mRNA_H-elongata_contig20671.5916.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20671.5916.1
Unique NamemRNA_H-elongata_contig20671.5916.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: D8LJE9_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJE9_ECTSI)

HSP 1 Score: 422 bits (1086), Expect = 7.090e-141
Identity = 252/335 (75.22%), Postives = 274/335 (81.79%), Query Frame = 1
Query:   13 SSVSYYSRRKEHAAAKGVLVEGESSKHVLSEESYDEYVPLKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGNKEASAGSGQTGTDGEKKPRTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
            +SV  Y RRKE +AA G     E+      +E YDEY+PLKER                         XXXXXXXXXXXXXXXXXXXXXXXXX       A A +G  G +G KKPRTLLEA+K+LKKATAN+DA TI+QMRAKEEEHRML+EANQVQTNALMSA EVA+GTRYTEALTTSWRPPK+YRDMTEE+CDKLREKWSILVDGE VPPPI+SFREMKLP+ MLAAL+ KGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLP+VGGEGPFG+ILCPSRELARQTFDV+DYFCKHL RGGFPELRT+LCIG
Sbjct:    4 TSVKLYGRRKEESAAAGKDARLEAL--AGEDEGYDEYIPLKERRRREAERRAGKLGKNRRDRERARLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAAEAAAGP-GAEGSKKPRTLLEAAKELKKATANLDAGTIKQMRAKEEEHRMLKEANQVQTNALMSAAEVAKGTRYTEALTTSWRPPKYYRDMTEEDCDKLREKWSILVDGEKVPPPIKSFREMKLPDPMLAALEAKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIG 335          
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A836CIR5_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR5_9STRA)

HSP 1 Score: 338 bits (867), Expect = 5.320e-109
Identity = 167/236 (70.76%), Postives = 203/236 (86.02%), Query Frame = 1
Query:  310 EASAGSGQTGTDGEKKPRTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
            + SAG+   G D   KPRTLL+A+K+LKKAT  +DA T+R ++ ++EE R+L EA+QVQTNALMSA EVAQG RYT+ L TSWRPP++ R+M+EE   +LR+KW ILV+GE++  PI+SF+EMK P  +L ALDEKGIKRPTPIQVQG+PVAL GRDMIGIAFTGSGKTVTFS+PL+MLALEEEMKLP+VGGEGPFGIILCPSRELARQTF+V++YFC +L+RGG+PELR ILCIG
Sbjct:   18 DVSAGAEADGAD---KPRTLLDAAKELKKATEALDARTLRMVKQQDEESRVLAEASQVQTNALMSAAEVAQGFRYTDTLKTSWRPPRYLREMSEETRAQLRDKWHILVEGENIVAPIKSFKEMKFPPPVLQALDEKGIKRPTPIQVQGIPVALEGRDMIGIAFTGSGKTVTFSLPLVMLALEEEMKLPVVGGEGPFGIILCPSRELARQTFEVVEYFCSYLQRGGYPELRCILCIG 250          
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7S2Y022_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y022_9STRA)

HSP 1 Score: 278 bits (712), Expect = 1.450e-88
Identity = 132/218 (60.55%), Postives = 174/218 (79.82%), Query Frame = 1
Query:  367 LLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGG-FPELRTILCIG 1017
            LL+ + ++KK    MD   ++  + + EE RML+EANQVQTNALMSA E A+G RY+E+L T WR P + R + E+    LR+KW IL++G+D+PPPI++F+EMK P+ +L AL +KGI+RPTPIQVQG+PV LSGRDMIGIAFTGSGKTVTF +PLIMLALEEE KLP++GGEGPFG++LCPSRELARQT++V+D++C  L + G +P LR +L +G
Sbjct:   79 LLDQAAEIKKNLKKMDTKKLKMSQQQNEESRMLKEANQVQTNALMSAAERAEGLRYSESLKTGWRAPTYIRKLPEDYHQSLRDKWHILIEGDDLPPPIKTFKEMKFPQPLLTALVDKGIRRPTPIQVQGIPVILSGRDMIGIAFTGSGKTVTFGLPLIMLALEEETKLPLIGGEGPFGMVLCPSRELARQTWEVLDWYCDKLAQAGRYPRLRCLLVVG 296          
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7S3XUS9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUS9_HETAK)

