mRNA_H-elongata_contig20671.5916.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: D8LJE9_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJE9_ECTSI) HSP 1 Score: 422 bits (1086), Expect = 7.090e-141 Identity = 252/335 (75.22%), Postives = 274/335 (81.79%), Query Frame = 1
Query: 13 SSVSYYSRRKEHAAAKGVLVEGESSKHVLSEESYDEYVPLKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGNKEASAGSGQTGTDGEKKPRTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
+SV Y RRKE +AA G E+ +E YDEY+PLKER XXXXXXXXXXXXXXXXXXXXXXXXX A A +G G +G KKPRTLLEA+K+LKKATAN+DA TI+QMRAKEEEHRML+EANQVQTNALMSA EVA+GTRYTEALTTSWRPPK+YRDMTEE+CDKLREKWSILVDGE VPPPI+SFREMKLP+ MLAAL+ KGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLP+VGGEGPFG+ILCPSRELARQTFDV+DYFCKHL RGGFPELRT+LCIG
Sbjct: 4 TSVKLYGRRKEESAAAGKDARLEAL--AGEDEGYDEYIPLKERRRREAERRAGKLGKNRRDRERARLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAAEAAAGP-GAEGSKKPRTLLEAAKELKKATANLDAGTIKQMRAKEEEHRMLKEANQVQTNALMSAAEVAKGTRYTEALTTSWRPPKYYRDMTEEDCDKLREKWSILVDGEKVPPPIKSFREMKLPDPMLAALEAKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIG 335
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A836CIR5_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR5_9STRA) HSP 1 Score: 338 bits (867), Expect = 5.320e-109 Identity = 167/236 (70.76%), Postives = 203/236 (86.02%), Query Frame = 1
Query: 310 EASAGSGQTGTDGEKKPRTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
+ SAG+ G D KPRTLL+A+K+LKKAT +DA T+R ++ ++EE R+L EA+QVQTNALMSA EVAQG RYT+ L TSWRPP++ R+M+EE +LR+KW ILV+GE++ PI+SF+EMK P +L ALDEKGIKRPTPIQVQG+PVAL GRDMIGIAFTGSGKTVTFS+PL+MLALEEEMKLP+VGGEGPFGIILCPSRELARQTF+V++YFC +L+RGG+PELR ILCIG
Sbjct: 18 DVSAGAEADGAD---KPRTLLDAAKELKKATEALDARTLRMVKQQDEESRVLAEASQVQTNALMSAAEVAQGFRYTDTLKTSWRPPRYLREMSEETRAQLRDKWHILVEGENIVAPIKSFKEMKFPPPVLQALDEKGIKRPTPIQVQGIPVALEGRDMIGIAFTGSGKTVTFSLPLVMLALEEEMKLPVVGGEGPFGIILCPSRELARQTFEVVEYFCSYLQRGGYPELRCILCIG 250
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7S2Y022_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y022_9STRA) HSP 1 Score: 278 bits (712), Expect = 1.450e-88 Identity = 132/218 (60.55%), Postives = 174/218 (79.82%), Query Frame = 1
Query: 367 LLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGG-FPELRTILCIG 1017
LL+ + ++KK MD ++ + + EE RML+EANQVQTNALMSA E A+G RY+E+L T WR P + R + E+ LR+KW IL++G+D+PPPI++F+EMK P+ +L AL +KGI+RPTPIQVQG+PV LSGRDMIGIAFTGSGKTVTF +PLIMLALEEE KLP++GGEGPFG++LCPSRELARQT++V+D++C L + G +P LR +L +G
Sbjct: 79 LLDQAAEIKKNLKKMDTKKLKMSQQQNEESRMLKEANQVQTNALMSAAERAEGLRYSESLKTGWRAPTYIRKLPEDYHQSLRDKWHILIEGDDLPPPIKTFKEMKFPQPLLTALVDKGIRRPTPIQVQGIPVILSGRDMIGIAFTGSGKTVTFGLPLIMLALEEETKLPLIGGEGPFGMVLCPSRELARQTWEVLDWYCDKLAQAGRYPRLRCLLVVG 296
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7S3XUS9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUS9_HETAK) HSP 1 Score: 279 bits (714), Expect = 1.790e-85 Identity = 132/223 (59.19%), Postives = 180/223 (80.72%), Query Frame = 1
Query: 349 EKKPRTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
