mRNA_H-elongata_contig20681.5922.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20681.5922.1
Unique NamemRNA_H-elongata_contig20681.5922.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Match: D7FTW6_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW6_ECTSI)

HSP 1 Score: 418 bits (1075), Expect = 3.990e-139
Identity = 258/473 (54.55%), Postives = 300/473 (63.42%), Query Frame = 1 
Query:    1 AAAVKDLSHETKTDIVKQAEFYFSDENLFTDAFMKKKIKAGGAQGWIPLKIIASFPKMKKMSKDPKAIGSTLEALSKKLVVQGNRVRRKTPFVFPDKDGMADVASRTVVAVNIPTGSTVESLTGFFSACGVAETVRIIRN----GGQHSKNKE--IQPPMGAQRNFYATCQFSTLEEAIRAVNELTDRSSWRGGLRVMLANGVTVEKALARLKSSGVRKPRQERDARSPARREGISPRPNGHALKGQGAHTPRNGQPRSRSLTELELEAVGAIADTGAAAAVDVVVHQSLHRSTHEDGGSSGDG-------GLDVPHTIARKPRSASNVDTV---STEAGGEGMLHESLLRHNNTSNGDGLPRKGVVQSVSPEGVSWIKRDGNGSRKGGNRIPFWMADVVTKDGQQQQQPYLRKGDQVEYRTWRGNDGKMVAVRVERIKERPRAVMGXXXXXXXXXXLAGQWRTDRATQAHFR 1371
            A  V++L  +TK  +VKQ EFYFSDENL TDAFMKKK+KAGGAQGW+PLK+I SFPK+KKMSKD +AI   LE     +V +  RVRRKTPF FPDKDG ADV SRTVVAVNIP  STVESLT FFS+CGVAE +R+I      G   + N+   IQ P G  R+ YATCQFSTLEEAIRAVNELTDR SWRGGLRV LANGVTVEKALA+LK++  +K +QE+  R            N  +   +G    R+GQ RSRSLTELELE     A  GA++                               G   P T  RKPRS SNVD +   ST   G G+ + S  RH   S GDGLPRKGVVQ++S EG SWIK+DG GSRK GNRIPF M DVV KDG+Q+Q   L+KGD VEYR W+  +G+ +AVRVER KERPR   G                  R+TQAHFR
Sbjct:   81 APPVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKMSKDIRAIALALEDSQALVVAKATRVRRKTPFKFPDKDGRADVTSRTVVAVNIPAESTVESLTPFFSSCGVAELIRVIHKSKTAGTTKTDNRSSGIQAPAGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSLANGVTVEKALAKLKAASNKKAKQEQKQRV-----------NSRSPVDRGQRNVRDGQMRSRSLTELELERTAG-ASGGASSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAAPTT--RKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQP--LQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGGAVGSG------------SRSTQAHFR 525
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BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Match: A0A5J4Y4J7_9CHLO (La-related 7 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y4J7_9CHLO)

HSP 1 Score: 135 bits (339), Expect = 4.070e-32
Identity = 84/213 (39.44%), Postives = 122/213 (57.28%), Query Frame = 1 
Query:   43 IVKQAEFYFSDENLFTDAFMKKKIKAGGAQGWIPLKIIASFPKMKKMSKDPKAIGSTLEALSKKLVVQGNRVRRKTPFVFPDKDGMADVASRTVVAVNIPTGSTVESLTGFFSACGVAETVRIIR-NGGQHSKNKEIQ-PPMGAQRNFYATCQFSTLEEAIRAVNELTDRSSWRGGLRVMLANGVTVEKALARLKSSGVRKPRQERDARSPAR 675
            IVKQ  FYFSD NL TD F+ K+++    +GW+P+++IASF +MK +SKD K I + LE  S +LVV G+RVRRK P    D+    +V  RT +  N+P  +T++SLTG FSA G  + VRI + N G  S  + I    +   R  +A  +F   E+   AV +LTD ++WR GLR  +      ++  A L++     P  ER  ++  R
Sbjct:   52 IVKQVNFYFSDTNLPTDNFLLKEVRKT-PEGWVPIRLIASFKRMKSLSKDIKVIAAALET-STELVVSGHRVRRKEPLPQVDE---TEVLYRTAIVDNLPDQATIDSLTGMFSAAGKVKMVRICQPNSGPRSIAQSIPGADLAVSRQLHALIEFENQEQVAAAVKQLTDSNNWRSGLRAAIEASGESQRPDADLQTDQTETPVSERQGKASGR 259
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BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Match: D8QWC1_SELML (Uncharacterized protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QWC1_SELML)

HSP 1 Score: 122 bits (305), Expect = 4.750e-28