HSP 1 Score: 279 bits (714), Expect = 1.790e-85
Identity = 132/223 (59.19%), Postives = 180/223 (80.72%), Query Frame = 1
Query:  349 EKKPRTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
            E++ + L + + +++K  A++D   ++  R ++EE RML+E+++VQTNAL SA E A+GT Y + + T WR P++   + E+   KLR+KW IL +GED+PPPI+SF+EMK P+ +L AL EKGI+RPTPIQVQG+P  L+GRDMIGIAFTGSGKTVTFS+PL+MLALEEEMKLP+VGGEGP+GIILCPSRELARQT++V+++F + L RGG+P LRT+L +G
Sbjct:   89 EEQRKILFDQAAEMRKFNASLDQRKLKMSRQEQEELRMLQESSRVQTNALQSAKERAEGTTYKDVIRTGWRAPRYITALGEDYHQKLRDKWHILTEGEDMPPPIKSFKEMKFPQPILDALLEKGIRRPTPIQVQGIPCVLAGRDMIGIAFTGSGKTVTFSVPLLMLALEEEMKLPLVGGEGPYGIILCPSRELARQTYEVVEFFAERLGRGGYPRLRTLLVMG 311          
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7S2SHH4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHH4_9STRA)

HSP 1 Score: 280 bits (715), Expect = 2.010e-85
Identity = 132/219 (60.27%), Postives = 174/219 (79.45%), Query Frame = 1
Query:  364 TLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRG-GFPELRTILCIG 1017
            TLL+ +  +++   NMD   +R    ++EE  MLREAN+VQTN+LMSA E+AQG RY +++ T WRPP H R M+ ++   LR+KW I+ +GED+PPPI+SF++M+ PE ++ AL   GIKRPTPIQVQG+PVALSGRDMIGIAFTGSGKT+TF +PLIMLALEEE +LP+ GGEGPFG+ILCPSRELARQT+ V+D +C+ + +G G+P LRT+L +G
Sbjct:  110 TLLDEADAVREEQKNMDVKELRLAAQRKEEEWMLREANRVQTNSLMSAAEIAQGKRYDKSIETGWRPPAHIRGMSSQQAAALRKKWYIIAEGEDIPPPIKSFKDMRFPEPVITALAANGIKRPTPIQVQGIPVALSGRDMIGIAFTGSGKTITFCLPLIMLALEEEKRLPLEGGEGPFGVILCPSRELARQTWQVLDRYCEAMGQGQGYPRLRTVLVVG 328          
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: W7U850_9STRA (Dead deah box rna helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U850_9STRA)

HSP 1 Score: 276 bits (706), Expect = 2.740e-84
Identity = 129/219 (58.90%), Postives = 170/219 (77.63%), Query Frame = 1
Query:  361 RTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
            R+LLE ++++KK   +MD   ++    K++E R+L EANQVQTNAL SA E AQG +Y+++L T W PP H R M++ +C   R+KW I+ +G D+PPPI++FR+MK P  ++ A+  KGI +PTPIQVQG+PV LSGRDM+GIAFTGSGKT+TF +PL+MLAL EE K+P+ GGEGP GIILCPSRELA QTF+V+DY+C+ L RGGFP  R +LCIG
Sbjct:   92 RSLLEVTEEMKKKREHMDPTLLKLEAQKQQEQRILGEANQVQTNALQSAVERAQGVQYSQSLKTGWTPPSHVRAMSKADCAAFRKKWHIICEGVDLPPPIKNFRDMKFPAPIMEAMARKGITKPTPIQVQGLPVLLSGRDMVGIAFTGSGKTMTFGLPLVMLALAEEKKMPLEGGEGPVGIILCPSRELAGQTFEVLDYYCQALGRGGFPRPRALLCIG 310          
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7R9UA62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA62_9STRA)

