQESF SITR
Sbjct:   16 AVGKSCLLLQFTDQRFQPVYDLTIGVEFGARMVNIGDKQIKLQVWDTAGQESFRSITR 73
[Close]
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Match: G4VQ12_SCHMA (Putative rab-2,4,14 n=4 Tax=Schistosoma TaxID=6181 RepID=G4VQ12_SCHMA)

HSP 1 Score: 86.7 bits (213), Expect = 1.300e-19
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 AVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQESFLSITR 174
            AVGKS +LLQFT+++F+  +D+TIGVEFGA+ V IGD Q+KL++WDTAGQESF SITR
Sbjct:   16 AVGKSCLLLQFTDQRFQPVYDLTIGVEFGARMVNIGDKQIKLQVWDTAGQESFRSITR 73
[Close]
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Match: S4REH2_PETMA (RAB2B, member RAS oncogene family n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4REH2_PETMA)

HSP 1 Score: 86.7 bits (213), Expect = 1.380e-19
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    4 VGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQESFLSITR 174
            VGKS +LLQFT+++F+  HD+TIGVEFGA+ + IG  QVKL+IWDTAGQESF SITR
Sbjct:   22 VGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIAIGGKQVKLQIWDTAGQESFRSITR 78
[Close]
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Match: A0A2D4BNJ8_PYTIN (Rab family, other n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNJ8_PYTIN)

HSP 1 Score: 86.7 bits (213), Expect = 1.410e-19
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    4 VGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQESFLSITR 174
            VGKS++LLQFTE+QF+  HD+TIGVEFGAK + I   +VKLEIWDTAGQE+FLSITR
Sbjct:   16 VGKSSLLLQFTEQQFQPIHDLTIGVEFGAKLIDIDGRKVKLEIWDTAGQETFLSITR 72
[Close]
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Match: C8TE09_EIMTE (Rab2 gtpase, putative n=2 Tax=Eimeria TaxID=5800 RepID=C8TE09_EIMTE)

HSP 1 Score: 83.2 bits (204), Expect = 1.440e-19
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    4 VGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQESFLSITR 174
            VGKS +LLQFT+++FR  HD+TIGVEFGA+ V I   Q+KL+IWDTAGQESF SITR
Sbjct:   18 VGKSCLLLQFTDKRFRVDHDLTIGVEFGARLVSIDGRQIKLQIWDTAGQESFRSITR 74
[Close]
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Match: C1MIT2_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MIT2_MICPC)

HSP 1 Score: 86.3 bits (212), Expect = 1.940e-19
Identity = 39/57 (68.42%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    4 VGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQESFLSITR 174
            VGKS +LLQFT+++F+  HD+TIGVEFG++ V IG+ Q+KL+IWDTAGQESF SITR
Sbjct:   17 VGKSCLLLQFTDKRFQHVHDLTIGVEFGSRLVAIGEKQIKLQIWDTAGQESFRSITR 73
[Close]
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Match: A0A7S3AEM4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AEM4_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 2.040e-19
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    4 VGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQESFLSITR 174
            VGKS +LLQFT+++F+  HD+TIGVEFGA+ + I   Q+KL+IWDTAGQESF SITR
Sbjct:   36 VGKSCLLLQFTDKRFQQVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITR 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207021.5928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIT3_ECTSI2.130e-3098.28Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A086LH53_TOXGO7.730e-2071.93Putative Rab2 GTPase n=1 Tax=Toxoplasma gondii FOU... [more]
A0A1R2B5U5_9CILI8.160e-2068.97Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
A0A183MNC7_9TREM1.220e-1968.97Uncharacterized protein n=1 Tax=Schistosoma margre... [more]
G4VQ12_SCHMA1.300e-1968.97Putative rab-2,4,14 n=4 Tax=Schistosoma TaxID=6181... [more]
S4REH2_PETMA1.380e-1970.18RAB2B, member RAS oncogene family n=2 Tax=Petromyz... [more]
A0A2D4BNJ8_PYTIN1.410e-1973.68Rab family, other n=2 Tax=Pythium insidiosum TaxID... [more]
C8TE09_EIMTE1.440e-1970.18Rab2 gtpase, putative n=2 Tax=Eimeria TaxID=5800 R... [more]
C1MIT2_MICPC1.940e-1968.42Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A7S3AEM4_9EUKA2.040e-1966.67Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207021contigH-elongata_contig207021:129..679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D8LIT3
Preferred nameRab2
KEGG koko:K07877
KEGG Pathwayko04152,map04152
GOsGO:0000139,GO:0000331,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0006970,GO:0008150,GO:0008219,GO:0009628,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0017157,GO:0030587,GO:0031090,GO:0031164,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032879,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045921,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0060627,GO:0065007,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0099120,GO:1903530,GO:1903532
EggNOG free text desc.GTPase activity
EggNOG OGsCOG1100@1,KOG0098@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRab2B, RAB family GTPase
Ec32 orthologEc-20_001420.1
Exons2
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.9606605-CDS-H-elongata_contig207021:128..1851622930156.9606605-CDS-H-elongata_contig207021:128..185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207021 129..185 -
1691679302.9318318-CDS-H-elongata_contig207021:128..1851691679302.9318318-CDS-H-elongata_contig207021:128..185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207021 129..185 -
1622930156.9804258-CDS-H-elongata_contig207021:562..6791622930156.9804258-CDS-H-elongata_contig207021:562..679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207021 563..679 -
1691679302.9418204-CDS-H-elongata_contig207021:562..6791691679302.9418204-CDS-H-elongata_contig207021:562..679Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207021 563..679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207021.5928.1prot_H-elongata_contig207021.5928.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207021 129..679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207021.5928.1