Identity = 74/193 (38.34%), Postives = 112/193 (58.03%), Query Frame = 1 
Query:   19 LSHETKTDIVKQAEFYFSDENLFTDAFMKKKIKAGGAQGWIPLKIIASFPKMKKMSKDPKAIGSTLEALSKKLVVQ-GNRVRRKTPFVFPDKDGMADVASRTVVAVNIPTGSTVESLTGFFSACGVAETVRIIRNGGQHSKN-----KEIQPPMGAQRNFYATCQFSTLEEAIRAVNELTDRSSWRGGLRVML 579
            LS +T+T +V+Q EFYFSD NL TD ++ K IK    +G++P+ II SF K+K+++K+  A+ + L + SK +V + G +VRR  P    D D   ++  RTVVA N+P   +++SL   F   G  + VR+   G  +S N     K  +         +A  ++ TLE+A +AV ELTD+ +WR GL V L
Sbjct:   76 LSEDTRTQVVQQVEFYFSDANLPTDNYLMKFIKKD-PEGFVPIPIIGSFRKIKQLTKNYGALAAALRSSSKLVVSEDGKKVRRAEPLADIDLD---EIQGRTVVAENLPEDHSIQSLEKLFGTIGSVKMVRVCEPGSANSVNSAALAKHSKTDRVVSNKLHALVEYETLEQAEKAVAELTDQRNWRSGLHVRL 264
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BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Match: UPI000D1C965E (la-related protein 6C n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C965E)

HSP 1 Score: 120 bits (300), Expect = 9.360e-26
Identity = 73/193 (37.82%), Postives = 111/193 (57.51%), Query Frame = 1 
Query:   19 LSHETKTDIVKQAEFYFSDENLFTDAFMKKKIKAGGAQGWIPLKIIASFPKMKKMSKDPKAIGSTLEALSKKLVVQ-GNRVRRKTPFVFPDKDGMADVASRTVVAVNIPTGSTVESLTGFFSACGVAETVRIIRNGGQHSKN-----KEIQPPMGAQRNFYATCQFSTLEEAIRAVNELTDRSSWRGGLRVML 579
            LS +T+  +V+Q EFYFSD NL TD ++ K IK    +G++P+ II SF K+K+++K+  A+ + L + SK +V + G +VRR  P    D D   ++  RTVVA N+P   +++SL   F   G  + VR+   G  +S N     K  +         +A  ++ TLE+A +AV ELTD+ +WR GL V L
Sbjct:  173 LSEDTRAQVVQQVEFYFSDANLPTDNYLMKFIKKD-PEGFVPIPIIGSFRKIKQLTKNYGALAAALRSSSKLVVSEDGKKVRRAEPLADIDLD---EIQGRTVVAENLPEDHSIQSLEKLFGTIGSVKMVRVCEPGSANSVNNAALAKHSKTDRVVSNKLHALVEYETLEQAEKAVAELTDQRNWRSGLHVRL 361
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BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Match: A0A2R6XE71_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XE71_MARPO)

HSP 1 Score: 115 bits (287), Expect = 5.660e-24
Identity = 73/192 (38.02%), Postives = 112/192 (58.33%), Query Frame = 1 
Query:   19 LSHETKTDIVKQAEFYFSDENLFTDAFMKKKIKAGGAQGWIPLKIIASFPKMKKMSKDPKAIGSTLEALSKKLVVQ-GNRVRRKTPFVFPDKDGMADVASRTVVAVNIPTGSTVESLTGFFSACGVAETVRIIR----NGGQHSKNKEIQPPMGAQRNFYATCQFSTLEEAIRAVNELTDRSSWRGGLRVML 579
            ++ E K  IVKQ EFYFSD+NL TD ++ K +K    +G++P+ ++ASF K+K + K+   + + L   +  +V + G +VRR  P   PD D + +V SRTVVA N+P   ++ES+   F + G  + VRI +    NG   +  K  +  M      +A  +F T+E+A +AV+ LTD  +WR GLRV L
Sbjct:  195 VNEELKAKIVKQVEFYFSDQNLPTDNYLMKFVKKD-PEGFVPIPVVASFRKIKNLVKNHGIVAAALRNSTLLVVSEDGKKVRRAQPL--PDVD-LEEVQSRTVVAENLPEDHSIESVEQLFGSVGNVKMVRICQPEAANGASQTAAK-FKSDMVVSNKLHALIEFETVEQAEKAVSALTDERNWRSGLRVRL 381
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BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Match: A0A7S0XGB4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XGB4_9CHLO)

HSP 1 Score: 111 bits (278), Expect = 9.640e-24
Identity = 86/215 (40.00%), Postives = 113/215 (52.56%), Query Frame = 1 
Query:    1 AAAVKDLSHETKTDIVKQAEFYFSDENLFTDAFMKKKIKAGGAQ-GWIPLKIIASFPKMKKMSKD--PKAIGSTLEALSKKLVV--QGNRVRRKTPFVFPDKDGMADVASRTVVAVNIPT----------GSTVESLTGFFSACGVAETVRIIRNGGQHSKNKE-------IQPPMGAQRNFYATCQFSTLEEAIRAVNELTDRSSWRGGLRVML 579