HSP 1 Score: 274 bits (701), Expect = 6.630e-84
Identity = 135/218 (61.93%), Postives = 173/218 (79.36%), Query Frame = 1
Query:  364 TLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
            +LL+  + L +    + A  ++    +  E R+LREA+QV TNAL S  E+A+G RYTEAL TSWRPP++YRD+ E+E  ++R+KW ILV+GE VPPPI++FREMKLPE++LAAL+ +GIKRPTPIQVQG+PVA SGRDMIGIAFTGSGKT+TFS+PLIM ALEEE+KLP+   EGP G+ILCPSRELARQT +V++ +CK L   G P LRT+L +G
Sbjct:   86 SLLDTHETLLEKREMLGAAAVKVTEQESAEDRLLREASQVATNALQSRQEIAKGARYTEALKTSWRPPRYYRDLPEDEVVQMRKKWHILVEGEAVPPPIKTFREMKLPEAILAALEGRGIKRPTPIQVQGLPVAFSGRDMIGIAFTGSGKTITFSLPLIMHALEEEVKLPLEPTEGPVGVILCPSRELARQTHEVVETYCKALSDRGHPRLRTLLVVG 303          
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7S2AYF5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AYF5_9STRA)

HSP 1 Score: 267 bits (682), Expect = 2.110e-83
Identity = 127/219 (57.99%), Postives = 169/219 (77.17%), Query Frame = 1
Query:  361 RTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
            RTLL+ + +L++    MD   ++  +  EEE+ MLREAN+VQTNAL SATE+A G R+ +++ T WRPP H R M+E +   LR+KW I+ +GED+P PI+SF++M+ P+ ++  L + GIKRPTPIQVQG+P  LSGRDMIGIAFTGSGKT+TF +PLIMLALEEE +LP+ GGEGPFG+ILCPSRELARQT++V+D +C+ L   G   LRT+L +G
Sbjct:  176 RTLLDEADELRELHKTMDVRALKLAKQSEEENWMLREANRVQTNALQSATEIAAGKRFDKSIETGWRPPSHIRAMSEAKAAVLRKKWFIIAEGEDIPRPIKSFKDMRFPDLLVNHLAKNGIKRPTPIQVQGIPTVLSGRDMIGIAFTGSGKTITFCLPLIMLALEEENRLPLKGGEGPFGLILCPSRELARQTWEVLDEYCEALATDGGTRLRTVLVVG 394          
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A7S1XQX1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQX1_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.710e-82
Identity = 131/219 (59.82%), Postives = 173/219 (79.00%), Query Frame = 1
Query:  361 RTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
            ++LL+A   L +  ANMDA  ++  + +  E ++LREANQV TNALMS  E+A+G R+TE+L TSWR P++YR+ +EEE   LR+KW I+V+GE VPPPIR+FREMK+P +++ AL   GIKRPTPIQVQG+PVA SGRDMIGIAFTGSGKT+TFS+P I+ +LEEEMKLP+   EGP  +ILCPSRELARQT++V + +C  L  GG+P+LR++L +G
Sbjct:   95 QSLLDAHDALAEERANMDATAVKVDKQESAEEQLLREANQVSTNALMSKAEIARGARFTESLETSWRAPRYYREKSEEELAALRKKWHIIVEGETVPPPIRTFREMKMPRALVDALAGNGIKRPTPIQVQGLPVAFSGRDMIGIAFTGSGKTITFSLPAILHSLEEEMKLPVEPTEGPVAVILCPSRELARQTYEVCERYCGALASGGWPKLRSLLVVG 313          
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Match: A0A482RZM3_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZM3_9ARCH)