E++ + L + + +++K A++D ++ R ++EE RML+E+++VQTNAL SA E A+GT Y + + T WR P++ + E+ KLR+KW IL +GED+PPPI+SF+EMK P+ +L AL EKGI+RPTPIQVQG+P L+GRDMIGIAFTGSGKTVTFS+PL+MLALEEEMKLP+VGGEGP+GIILCPSRELARQT++V+++F + L RGG+P LRT+L +G
Sbjct: 89 EEQRKILFDQAAEMRKFNASLDQRKLKMSRQEQEELRMLQESSRVQTNALQSAKERAEGTTYKDVIRTGWRAPRYITALGEDYHQKLRDKWHILTEGEDMPPPIKSFKEMKFPQPILDALLEKGIRRPTPIQVQGIPCVLAGRDMIGIAFTGSGKTVTFSVPLLMLALEEEMKLPLVGGEGPYGIILCPSRELARQTYEVVEFFAERLGRGGYPRLRTLLVMG 311
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7S2SHH4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHH4_9STRA) HSP 1 Score: 280 bits (715), Expect = 2.010e-85 Identity = 132/219 (60.27%), Postives = 174/219 (79.45%), Query Frame = 1
Query: 364 TLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRG-GFPELRTILCIG 1017
TLL+ + +++ NMD +R ++EE MLREAN+VQTN+LMSA E+AQG RY +++ T WRPP H R M+ ++ LR+KW I+ +GED+PPPI+SF++M+ PE ++ AL GIKRPTPIQVQG+PVALSGRDMIGIAFTGSGKT+TF +PLIMLALEEE +LP+ GGEGPFG+ILCPSRELARQT+ V+D +C+ + +G G+P LRT+L +G
Sbjct: 110 TLLDEADAVREEQKNMDVKELRLAAQRKEEEWMLREANRVQTNSLMSAAEIAQGKRYDKSIETGWRPPAHIRGMSSQQAAALRKKWYIIAEGEDIPPPIKSFKDMRFPEPVITALAANGIKRPTPIQVQGIPVALSGRDMIGIAFTGSGKTITFCLPLIMLALEEEKRLPLEGGEGPFGVILCPSRELARQTWQVLDRYCEAMGQGQGYPRLRTVLVVG 328
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: W7U850_9STRA (Dead deah box rna helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U850_9STRA) HSP 1 Score: 276 bits (706), Expect = 2.740e-84 Identity = 129/219 (58.90%), Postives = 170/219 (77.63%), Query Frame = 1
Query: 361 RTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
R+LLE ++++KK +MD ++ K++E R+L EANQVQTNAL SA E AQG +Y+++L T W PP H R M++ +C R+KW I+ +G D+PPPI++FR+MK P ++ A+ KGI +PTPIQVQG+PV LSGRDM+GIAFTGSGKT+TF +PL+MLAL EE K+P+ GGEGP GIILCPSRELA QTF+V+DY+C+ L RGGFP R +LCIG
Sbjct: 92 RSLLEVTEEMKKKREHMDPTLLKLEAQKQQEQRILGEANQVQTNALQSAVERAQGVQYSQSLKTGWTPPSHVRAMSKADCAAFRKKWHIICEGVDLPPPIKNFRDMKFPAPIMEAMARKGITKPTPIQVQGLPVLLSGRDMVGIAFTGSGKTMTFGLPLVMLALAEEKKMPLEGGEGPVGIILCPSRELAGQTFEVLDYYCQALGRGGFPRPRALLCIG 310
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7R9UA62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA62_9STRA) HSP 1 Score: 274 bits (701), Expect = 6.630e-84 Identity = 135/218 (61.93%), Postives = 173/218 (79.36%), Query Frame = 1
Query: 364 TLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
+LL+ + L + + A ++ + E R+LREA+QV TNAL S E+A+G RYTEAL TSWRPP++YRD+ E+E ++R+KW ILV+GE VPPPI++FREMKLPE++LAAL+ +GIKRPTPIQVQG+PVA SGRDMIGIAFTGSGKT+TFS+PLIM ALEEE+KLP+ EGP G+ILCPSRELARQT +V++ +CK L G P LRT+L +G
Sbjct: 86 SLLDTHETLLEKREMLGAAAVKVTEQESAEDRLLREASQVATNALQSRQEIAKGARYTEALKTSWRPPRYYRDLPEDEVVQMRKKWHILVEGEAVPPPIKTFREMKLPEAILAALEGRGIKRPTPIQVQGLPVAFSGRDMIGIAFTGSGKTITFSLPLIMHALEEEVKLPLEPTEGPVGVILCPSRELARQTHEVVETYCKALSDRGHPRLRTLLVVG 303
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7S2AYF5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AYF5_9STRA) HSP 1 Score: 267 bits (682), Expect = 2.110e-83 Identity = 127/219 (57.99%), Postives = 169/219 (77.17%), Query Frame = 1