            AA  K+L+ E +  I+KQ EFYFSD NL TDAF+ KK  AG  Q GW+PL +I  F +MK++ K   P+ +G  L   S+ LVV  QG +VRR TP     K  + DV +RT+VA N             G +++S+   FSA G    VR+   G Q +           I  P  A    +A  +FST+EEA  AV  L +   WR GLRV L
Sbjct:   99 AAGPKELTPEQRGKILKQVEFYFSDANLPTDAFLMKK--AGSNQEGWVPLGVICGFNRMKQLLKKNPPRVVGEILALSSEALVVNEQGTQVRRATPL---PKFDLEDVQARTIVAENFGDNFGAGGGGGEGPSIDSVKRMFSAAGQVLMVRVRHPGMQTAAGATAASGLDLIVTPNSA---VHALVEFSTVEEAATAVTLLNNDRDWRNGLRVRL 305
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BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Match: A0A1Y1HK12_KLENI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HK12_KLENI)

HSP 1 Score: 115 bits (287), Expect = 1.150e-23
Identity = 75/202 (37.13%), Postives = 110/202 (54.46%), Query Frame = 1 
Query:    1 AAAVKDLSHETKTDIVKQAEFYFSDENLFTDAFMKKKIKAGGAQGWIPLKIIASFPKMKKMSKDPKAIGSTLEALSKKLVVQ--GNRVRRKTPFVFPDKDGMADVASRTVVAVNIPTGSTVESLTGFFSACGVAETVRIIRNGGQHSKNKEIQ---------PPMGAQRNFYATCQFSTLEEAIRAVNELTDRSSWRGGLRV 573
            AAA  ++S E +  IVKQ EFY SD+NL TD F+ K ++    +GW+P+K I  F K+K +SK+   I   + + S++LVV   G +VRR  P   PD + + D+  RTVVA N+P+  T++ +   FS  G    VRI    G +S  +  +         P +      +A  +  + E A RA  ELTDR +WR GL+V
Sbjct:  341 AAAPPEISEELREKIVKQVEFYLSDQNLPTDNFLMKLVRKD-PEGWVPIKTIGGFNKIKSLSKNHAVIAQAVRS-SQQLVVSSDGKKVRRAQPL--PDVN-LFDIQMRTVVAENLPSNPTIQGMEALFSQVGKVNMVRICHPEGANSATQSARDAQAKFKDGPSLLVSTRQHALIEMESFELADRACAELTDRQNWRSGLQV 537
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BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Match: C1E3K5_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E3K5_MICCC)

HSP 1 Score: 112 bits (279), Expect = 1.800e-23
Identity = 83/208 (39.90%), Postives = 110/208 (52.88%), Query Frame = 1 
Query:    7 AVKDLSHETKTDIVKQAEFYFSDENLFTDAFMKKKIKAGGAQGWIPLKIIASFPKMKKM-SKDP--KAIGSTLEALSKKLVVQ--GNRVRRKTPFVFPDKDGMADVASRTVVAVNIPTGSTVESLTGFFSACGVAETVRIIRNGGQHSKNKEIQPPMGAQRN------------FYATCQFSTLEEAIRAVNELTDRSSWRGGLRVML 579
            A K L+ E    IVKQ EFYFSD NL TDAF+ KK++A    G++P+ ++  F +MK +  K P  + + + L   S+ LVV   G RVRR TP   PD D + DV +RTVVA N  T  T+ES+   FSA G    VR+   G        +Q P GA +              +A  +F+T ++A RA   L D   WR GLRV L
Sbjct:   55 APKPLTDEQVDKIVKQVEFYFSDANLPTDAFLMKKVRAD-PNGFVPIGVVCGFNRMKTLLKKHPPIETVAAILRQHSEALVVSEDGIRVRRATPL--PDID-LEDVQARTVVAENFKTQPTIESVRDLFSAAGDVAMVRVRHPG--------MQTPAGATKPSGLDLIATPSNAVHALIEFNTRDDAARAAETLNDDKDWRNGLRVRL 250
[Close]
BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Match: A0A7S0IBH0_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IBH0_MICPS)

HSP 1 Score: 110 bits (274), Expect = 1.810e-23
Identity = 82/208 (39.42%), Postives = 109/208 (52.40%), Query Frame = 1 
Query:    7 AVKDLSHETKTDIVKQAEFYFSDENLFTDAFMKKKIKAGGAQGWIPLKIIASFPKMKKM-SKDP--KAIGSTLEALSKKLVVQ--GNRVRRKTPFVFPDKDGMADVASRTVVAVNIPTGSTVESLTGFFSACGVAETVRIIRNGGQHSKNKEIQPPMGAQRN------------FYATCQFSTLEEAIRAVNELTDRSSWRGGLRVML 579
            A K L+ E    IVKQ EFYFSD NL TDAF+ KK++A    G++P+ ++  F +MK +  K P  + + + L   S+ LVV   G RV+R TP   PD D + DV +RTVVA N  T  T+ES+   FSA G    VR+   G        +Q P GA +              +A  +F T ++A RA   L D   WR GLRV L
Sbjct:   69 APKPLTDEQVDKIVKQVEFYFSDANLPTDAFLMKKVRAD-PNGFVPIGVVCGFNRMKTLLKKHPPIETVAAILRQHSEALVVSEDGIRVQRATPL--PDID-LEDVQARTVVAENFKTQPTIESVRDLFSAAGDVAMVRVRHPG--------MQTPAGATKPSGLDLIATPSNAVHALIEFKTRDDAARAAETLNDDEDWRNGLRVRL 264