HSP 1 Score: 259 bits (662), Expect = 2.270e-79
Identity = 122/219 (55.71%), Postives = 169/219 (77.17%), Query Frame = 1
Query:  361 RTLLEASKDLKKATANMDANTIRQMRAKEEEHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFGIILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG 1017
            ++LL+ + +L++  A +    I++ + +  E  +L+EANQVQTNAL S  E+A G RYTE++TT+WRPP++  + +E E D++R+KW IL++G+ VPPPI+SFREMKLP  +L A+  K I RPTPIQVQG+P  LSGRD++GIAFTGSGKT+TFS+PLIM ALEEE  +P+ GGEGP G+ILCPSRELARQT++++DY+ + + +    ELR  LCIG
Sbjct:   83 KSLLDEAAELRRQKATLSTGDIKKQQQEYSELLLLKEANQVQTNALQSNEEIATGMRYTESMTTTWRPPRYIAERSESENDEVRKKWHILIEGDHVPPPIKSFREMKLPACLLQAMSLKNITRPTPIQVQGLPALLSGRDIVGIAFTGSGKTLTFSVPLIMFALEEERNMPLEGGEGPVGLILCPSRELARQTYEIVDYYMQIIYKDLHVELRAALCIG 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20671.5916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJE9_ECTSI7.090e-14175.22DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A836CIR5_9STRA5.320e-10970.76RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2Y022_9STRA1.450e-8860.55Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3XUS9_HETAK1.790e-8559.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SHH4_9STRA2.010e-8560.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U850_9STRA2.740e-8458.90Dead deah box rna helicase n=2 Tax=Monodopsidaceae... [more]
A0A7R9UA62_9STRA6.630e-8461.93Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2AYF5_9STRA2.110e-8357.99Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1XQX1_9STRA1.710e-8259.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A482RZM3_9ARCH2.270e-7955.71DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20671contigH-elongata_contig20671:1322..4261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.1
Seed ortholog evalue1.9e-117
Seed eggNOG ortholog2880.D8LJE9
Preferred nameDDX41
KEGG koko:K13116
GOsGO:0000375,GO:0000377,GO:0000398,GO:0001817,GO:0001819,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008219,GO:0008283,GO:0008380,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010501,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012501,GO:0012505,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032502,GO:0032991,GO:0033036,GO:0034097,GO:0034641,GO:0035456,GO:0035458,GO:0035770,GO:0036464,GO:0042221,GO:0042623,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0065007,GO:0070013,GO:0070035,GO:0070887,GO:0071013,GO:0071310,GO:0071345,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0098542,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATP-dependent RNA helicase activity
EggNOG OGsKOG0341@1,KOG0341@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-06_010060.1
Exons5
Model size1019
Cds size1017
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20671.5916.1prot_H-elongata_contig20671.5916.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20671 1322..4261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.7261858-CDS-H-elongata_contig20671:1321..14801622930155.7261858-CDS-H-elongata_contig20671:1321..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 1322..1480 -
1691679302.396236-CDS-H-elongata_contig20671:1321..14801691679302.396236-CDS-H-elongata_contig20671:1321..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 1322..1480 -
1622930155.7379124-CDS-H-elongata_contig20671:1665..17791622930155.7379124-CDS-H-elongata_contig20671:1665..1779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 1666..1779 -
1691679302.4101472-CDS-H-elongata_contig20671:1665..17791691679302.4101472-CDS-H-elongata_contig20671:1665..1779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 1666..1779 -
1622930155.7520244-CDS-H-elongata_contig20671:2115..22231622930155.7520244-CDS-H-elongata_contig20671:2115..2223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 2116..2223 -
1691679302.4177094-CDS-H-elongata_contig20671:2115..22231691679302.4177094-CDS-H-elongata_contig20671:2115..2223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 2116..2223 -
1622930155.7709594-CDS-H-elongata_contig20671:2689..31011622930155.7709594-CDS-H-elongata_contig20671:2689..3101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 2690..3101 -
1691679302.425934-CDS-H-elongata_contig20671:2689..31011691679302.425934-CDS-H-elongata_contig20671:2689..3101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 2690..3101 -
1622930155.7857208-CDS-H-elongata_contig20671:4037..42611622930155.7857208-CDS-H-elongata_contig20671:4037..4261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 4038..4261 -
1691679302.433747-CDS-H-elongata_contig20671:4037..42611691679302.433747-CDS-H-elongata_contig20671:4037..4261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20671 4038..4261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20671.5916.1

