mRNA_H-elongata_contig206805.5921.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206805.5921.1
Unique NamemRNA_H-elongata_contig206805.5921.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206805.5921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206805contigH-elongata_contig206805:408..955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size550
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.1279607-UTR-H-elongata_contig206805:407..6491622930156.1279607-UTR-H-elongata_contig206805:407..649Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig206805 408..649 +
1691679302.5721538-UTR-H-elongata_contig206805:407..6491691679302.5721538-UTR-H-elongata_contig206805:407..649Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig206805 408..649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.1454043-CDS-H-elongata_contig206805:649..9551622930156.1454043-CDS-H-elongata_contig206805:649..955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206805 650..955 +
1691679302.581934-CDS-H-elongata_contig206805:649..9551691679302.581934-CDS-H-elongata_contig206805:649..955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206805 650..955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206805.5921.1prot_H-elongata_contig206805.5921.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206805 650..955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206805.5921.1

>prot_H-elongata_contig206805.5921.1 ID=prot_H-elongata_contig206805.5921.1|Name=mRNA_H-elongata_contig206805.5921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MLLARAVHVFCGGNYNTEILGLAYIGSRDTSANRNVGVTSWATGARRLIC
RSGMRIRFAGLCTAVVVALDALMIALTHYYLATSMADRVRVRVRVNPNPN
PN
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mRNA from alignment at H-elongata_contig206805:408..955+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206805.5921.1 ID=mRNA_H-elongata_contig206805.5921.1|Name=mRNA_H-elongata_contig206805.5921.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=548bp|location=Sequence derived from alignment at H-elongata_contig206805:408..955+ (Himanthalia elongata Himel1 dioecious)
AGCTCAAGCGCAGGTGGGTTCCGTTGTCTGCTTCTTAAATCGTCGGAATA
TGGGTGTTACGGTGATGTGGGGACATTGTTTTTATTTTATTTTGTCGTAC
TTAATACTGTAACCCTCCTGCAGTTCTGGGCGGGTCCGTAGTCTCAAGGG
ATCATCCCATCTCTTCCCCGTACTTGCCTTTTGTTTGTTATCCTGTAATA
GCGTTGGGTTTAGAACTCCCACAGCCTGTCTATTTTCATCGAATGTTGCT
TGCTCGCGCTGTTCACGTTTTCTGCGGCGGAAACTACAACACTGAAATTT
TGGGCCTAGCCTATATTGGAAGTCGGGATACTTCCGCCAACCGGAACGTT
GGTGTCACCAGTTGGGCCACCGGGGCACGGCGGCTAATTTGTAGGAGCGG
AATGCGGATACGTTTCGCCGGACTATGCACAGCTGTAGTAGTAGCTTTGG
ACGCGCTTATGATAGCACTAACCCATTATTATCTTGCTACAAGTATGGCG
GATAGGGTTAGGGTTAGGGTTAGGGTTAACCCTAACCCTAACCCTAAC
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Coding sequence (CDS) from alignment at H-elongata_contig206805:408..955+

>mRNA_H-elongata_contig206805.5921.1 ID=mRNA_H-elongata_contig206805.5921.1|Name=mRNA_H-elongata_contig206805.5921.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig206805:408..955+ (Himanthalia elongata Himel1 dioecious)
ATGTTGCTTGCTCGCGCTGTTCACGTTTTCTGCGGCGGAAACTACAACAC
TGAAATTTTGGGCCTAGCCTATATTGGAAGTCGGGATACTTCCGCCAACC
GGAACGTTGGTGTCACCAGTTGGGCCACCGGGGCACGGCGGCTAATTTGT
AGGAGCGGAATGCGGATACGTTTCGCCGGACTATGCACAGCTGTAGTAGT
AGCTTTGGACGCGCTTATGATAGCACTAACCCATTATTATCTTGCTACAA
GTATGGCGGATAGGGTTAGGGTTAGGGTTAGGGTTAACCCTAACCCTAAC
CCTAACATGTTGCTTGCTCGCGCTGTTCACGTTTTCTGCGGCGGAAACTA
CAACACTGAAATTTTGGGCCTAGCCTATATTGGAAGTCGGGATACTTCCG
CCAACCGGAACGTTGGTGTCACCAGTTGGGCCACCGGGGCACGGCGGCTA
ATTTGTAGGAGCGGAATGCGGATACGTTTCGCCGGACTATGCACAGCTGT
AGTAGTAGCTTTGGACGCGCTTATGATAGCACTAACCCATTATTATCTTG
CTACAAGTATGGCGGATAGGGTTAGGGTTAGGGTTAGGGTTAACCCTAAC
CCTAACCCTAAC
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