[Close]
BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Match: C1N3J9_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3J9_MICPC)

HSP 1 Score: 112 bits (280), Expect = 1.930e-23
Identity = 78/207 (37.68%), Postives = 108/207 (52.17%), Query Frame = 1 
Query:    1 AAAVKDLSHETKTDIVKQAEFYFSDENLFTDAFMKKKIKAGGAQGWIPLKIIASFPKMKKMSKDP--KAIGSTLEALSKKLVVQGNR---VRRKTPFVFPDKDGMADVASRTVVAVNIP-----TGSTVESLTGFFSACGVAETVRIIRNGGQH------SKNKEIQPPMGAQRNFYATCQFSTLEEAIRAVNELTDRSSWRGGLRV 573
            A A K L+ E K  I  Q EFYFSD NL TDAF+ KK++AGG +GW+PL +I SF +MK++ K      +   L  L   L+V  +    VRR  P   PD D + +V SRTV+A N P        T+E++   F++ G    VR+   G         +K+  +        + +A  +F T EEA+RAV  L +   WR GLRV
Sbjct:   67 APAPKPLTAEQKEKIFAQVEFYFSDANLPTDAFLMKKVRAGGDEGWVPLDVICSFNRMKQLLKKRPHSVVCDVLAELGSALLVSDDAKTAVRRVAPL--PDVD-LEEVQSRTVLAENFPGVNAGEAPTIEAVRELFASAGEVLVVRVRHPGMTQPAGVAAAKSSGLDLIQTPNAHVHALVEFKTAEEALRAVTTLNNDRDWRNGLRV 270
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20681.5922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTW6_ECTSI3.990e-13954.55HTH La-type RNA-binding domain-containing protein ... [more]
A0A5J4Y4J7_9CHLO4.070e-3239.44La-related 7 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608... [more]
D8QWC1_SELML4.750e-2838.34Uncharacterized protein (Fragment) n=2 Tax=Selagin... [more]
UPI000D1C965E9.360e-2637.82la-related protein 6C n=2 Tax=Selaginella moellend... [more]
A0A2R6XE71_MARPO5.660e-2438.02Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
A0A7S0XGB4_9CHLO9.640e-2440.00Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A1Y1HK12_KLENI1.150e-2337.13HTH La-type RNA-binding domain-containing protein ... [more]
C1E3K5_MICCC1.800e-2339.90Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S0IBH0_MICPS1.810e-2339.42Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
C1N3J9_MICPC1.930e-2337.68Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20681contigH-elongata_contig20681:1029..6266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score426.0
Seed ortholog evalue2.2e-116
Seed eggNOG ortholog2880.D7FTW6
Preferred nameLARP6
KEGG koko:K15191,ko:K18733
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0006417,GO:0008092,GO:0008150,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010712,GO:0010714,GO:0017022,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032965,GO:0032967,GO:0032991,GO:0034248,GO:0034250,GO:0035613,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051099,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0097159,GO:1901363,GO:1902415,GO:1902416,GO:1905214,GO:1905216,GO:1990825,GO:1990904,GO:2000112
EggNOG free text desc.RNA processing
EggNOG OGsCOG5193@1,KOG1855@2759
COG Functional cat.JO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA-binding protein Lupus La
Ec32 orthologEc-12_002800.1
Exons9
Model size1374
Cds size1374
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.1984165-CDS-H-elongata_contig20681:1028..12441622930156.1984165-CDS-H-elongata_contig20681:1028..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 1029..1244 -
1691679302.5929325-CDS-H-elongata_contig20681:1028..12441691679302.5929325-CDS-H-elongata_contig20681:1028..1244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 1029..1244 -