>prot_H-elongata_contig207021.5928.1 ID=prot_H-elongata_contig207021.5928.1|Name=mRNA_H-elongata_contig207021.5928.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
AVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVCIGDAQVKLEIWDTAGQ
ESFLSITR
back to top

mRNA from alignment at H-elongata_contig207021:129..679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207021.5928.1 ID=mRNA_H-elongata_contig207021.5928.1|Name=mRNA_H-elongata_contig207021.5928.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=551bp|location=Sequence derived from alignment at H-elongata_contig207021:129..679- (Himanthalia elongata Himel1 dioecious)
GCGGTGGGCAAGAGCGCGATCCTGTTGCAATTCACGGAGCGGCAGTTCCG
AGATGCCCACGACATGACCATCGGGGTGGAGTTCGGGGCCAAGGATGTAT
GCATAGGGGACGCCCAGGTAGGTAAAATATGTGAGCATATTTAGCCTGTG
TGTATCACACACACACACACACACAAAGTCTGTAGTATAGTATAGTATAG
TATAATATAGTACAGTATAGTATAGTATAGTATAGTCACGCAGCTGAATG
TCTTACAATATTTATTAACGCATCATGACATGTCTGGTTCATCACCATGC
CCTGCCATGCCCTGCCCTGTCCTGCCCTGTTTTTGAGTCCCATCGTCCCA
TTATCGGCCAGGAGTTGGCTTTTCTTTTGCCGAAGGGGTGAGGGTCTCAG
AGAATAGGGGAGAATGAGGCGTTGTGTCGGAGTCAAGGTATCAAAGCATC
CAACTGCGTGCTGCCGTCGTCCCTGCCACGCCCTTCCCCATCAGGTGAAG
CTTGAAATATGGGACACAGCGGGCCAGGAGTCGTTCCTCAGCATCACGAG
G
back to top

Coding sequence (CDS) from alignment at H-elongata_contig207021:129..679-

>mRNA_H-elongata_contig207021.5928.1 ID=mRNA_H-elongata_contig207021.5928.1|Name=mRNA_H-elongata_contig207021.5928.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig207021:129..679- (Himanthalia elongata Himel1 dioecious)
GCGGTGGGCAAGAGCGCGATCCTGTTGCAATTCACGGAGCGGCAGTTCCG
AGATGCCCACGACATGACCATCGGGGTGGAGTTCGGGGCCAAGGATGTAT
GCATAGGGGACGCCCAGGCGGTGGGCAAGAGCGCGATCCTGTTGCAATTC
ACGGAGCGGCAGTTCCGAGATGCCCACGACATGACCATCGGGGTGGAGTT
CGGGGCCAAGGATGTATGCATAGGGGACGCCCAGGTGAAGCTTGAAATAT
GGGACACAGCGGGCCAGGAGTCGTTCCTCAGCATCACGAGGGTGAAGCTT
GAAATATGGGACACAGCGGGCCAGGAGTCGTTCCTCAGCATCACGAGG
back to top