Query: 361 RTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
RTLL+ + +L++ MD ++ + EEE+ MLREAN+VQTNAL SATE+A G R+ +++ T WRPP H R M+E + LR+KW I+ +GED+P PI+SF++M+ P+ ++ L + GIKRPTPIQVQG+P LSGRDMIGIAFTGSGKT+TF +PLIMLALEEE +LP+ GGEGPFG+ILCPSRELARQT++V+D +C+ L G LRT+L +G
Sbjct: 176 RTLLDEADELRELHKTMDVRALKLAKQSEEENWMLREANRVQTNALQSATEIAAGKRFDKSIETGWRPPSHIRAMSEAKAAVLRKKWFIIAEGEDIPRPIKSFKDMRFPDLLVNHLAKNGIKRPTPIQVQGIPTVLSGRDMIGIAFTGSGKTITFCLPLIMLALEEENRLPLKGGEGPFGLILCPSRELARQTWEVLDEYCEALATDGGTRLRTVLVVG 394
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7S1XQX1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQX1_9STRA) HSP 1 Score: 271 bits (694), Expect = 1.710e-82 Identity = 131/219 (59.82%), Postives = 173/219 (79.00%), Query Frame = 1
Query: 361 RTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
++LL+A L + ANMDA ++ + + E ++LREANQV TNALMS E+A+G R+TE+L TSWR P++YR+ +EEE LR+KW I+V+GE VPPPIR+FREMK+P +++ AL GIKRPTPIQVQG+PVA SGRDMIGIAFTGSGKT+TFS+P I+ +LEEEMKLP+ EGP +ILCPSRELARQT++V + +C L GG+P+LR++L +G
Sbjct: 95 QSLLDAHDALAEERANMDATAVKVDKQESAEEQLLREANQVSTNALMSKAEIARGARFTESLETSWRAPRYYREKSEEELAALRKKWHIIVEGETVPPPIRTFREMKMPRALVDALAGNGIKRPTPIQVQGLPVAFSGRDMIGIAFTGSGKTITFSLPAILHSLEEEMKLPVEPTEGPVAVILCPSRELARQTYEVCERYCGALASGGWPKLRSLLVVG 313
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A482RZM3_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZM3_9ARCH) HSP 1 Score: 259 bits (662), Expect = 2.270e-79 Identity = 122/219 (55.71%), Postives = 169/219 (77.17%), Query Frame = 1
Query: 361 RTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
++LL+ + +L++ A + I++ + + E +L+EANQVQTNAL S E+A G RYTE++TT+WRPP++ + +E E D++R+KW IL++G+ VPPPI+SFREMKLP +L A+ K I RPTPIQVQG+P LSGRD++GIAFTGSGKT+TFS+PLIM ALEEE +P+ GGEGP G+ILCPSRELARQT++++DY+ + + + ELR LCIG
Sbjct: 83 KSLLDEAAELRRQKATLSTGDIKKQQQEYSELLLLKEANQVQTNALQSNEEIATGMRYTESMTTTWRPPRYIAERSESENDEVRKKWHILIEGDHVPPPIKSFREMKLPACLLQAMSLKNITRPTPIQVQGLPALLSGRDIVGIAFTGSGKTLTFSVPLIMFALEEERNMPLEGGEGPVGLILCPSRELARQTYEIVDYYMQIIYKDLHVELRAALCIG 301 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20671.5916.1 >prot_H-elongata_contig20671.5916.1 ID=prot_H-elongata_contig20671.5916.1|Name=mRNA_H-elongata_contig20671.5916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=339bp MSVKSSVSYYSRRKEHAAAKGVLVEGESSKHVLSEESYDEYVPLKERRRRback to top mRNA from alignment at H-elongata_contig20671:1322..4261- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20671.5916.1 ID=mRNA_H-elongata_contig20671.5916.1|Name=mRNA_H-elongata_contig20671.5916.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2940bp|location=Sequence derived from alignment at H-elongata_contig20671:1322..4261- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20671:1322..4261- >mRNA_H-elongata_contig20671.5916.1 ID=mRNA_H-elongata_contig20671.5916.1|Name=mRNA_H-elongata_contig20671.5916.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2034bp|location=Sequence derived from alignment at H-elongata_contig20671:1322..4261- (Himanthalia elongata Himel1 dioecious)back to top |