1622930156.2154398-CDS-H-elongata_contig20681:2383..25251622930156.2154398-CDS-H-elongata_contig20681:2383..2525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 2384..2525 -
1691679302.6125693-CDS-H-elongata_contig20681:2383..25251691679302.6125693-CDS-H-elongata_contig20681:2383..2525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 2384..2525 -
1622930156.2394009-CDS-H-elongata_contig20681:2979..32701622930156.2394009-CDS-H-elongata_contig20681:2979..3270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 2980..3270 -
1691679302.6288986-CDS-H-elongata_contig20681:2979..32701691679302.6288986-CDS-H-elongata_contig20681:2979..3270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 2980..3270 -
1622930156.2569325-CDS-H-elongata_contig20681:3738..39411622930156.2569325-CDS-H-elongata_contig20681:3738..3941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 3739..3941 -
1691679302.6400306-CDS-H-elongata_contig20681:3738..39411691679302.6400306-CDS-H-elongata_contig20681:3738..3941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 3739..3941 -
1622930156.2824738-CDS-H-elongata_contig20681:4180..42651622930156.2824738-CDS-H-elongata_contig20681:4180..4265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 4181..4265 -
1691679302.6491354-CDS-H-elongata_contig20681:4180..42651691679302.6491354-CDS-H-elongata_contig20681:4180..4265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 4181..4265 -
1622930156.2969983-CDS-H-elongata_contig20681:4563..46731622930156.2969983-CDS-H-elongata_contig20681:4563..4673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 4564..4673 -
1691679302.657676-CDS-H-elongata_contig20681:4563..46731691679302.657676-CDS-H-elongata_contig20681:4563..4673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 4564..4673 -
1622930156.3155282-CDS-H-elongata_contig20681:4992..50521622930156.3155282-CDS-H-elongata_contig20681:4992..5052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 4993..5052 -
1691679302.666995-CDS-H-elongata_contig20681:4992..50521691679302.666995-CDS-H-elongata_contig20681:4992..5052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 4993..5052 -
1622930156.331334-CDS-H-elongata_contig20681:5515..56491622930156.331334-CDS-H-elongata_contig20681:5515..5649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 5516..5649 -
1691679302.677027-CDS-H-elongata_contig20681:5515..56491691679302.677027-CDS-H-elongata_contig20681:5515..5649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 5516..5649 -
1622930156.349651-CDS-H-elongata_contig20681:6133..62661622930156.349651-CDS-H-elongata_contig20681:6133..6266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 6134..6266 -
1691679302.6875107-CDS-H-elongata_contig20681:6133..62661691679302.6875107-CDS-H-elongata_contig20681:6133..6266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20681 6134..6266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20681.5922.1prot_H-elongata_contig20681.5922.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20681 1029..6266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20681.5922.1

