mRNA_H-elongata_contig206747.5919.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206747.5919.1
Unique NamemRNA_H-elongata_contig206747.5919.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Match: D7FHG8_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG8_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.010e-28
Identity = 47/52 (90.38%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 QAAAQVIKNSMDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIGVLTFK 156
            +AAAQ+IKNSMDKKFGASWHCAIGEGFGFE+TYQQ+NMIY+FYGQIGVLTFK
Sbjct:   82 EAAAQLIKNSMDKKFGASWHCAIGEGFGFEITYQQRNMIYIFYGQIGVLTFK 133
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BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Match: A0A836CH10_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH10_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.030e-25
Identity = 41/52 (78.85%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 QAAAQVIKNSMDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIGVLTFK 156
            +AAAQ+IKNS+DKKFGASWHCAIGEGFGFE+TYQ++NMIY++YGQ+GVL +K
Sbjct:   54 EAAAQLIKNSLDKKFGASWHCAIGEGFGFEITYQKRNMIYMYYGQLGVLAYK 105
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BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Match: A0A482UU53_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UU53_9ARCH)

HSP 1 Score: 90.1 bits (222), Expect = 1.070e-22
Identity = 35/52 (67.31%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 QAAAQVIKNSMDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIGVLTFK 156
            QAAAQ+IK+++DKKFGA+WHC IGEGFGF++TYQ +NM+Y++YG IG+L +K
Sbjct:   14 QAAAQLIKSTLDKKFGAAWHCVIGEGFGFDITYQAKNMVYIYYGTIGILAYK 65
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BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Match: A0A812X8N6_SYMMI (Dynein light chain n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X8N6_SYMMI)

HSP 1 Score: 91.7 bits (226), Expect = 1.400e-22
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 QAAAQVIKNSMDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIGVLTFK 156
            +AAAQ+IK +MDKKFGA+WHC IGEGFGFE+TYQ +NM+YV+YG IG+L +K
Sbjct:   75 EAAAQLIKTTMDKKFGAAWHCVIGEGFGFEITYQAKNMVYVYYGSIGILAYK 126
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BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Match: A0A7S2FKD5_9STRA (Dynein light chain n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FKD5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.890e-21
Identity = 35/50 (70.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    7 AAQVIKNSMDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIGVLTFK 156
            AA+ IK+ MDKKFG  WHCAIGEGFGF+VTYQQ+NM+Y++YGQ+G+L +K
Sbjct:   57 AAKAIKDQMDKKFGTLWHCAIGEGFGFDVTYQQKNMMYIYYGQVGILIYK 106
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BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Match: A0A8J2SIE6_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIE6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.210e-20
Identity = 34/52 (65.38%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 QAAAQVIKNSMDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIGVLTFK 156
            +A  +++K +MD+K+G  WHCAIGEGFGF+VTYQQ NMIYV+YG+IG+L FK
Sbjct:   59 EAMCKIVKETMDRKYGPQWHCAIGEGFGFDVTYQQPNMIYVYYGKIGILLFK 110
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BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Match: A0A7S3JUA7_9STRA (Dynein light chain n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUA7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.210e-20
Identity = 35/52 (67.31%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 QAAAQVIKNSMDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIGVLTFK 156
            +A +++IK +MDKK+G  WHCAIGEGFGF++TYQQ NMIYV+YG+IGVL +K
Sbjct:   59 EAMSKMIKEAMDKKYGPQWHCAIGEGFGFDITYQQPNMIYVYYGKIGVLLYK 110
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BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Match: F0YB41_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB41_AURAN)

HSP 1 Score: 84.3 bits (207), Expect = 1.440e-20
Identity = 33/49 (67.35%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   10 AQVIKNSMDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIGVLTFK 156
            +++IK +MDKK+G  WHCAIGEGFGF++TYQQ NMIYV+YG+IG+L +K
Sbjct:    2 SKMIKEAMDKKYGPQWHCAIGEGFGFDITYQQPNMIYVYYGKIGILLYK 50
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BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Match: A0A0N7L6I6_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L6I6_PLAHL)

