mRNA_H-elongata_contig206792.5920.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206792.5920.1
Unique NamemRNA_H-elongata_contig206792.5920.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Match: D8LCP7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP7_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 9.960e-20
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   10 QSSPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFESKDSE 165
            +SSP +TA+E TKLSVRRGWM K+N+Q +WQRRY CLVPHTFLYYFESKD+E
Sbjct:   90 KSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAE 141
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BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Match: A0A6H5JHM0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.970e-20
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   10 QSSPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFESKDSE 165
            +SSP +TA+E TKLSVRRGWM K+N+Q +WQRRY CLVPHTFLYYFESKD+E
Sbjct:   95 KSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAE 146
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BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Match: A0A835Z0T3_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.310e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 MICQSSPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFESKDS 162
            ++ +SSP + A  T +L VR GW+LKRNEQR WQ R+  +VPHT+LYYFES++S
Sbjct:   30 LVVKSSPLRDAQTTKRLGVRSGWLLKRNEQRVWQPRFCVMVPHTYLYYFESENS 83
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BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Match: A0A7S4IVE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IVE8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.570e-12
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   10 QSSPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFESK 156
            +S+P +T    T LSV+ GW++KRNEQ  WQRR+ C+VPHTFLYYFE++
Sbjct:   46 KSAPPRTPEVMTMLSVKSGWLVKRNEQHVWQRRWCCVVPHTFLYYFEAE 94
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BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Match: A0A7S2K1M2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1M2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.400e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   10 QSSPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFESK 156
            +S+P +T    TKL+ + GW+ KRNEQ  WQ+R+ C+VPHTFLYYF+S+
Sbjct:   67 KSAPPRTPECMTKLASKSGWLYKRNEQNKWQKRWCCVVPHTFLYYFDSE 115
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BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Match: A0A7S2K3B6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3B6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.410e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   10 QSSPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFESK 156
            +S+P +T    TKL+ + GW+ KRNEQ  WQ+R+ C+VPHTFLYYF+S+
Sbjct:   67 KSAPPRTPECMTKLASKSGWLYKRNEQNKWQKRWCCVVPHTFLYYFDSE 115
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BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Match: A0A1E7FMA5_9STRA (PH domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMA5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.380e-11
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   10 QSSPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFES 153
            +S+P +T      LSV+ GW+ KRNEQ  WQ RY C+VPHTFLYYF+S
Sbjct:   44 KSAPPRTPDVLGMLSVKSGWLFKRNEQHVWQARYCCVVPHTFLYYFDS 91
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BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Match: A0A7S2M8C0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M8C0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.940e-11
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   10 QSSPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFES 153
            +S+P +T    + LS + GW++KRNEQ  WQ+R+ C+VPHTFLYYFE+
Sbjct:   46 KSAPPRTPEVMSMLSSKCGWLVKRNEQHVWQKRWCCVVPHTFLYYFEA 93
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BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Match: B5YND1_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YND1_THAPS)

HSP 1 Score: 62.4 bits (150), Expect = 5.710e-10
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   10 QSSPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFES 153
            +S+P +T    + LS + GW++KRNEQ  WQ+R+ C+VPHTFLYYFE+
Sbjct:   46 KSAPPRTPEVMSLLSSKCGWLVKRNEQHVWQKRWCCVVPHTFLYYFEA 93
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BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Match: A0A482V3Z5_9ARCH (PH domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V3Z5_9ARCH)

HSP 1 Score: 60.1 bits (144), Expect = 6.250e-10
Identity = 24/50 (48.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   16 SPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFESKDSE 165
            +P K A  T+ L+V+ G+++KRNEQ +WQ R++C+VPH FLYY+++   E
Sbjct:   69 TPSKDALTTSSLAVKAGYLMKRNEQGNWQNRFLCVVPHMFLYYYDTDIGE 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206792.5920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LCP7_ECTSI9.960e-2076.92PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JHM0_9PHAE9.970e-2076.92PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835Z0T3_9STRA2.310e-1357.41PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S4IVE8_9STRA2.570e-1259.18Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2K1M2_9STRA3.400e-1155.10Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2K3B6_9STRA3.410e-1155.10Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1E7FMA5_9STRA6.380e-1158.33PH domain-containing protein n=1 Tax=Fragilariopsi... [more]
A0A7S2M8C0_9STRA6.940e-1154.17Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
B5YND1_THAPS5.710e-1054.17Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A482V3Z5_9ARCH6.250e-1048.00PH domain-containing protein n=1 Tax=archaeon TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206792contigH-elongata_contig206792:548..712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog2880.D8LCP7
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs2E9MN@1,2SFYW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.0853508-CDS-H-elongata_contig206792:547..7121622930156.0853508-CDS-H-elongata_contig206792:547..712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206792 548..712 +
1691679302.557658-CDS-H-elongata_contig206792:547..7121691679302.557658-CDS-H-elongata_contig206792:547..712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206792 548..712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206792.5920.1prot_H-elongata_contig206792.5920.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206792 548..712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206792.5920.1

>prot_H-elongata_contig206792.5920.1 ID=prot_H-elongata_contig206792.5920.1|Name=mRNA_H-elongata_contig206792.5920.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MICQSSPQKTASETTKLSVRRGWMLKRNEQRSWQRRYVCLVPHTFLYYFE
SKDSE
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mRNA from alignment at H-elongata_contig206792:548..712+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206792.5920.1 ID=mRNA_H-elongata_contig206792.5920.1|Name=mRNA_H-elongata_contig206792.5920.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig206792:548..712+ (Himanthalia elongata Himel1 dioecious)
ATGATCTGTCAGAGCTCCCCCCAGAAGACCGCGTCGGAGACGACCAAGCT
CTCCGTTCGGCGCGGCTGGATGTTGAAGAGAAACGAGCAGCGATCCTGGC
AACGGCGCTACGTTTGCCTGGTGCCCCACACCTTCCTCTACTACTTTGAG
TCCAAGGATTCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig206792:548..712+

>mRNA_H-elongata_contig206792.5920.1 ID=mRNA_H-elongata_contig206792.5920.1|Name=mRNA_H-elongata_contig206792.5920.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig206792:548..712+ (Himanthalia elongata Himel1 dioecious)
ATGATCTGTCAGAGCTCCCCCCAGAAGACCGCGTCGGAGACGACCAAGCT
CTCCGTTCGGCGCGGCTGGATGTTGAAGAGAAACGAGCAGCGATCCTGGC
AACGGCGCTACGTTTGCCTGGTGCCCCACACCTTCCTCTACTACTTTGAG
TCCAAGGATTCCGAGATGATCTGTCAGAGCTCCCCCCAGAAGACCGCGTC
GGAGACGACCAAGCTCTCCGTTCGGCGCGGCTGGATGTTGAAGAGAAACG
AGCAGCGATCCTGGCAACGGCGCTACGTTTGCCTGGTGCCCCACACCTTC
CTCTACTACTTTGAGTCCAAGGATTCCGAG
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