>prot_H-elongata_contig20681.5922.1 ID=prot_H-elongata_contig20681.5922.1|Name=mRNA_H-elongata_contig20681.5922.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=458bp
AAAVKDLSHETKTDIVKQAEFYFSDENLFTDAFMKKKIKAGGAQGWIPLK
IIASFPKMKKMSKDPKAIGSTLEALSKKLVVQGNRVRRKTPFVFPDKDGM
ADVASRTVVAVNIPTGSTVESLTGFFSACGVAETVRIIRNGGQHSKNKEI
QPPMGAQRNFYATCQFSTLEEAIRAVNELTDRSSWRGGLRVMLANGVTVE
KALARLKSSGVRKPRQERDARSPARREGISPRPNGHALKGQGAHTPRNGQ
PRSRSLTELELEAVGAIADTGAAAAVDVVVHQSLHRSTHEDGGSSGDGGL
DVPHTIARKPRSASNVDTVSTEAGGEGMLHESLLRHNNTSNGDGLPRKGV
VQSVSPEGVSWIKRDGNGSRKGGNRIPFWMADVVTKDGQQQQQPYLRKGD
QVEYRTWRGNDGKMVAVRVERIKERPRAVMGGGNNGGGGGGLAGQWRTDR
ATQAHFR*
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mRNA from alignment at H-elongata_contig20681:1029..6266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20681.5922.1 ID=mRNA_H-elongata_contig20681.5922.1|Name=mRNA_H-elongata_contig20681.5922.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5238bp|location=Sequence derived from alignment at H-elongata_contig20681:1029..6266- (Himanthalia elongata Himel1 dioecious)
GCGGCGGCCGTGAAAGACCTTTCCCACGAGACCAAGACCGATATCGTGAA
GCAGGCGGAGTTCTACTTCAGCGACGAGAATTTGTTCACCGACGCATTCA
TGAAGAAGAAGATCAAGGCCGGAGGGGCACAAGGTGAGAGACAAGCATGC
ATGCAGATATATGGGGGGTAGAGGCAGAAGAAACGATCTACACCACTGGT
TGATGAGCTGTAGTATAAAAATAATTACACTTGACACCGCACGACACTTA
TCTTATCTCCATGCCGTGGCAAAGCCGGAAGAAAAACAGAGAGGGATAGG
GCGTGGTCATTTGTGATGGGGGTAGGGTAGTTTGATCTCTCTCTATCCCC
ACCCAACTTCCTTTGTCTTGCTGCCCCTGTTCTACCCCCCCCCTCTTTTT
ATCTAGATGGCGACGTTGGATATTTTCTTGCTTCCTGTGTGCGCCTTATC
TGCCGTGTGGCTCATATGGTTGAGGTATGGGGCTGTGGAAGTGGCGAACA
AAACACACACACATCCAAACTGCACCACCGCAATCGATCCATCCGATCTG
CGTGTGCGTCCTGTCGAACTGCCCCACCATGGCCTCTCTTTAACTCCGCG
TTAACTGGATCATGAAGGCTGGATCCCGCTCAAGATTATCGCAAGTTTCC
CGAAGATGAAGAAGATGTCCAAGGATCCCAAGGCGATCGGGTCGACCCTC
GAGGCGTTATCGAAGAAGCTCGTGGTGCAAGGCAACCGCGTTCGCCGCAA
GGTTTGCTTCGTTCCGCGACAGGGAGAATGCATGGACGGCGGGGGGGGGG
GGAGGGGGCGGCTTTGAAGGGGANNNNNNNNNNGGGGAAGGCGCCGGGGG
CCGCCCCCGGCTTTGTTTCTTTCCGATAAAGGGAGTTTGGCGGGGGGGGG
GGGGGGGGGGGGGGGGGGCGGCTTTGAAGAGGAATCTAGACGGTATCAAA
ACGAGAGGATCTTTCTGCTTCAATGTCGCTGCTGCTGCCGCGGAAGTGGA
CGGAGTAAGATGCCTGGTGCATCCGAGAGAGATATATAGAGAGTTGTGTG
CATGCTTCGTGATCATAATGAGCACTCTCTCTTTGAATGTAGTAATGTTT
TCGAGAAAATCGTTTATTTTAACCACTGAAACCCTTCGTCGGTGACTGCT
TCGTCGTGATTACGACTAGTGTAACGTTTTTTTCTTGTTCTTTTGTTCAT
TTCTCTTGATCCAGACGCCGTTCGTGTTTCCGGACAAGGACGGTATGGCC
GACGTCGCCAGCAGGACGGTGGTGGTGAGATTAAGATGCCCTTCAAGCCT
AAGTCCGCGTGCGGTGCCTACGAACTCCACCTATCTTACTCCGTTGGTAG
TGGTATGATTAGATTAATAGTGTAATAGTGTAATATTGTAATAGGCTATA
TTAATACTAGTGTGTACTCATCACCGTTAAGAGTTCCCTTCTCGATTGAT
CGCTTTTTGCTGGTGCCGTATTGCGACCAAGATATTCGTCGGTATTCATC
GGTCTGTCGCAAAACCTCTTACGAAATTCGACCCGATTCAATTCTCACTT
CGATCCAACCCGATCCGCACTCGATCTTTTTCCTCGAAAAAAGGCGGTGA
ACATCCCCACCGGTTCCACTGTTGAGTCGCTCACAGGGTTCTTTTCCGCC
TGTGGAGTTGCGGAGACCGTTCGAATTATCCGCAACGGAGGGCAGCACTC
CAAGTGAGCTGATCAGGTTTTTCGTAAATTATATTTCCTATACGACGTCG
AGGCGAGAGCGCACGCATAACGTGGGGTTGATTCACTCGCGGATCTCTGT
GGTAGGAGTTGTATATCTTGACGAGGCGTATCTGTAAGAAATAGCGGGAG
CGGATTTACATGACCATGGAGCCGTCGCTGCGATAAAGCTTATGATGTGG
TGCACGACGCACTGTATTTTCCCCATTGAGGCACGAACCCACTTTTGTCA
ACTCCGGGGGGTACGTTCTATCTCACGTGCTGACAACGTTGCCTCTCCCA
GGAACAAGGAGATCCAACCTCCCATGGGAGCACAACGCAACTTTTACGCC
ACCTGTCAGTTTTCTACTCTAGAGGAAGCAATCCGAGTGAGTGTTTTATG