HSP 1 Score: 85.5 bits (210), Expect = 5.100e-20
Identity = 35/52 (67.31%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 QAAAQVIKNSMDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIGVLTFK 156
            +AAAQ+IK SMDKKFG+SWHC IGEG+GF+V+YQQ++M+Y++ G+IGVL +K
Sbjct:   87 EAAAQLIKQSMDKKFGSSWHCFIGEGYGFDVSYQQRHMLYMYVGEIGVLVYK 138
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BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Match: A0A6T5VUC3_9STRA (Dynein light chain (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VUC3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.490e-20
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 QAAAQVIKNSMDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIG 141
            +A+AQ+IK ++DKKFGASWHC IGEGFGFE+TYQ +NMIYV+YG IG
Sbjct:   56 EASAQLIKATLDKKFGASWHCVIGEGFGFEITYQSKNMIYVYYGNIG 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206747.5919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG8_ECTSI2.010e-2890.38Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A836CH10_9STRA2.030e-2578.85Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482UU53_9ARCH1.070e-2267.31Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A812X8N6_SYMMI1.400e-2271.15Dynein light chain n=1 Tax=Symbiodinium microadria... [more]
A0A7S2FKD5_9STRA1.890e-2170.00Dynein light chain n=1 Tax=Dictyocha speculum TaxI... [more]
A0A8J2SIE6_9STRA1.210e-2065.38Dynein light chain n=1 Tax=Pelagomonas calceolata ... [more]
A0A7S3JUA7_9STRA1.210e-2067.31Dynein light chain n=1 Tax=Aureoumbra lagunensis T... [more]
F0YB41_AURAN1.440e-2067.35Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A0N7L6I6_PLAHL5.100e-2067.31Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A6T5VUC3_9STRA5.490e-2074.47Dynein light chain (Fragment) n=1 Tax=Chromulina n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206747contigH-elongata_contig206747:250..408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue5.4e-17
Seed eggNOG ortholog2880.D7FHG8
KEGG koko:K10412,ko:K10418
KEGG Pathwayko04962,ko05016,map04962,map05016
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDynein light chain 4, axonemal
Ec32 orthologEc-25_002460.1
Exons1
Model size159
Cds size129
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.0194805-CDS-H-elongata_contig206747:249..3781622930156.0194805-CDS-H-elongata_contig206747:249..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206747 250..378 -
1691679302.5283167-CDS-H-elongata_contig206747:249..3781691679302.5283167-CDS-H-elongata_contig206747:249..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206747 250..378 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.0342736-UTR-H-elongata_contig206747:378..4081622930156.0342736-UTR-H-elongata_contig206747:378..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig206747 379..408 -
1691679302.5403433-UTR-H-elongata_contig206747:378..4081691679302.5403433-UTR-H-elongata_contig206747:378..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig206747 379..408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206747.5919.1prot_H-elongata_contig206747.5919.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206747 250..378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206747.5919.1

>prot_H-elongata_contig206747.5919.1 ID=prot_H-elongata_contig206747.5919.1|Name=mRNA_H-elongata_contig206747.5919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MDKKFGASWHCAIGEGFGFEVTYQQQNMIYVFYGQIGVLTFK*
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mRNA from alignment at H-elongata_contig206747:250..408-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206747.5919.1 ID=mRNA_H-elongata_contig206747.5919.1|Name=mRNA_H-elongata_contig206747.5919.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig206747:250..408- (Himanthalia elongata Himel1 dioecious)
CAGGCTGCGGCACAGGTTATCAAGAATTCAATGGACAAGAAATTCGGGGC
GTCGTGGCACTGCGCGATTGGCGAGGGATTCGGCTTCGAGGTCACCTATC
AGCAGCAAAACATGATCTACGTTTTCTACGGCCAGATAGGGGTGCTCACG
TTCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig206747:250..408-

>mRNA_H-elongata_contig206747.5919.1 ID=mRNA_H-elongata_contig206747.5919.1|Name=mRNA_H-elongata_contig206747.5919.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig206747:250..408- (Himanthalia elongata Himel1 dioecious)
ATGGACAAGAAATTCGGGGCGTCGTGGCACTGCGCGATTGGCGAGGGATT
CGGCTTCGAGGTCACCTATCAGCAGCAAAACATGATCTACGTTTTCTACG
GCCAGATAGGGGTGCTCACGTTCAAGTGAATGGACAAGAAATTCGGGGCG
TCGTGGCACTGCGCGATTGGCGAGGGATTCGGCTTCGAGGTCACCTATCA
GCAGCAAAACATGATCTACGTTTTCTACGGCCAGATAGGGGTGCTCACGT
TCAAGTGA
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