AAACGTGGGCGATGGAACTATCTTAAAAGTTTTTTTAATTGTGAATGGAC
CGCAGCATGGGGGGGGTGTTGCAGACCAACGCTCGCAAGAGAATCCCTCG
TTCAACATTAGCCAGTCATTCGGTGGTTGATTCTAAGAGCGACAAGAATG
TGTCAGTTCTCCAGATGTTTGTTTTACTCATTTCACCGTACGAGGCGCCA
ATCGCCCTGCACCCGTCCCACGTAGGCTGTGAACGAACTTACCGACCGCA
GCAGCTGGAGGGGCGGCCTAAGAGTTATGCTCGCGAACGGCGTTACGGTA
GAGAAGGCGTTGGCAAGGCTCAAGAGTTCTGGCGTAAGGAAGCCTCGTCA
AGAGAGAGACGCTCGCTCCCCCGCCAGGAGAGAAGGAATATCTCCCCGAC
CTAATGGTCACGCCCTTAAGGGCCAAGGGTAAGCGGTCCTTTTTTTCGTG
GGATTGAGGAGAGAAAGCATACTTGAGTTTTTCACAACTTTCAGGCCATT
GAAAGGAGGGAAAACATACAGTATCTGATTCGGAATACGGTGTCTGTTGT
GTGTTGTGCGATGGGTCAGTTGGCTGCCCGAGGTCTCCCATAAAATTTTA
ATTCGATGCACGATTGATCATGTTTTGTTTGGTAAAGGTGTACGCGATCG
ATTCACGCGTTATCGTCGTCGTATGCGCAGCTTTCTCCACATAAAAAAAA
ACTCTTGTGAACACAGGAAGGCGTTCGAAATTGTTAGCAGTGGTTTGGAT
ATAAACGAAGGGTAGAGGGGCGGCAAAGAGTCGACATTCGCCAACACCTT
TATCTCTTGTCCGAACCCGTTCCATTTTTCCTCCATTCCCGCCCTCTCTC
TACCTCCTACCTTCGCGTGAACGACTCGCATCCTCTCGCGGCTCAGCGCT
CACACCCCGCGCAATGGACAGCCGCGATCACGCTCTCTCACGGAGCTCGA
GTTAGAAGCCGTCGGCGCCATTGCCGATACTGGGGCTGCCGCTGCTGTCG
ATGTTGTTGTACATCAGAGTCTACACCGCAGCACCCACGAGGACGGGGGA
AGCAGCGGAGATGGTGGCTTGGACGTGCCGCACACGATTGCGCGAAAGCC
GCGCTCAGCGTCGAATGTGGATACCGTGTCTACCGAGGCCGGAGGCGAAG
GCATGTTGCACGAATCCCTTCTGCGGCATAACAACACGTGAGAAAAAGAG
AACACAGAGGAAGGGTGGTGAAGGGTGGGGACGGGAAAGGCTGAGGTCCG
GTGCGATCTCAACTAAACCGTCTATCGGGGTTTGTATACGTTCCTTTTTG
TTTCGTCCTATGTGGCGATAGAAGGACTACTCGGAAGTCATGAGCTTCAG
CTCTCTACGTTACGTGACGATATTTGTTGTTGTTTTTGTAGTCTAGTGCT
AGGGCAAGGCAGGCACCATCGGATTTCGTTTTGGTTTGGGACGAAGGTTC
TCGAAGGTCCATCGGCCAAGGCGGCGCGCAGGTGGGCAATGAGAGACGGG
GAGGGGAGAAGGAAAGAGCTGGGAGCTAAAATTTAGACAGTCCCGGTAAA
TGCATAATGTATTAATGGTGTTAGGTATTGTTAATGTGTTTCCCGTTTCA
CCTAGGGGCGTTATTGTGTTCCCCTTTTTCGTACGTTTTAGGAGCAACGG
AGATGGACTGCCTCGAAAGGGCGTGGTGCAGTCAGTGTCCCCGGAGGGCG
TGTCTTGGATAAAGAGGGACGGAAACGGGTCGCGCAAGGGAGGCAACCGC
ATCCCGTTCTGGATGGCGGACGTCGTGACGAAGGTGTCGTAGCCCTTAAA
GGTTTTGTCATGAGTATTAAAAACATCCTTTGTTATTAATAGATATCACA
AGTGCGTTGCGACACCTGTAGCTGTGGCTGCTAGAGAGATTTAAATGAGG
TAAGGGGCTTCGTAGTGCATGGAGGGGGGAAGAGGGTGTATAATTATAGC
TTAAAAGTGTGTGACATTCTTACGGACATAGACCACGCATCATCATTATC
CCGAATACCCCGGGTTGGAGCAATATGCTGGGTTTTCCTCGGCCAGACTG
CGTTCCACGAAAATTATACCAGCATTTTGTTTTGAGACATACACCGGGTA
ACCGAATGTTGCGCTTTGAGCGGGCGCGGTTATCGTCAAATAATTGCCCC
GCAAATGCATTTGGATCTAGGCGCGAAAGCGTAAGGGCCACATGTCCACT
ACATCCACAAAACGACTTTGTGTGTTATATAGTCATGCTACAATCCGTCG
GAGTACTCTCTAAAGTCTACACTTTCTCTTAAGGCTTTCCAACATTTCAT
TACTCAGCAGGCGTCCTGTTGAATGCAACGCGTTTCGCCCCTCCCTGTGG
AGAGGGCAAGACTTAAATGACAAAGGACGTACTAGTACTGTATACCGTAT
TAATACTATTAATAGTATGCACTCTATCGAGGGGGGGGAGAGTGGTAACA
TAAAGTGACGCGCAAGCTGCAAGACACATCTTTTCGACTTGATACCCTAT
TGCGCATTGGAGAGACGCCGCCCCGAGCACCCGTCCTGCTGCGATCATGG
GGTATTCGCCTCGGCGTACATCTCGACTGCCCGTCCGAGTCTTAACGGTC
TGCTCGCGAAAGATAACATATAAATAAATGCATCTGATACTCGTTTGGCG
AACTACCGGAATGAAATGGATGCCTTTCGAAGGAAATAGCTCCTCCTTCA
TCTTCTCTTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTT
CCCTGCCATGCCATGCCATCATTCCACCGATCACCACTCAATCGCTGCTG
CTGTGCTTCTCCGAAGATGTTCCAATCGTGACCCAGTGTGGGGGCCTTGC
GGTGGCTCAACTCAAACGATAAACTTTCTTTTTCTCTCTTCCCTCTCTTT
CTCTTTCTCTTTCTCTCTGCAGGATGGGCAGCAGCAGCAGCAGCCGTATC
TTCGCAAGGGCGACCAGGTAGAGTATCGCACGTGGAGAGGCAACGACGGT
AAGATGGTAGCAGTGCGAGTGGAGCGTATCAAAGAGAGGCCGCGCGCGGT
CATGGGTGGCGGTAATAACGGCGGCGGTGGAGGCGGTCTCGCGGGGCAGT
GGCGCACGGACAGGGCCACCCAGGCGCACTTCCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig20681:1029..6266-

>mRNA_H-elongata_contig20681.5922.1 ID=mRNA_H-elongata_contig20681.5922.1|Name=mRNA_H-elongata_contig20681.5922.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2748bp|location=Sequence derived from alignment at H-elongata_contig20681:1029..6266- (Himanthalia elongata Himel1 dioecious)
GCGGCGGCCGTGAAAGACCTTTCCCACGAGACCAAGACCGATATCGTGAA
GCAGGCGGAGTTCTACTTCAGCGACGAGAATTTGTTCACCGACGCATTCA
TGAAGAAGAAGATCAAGGCCGGAGGGGCACAAGGCGGCGGCCGTGAAAGA
CCTTTCCCACGAGACCAAGACCGATATCGTGAAGCAGGCGGAGTTCTACT
TCAGCGACGAGAATTTGTTCACCGACGCATTCATGAAGAAGAAGATCAAG
GCCGGAGGGGCACAAGGCTGGATCCCGCTCAAGATTATCGCAAGTTTCCC
GAAGATGAAGAAGATGTCCAAGGATCCCAAGGCGATCGGGTCGACCCTCG
AGGCGTTATCGAAGAAGCTCGTGGTGCAAGGCAACCGCGTTCGCCGCAAG
GCTGGATCCCGCTCAAGATTATCGCAAGTTTCCCGAAGATGAAGAAGATG
TCCAAGGATCCCAAGGCGATCGGGTCGACCCTCGAGGCGTTATCGAAGAA
GCTCGTGGTGCAAGGCAACCGCGTTCGCCGCAAGACGCCGTTCGTGTTTC
CGGACAAGGACGGTATGGCCGACGTCGCCAGCAGGACGGTGGTGACGCCG
TTCGTGTTTCCGGACAAGGACGGTATGGCCGACGTCGCCAGCAGGACGGT
GGTGGCGGTGAACATCCCCACCGGTTCCACTGTTGAGTCGCTCACAGGGT
TCTTTTCCGCCTGTGGAGTTGCGGAGACCGTTCGAATTATCCGCAACGGA
GGGCAGCACTCCAAGCGGTGAACATCCCCACCGGTTCCACTGTTGAGTCG
CTCACAGGGTTCTTTTCCGCCTGTGGAGTTGCGGAGACCGTTCGAATTAT
CCGCAACGGAGGGCAGCACTCCAAGAACAAGGAGATCCAACCTCCCATGG
GAGCACAACGCAACTTTTACGCCACCTGTCAGTTTTCTACTCTAGAGGAA
GCAATCCGAGAACAAGGAGATCCAACCTCCCATGGGAGCACAACGCAACT
TTTACGCCACCTGTCAGTTTTCTACTCTAGAGGAAGCAATCCGAGCTGTG
AACGAACTTACCGACCGCAGCAGCTGGAGGGGCGGCCTAAGAGTTATGCT
CGCGAACGGCGTTACGGTAGAGAAGGCGTTGGCAAGGCTCAAGAGTTCTG
GCGTAAGGAAGCCTCGTCAAGAGAGAGACGCTCGCTCCCCCGCCAGGAGA
GAAGGAATATCTCCCCGACCTAATGGTCACGCCCTTAAGGGCCAAGGGCT
GTGAACGAACTTACCGACCGCAGCAGCTGGAGGGGCGGCCTAAGAGTTAT
GCTCGCGAACGGCGTTACGGTAGAGAAGGCGTTGGCAAGGCTCAAGAGTT
CTGGCGTAAGGAAGCCTCGTCAAGAGAGAGACGCTCGCTCCCCCGCCAGG
AGAGAAGGAATATCTCCCCGACCTAATGGTCACGCCCTTAAGGGCCAAGG
CGCTCACACCCCGCGCAATGGACAGCCGCGATCACGCTCTCTCACGGAGC
TCGAGTTAGAAGCCGTCGGCGCCATTGCCGATACTGGGGCTGCCGCTGCT
GTCGATGTTGTTGTACATCAGAGTCTACACCGCAGCACCCACGAGGACGG
GGGAAGCAGCGGAGATGGTGGCTTGGACGTGCCGCACACGATTGCGCGAA
AGCCGCGCTCAGCGTCGAATGTGGATACCGTGTCTACCGAGGCCGGAGGC
GAAGGCATGTTGCACGAATCCCTTCTGCGGCATAACAACACCGCTCACAC
CCCGCGCAATGGACAGCCGCGATCACGCTCTCTCACGGAGCTCGAGTTAG
AAGCCGTCGGCGCCATTGCCGATACTGGGGCTGCCGCTGCTGTCGATGTT
GTTGTACATCAGAGTCTACACCGCAGCACCCACGAGGACGGGGGAAGCAG
CGGAGATGGTGGCTTGGACGTGCCGCACACGATTGCGCGAAAGCCGCGCT
CAGCGTCGAATGTGGATACCGTGTCTACCGAGGCCGGAGGCGAAGGCATG
TTGCACGAATCCCTTCTGCGGCATAACAACACGAGCAACGGAGATGGACT
GCCTCGAAAGGGCGTGGTGCAGTCAGTGTCCCCGGAGGGCGTGTCTTGGA
TAAAGAGGGACGGAAACGGGTCGCGCAAGGGAGGCAACCGCATCCCGTTC
TGGATGGCGGACGTCGTGACGAAGGAGCAACGGAGATGGACTGCCTCGAA
AGGGCGTGGTGCAGTCAGTGTCCCCGGAGGGCGTGTCTTGGATAAAGAGG
GACGGAAACGGGTCGCGCAAGGGAGGCAACCGCATCCCGTTCTGGATGGC
GGACGTCGTGACGAAGGATGGGCAGCAGCAGCAGCAGCCGTATCTTCGCA
AGGGCGACCAGGTAGAGTATCGCACGTGGAGAGGCAACGACGGTAAGATG
GTAGCAGTGCGAGTGGAGCGTATCAAAGAGAGGCCGCGCGCGGTCATGGG
TGGCGGTAATAACGGCGGCGGTGGAGGCGGTCTCGCGGGGCAGTGGCGCA
CGGACAGGGCCACCCAGGCGCACTTCCGGTGAGATGGGCAGCAGCAGCAG
CAGCCGTATCTTCGCAAGGGCGACCAGGTAGAGTATCGCACGTGGAGAGG
CAACGACGGTAAGATGGTAGCAGTGCGAGTGGAGCGTATCAAAGAGAGGC
CGCGCGCGGTCATGGGTGGCGGTAATAACGGCGGCGGTGGAGGCGGTCTC
GCGGGGCAGTGGCGCACGGACAGGGCCACCCAGGCGCACTTCCGGTGA
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