>prot_H-elongata_contig20671.5916.1 ID=prot_H-elongata_contig20671.5916.1|Name=mRNA_H-elongata_contig20671.5916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=339bp
MSVKSSVSYYSRRKEHAAAKGVLVEGESSKHVLSEESYDEYVPLKERRRR
EEKRRAGKLGNNRREKERELLEKEREEDERIASKRAAAAMSLAAAADSEG
GNKEASAGSGQTGTDGEKKPRTLLEASKDLKKATANMDANTIRQMRAKEE
EHRMLREANQVQTNALMSATEVAQGTRYTEALTTSWRPPKHYRDMTEEEC
DKLREKWSILVDGEDVPPPIRSFREMKLPESMLAALDEKGIKRPTPIQVQ
GVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPIVGGEGPFG
IILCPSRELARQTFDVMDYFCKHLRRGGFPELRTILCIG
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mRNA from alignment at H-elongata_contig20671:1322..4261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20671.5916.1 ID=mRNA_H-elongata_contig20671.5916.1|Name=mRNA_H-elongata_contig20671.5916.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2940bp|location=Sequence derived from alignment at H-elongata_contig20671:1322..4261- (Himanthalia elongata Himel1 dioecious)
ATGTCAGTGAAGTCGTCGGTTTCGTATTACTCGCGGAGGAAAGAACACGC AGCAGCAAAGGGCGTGCTTGTCGAGGGTGAGAGCAGCAAGCACGTGTTGT CCGAAGAATCCTACGATGAATACGTGCCGCTGAAGGAGCGCCGGAGGAGG GAGGAGAAGCGGAGAGCTGGCAAGCTTGGGAATAACAGGAGGGAGAAGGA GCGCGAGCTGCTTGAGAAAGAGAGGTTCGGAACGGCATTGGGACGCGTGG GATCTCAGGGTTGTGGGGGGGGAGGGGAAAGGTTTCTATGAAAAAATATA TAAACTCATTGAAACCCTCCAAACATCCACCCCTTCTTAGCACTGTGAGA GGTGCAGTCCAGGGGACCAACTATCGTCAGGTTCGACTATGTACATTGTT ATTGTTGTTTTTGTTGTTGTTGGTCACATATTTAGCGGAAGGTCAACTGG ATTTGGCTGCCTTCTACTCGTGGTCAGCTGAACAGGGAAAATAATTTTCC CCAGTCCCCGTTTACTACATTTGAACACAAAATCGTCATATGTGACTATT CGTGTTCCTCAATAGTAAATGCATCGAGTCGACAGTTAATATGTGCGAGG AGAGCCGCGGTAGGGTGCGAGGAGAGGTTTTGCACAGTTGTGTGCGAGGA GAGCCGCGGTGGGGCGTGCAACCATATTGAAAGACATGCACTGTACCGAT AGAGCCTATTAATAGTACACATCACTGTAAATACCACTATTTAACATCGA TACAAGGGCAAGGATGTGCGGTTCCTCCCACGAGATCGCCTTCGTCTCGA GGCAGTTGCTTCAGTCCGAACGATTTGGCCATGTTCCAGTCGCGACCGCT TGGTTCTCTAGAGCCCGATCTGCTAGGGCTGTCGATGCGAAGGAAAGCGA AGGCAGAGCGTATAGCTCACCGTACACCGCGAGAACAGCGCAGACTTGTG CCGATACGGGATTAGCGTGGGATTTTTTGCCTAATAATATGAGTAGCCCC GTACAAGTGTCCCATCATCCACCAGTCACTATTTTTATTCAGATTCAGAC AAGGTTAGTTGCCCTAGGGCGTCTGCTCCGATTGACGTCGATTGAAGAGC AACACGTCCTAGACTAATTGTCTCCCCCCCCCACATCCCCTCTAAAACCC GCCTGGAAAGGGAGGAAGACGAGCGCATAGCGAGCAAGCGCGCGGCGGCG GCCATGTCATTGGCCGCAGCCGCCGACAGCGAAGGTGGCAATAAAGAGGC GTCGGCGGGGTCAGGACAAACGGGGACGGATGGAGAGAAGAAGCCCCGCA CGCTGCTGGAGGCTTCGAAGGACCTTAAGAAGGCGACGGCCAACATGGAC GCGAACACGATCAGGCAGATGAGGGCTAAGGAAGAGGAGCACCGGATGCT GCGGGAGGCGAACCAGGTGCAGACAAACGCGTTGATGAGCGCCACGGAGG TAGCGCAGGGCACGCGGTACACGGAGGCGCTGACGACCTCCTGGCGGCCT CCGAAGCACTACCGGGACATGACAGAGGAGGAGTGCGACAAGCTCAGGGA AAAGTGGAGCATCCTCGTGGATGTGAGTAGTTCTCTCTAAATACCAGGGC GTTTTTCATAGTACCATCTGTTTTGTCGCTCTTGATCCAGAAGTGTGGCA AAATATCCTAAGTTTCCGAGGAAATAATTTACTGTTTGTTTAGGGTTTAC GGAGGAGGGGGGGTGGGGGGGGGGAGAAACACGCTGCCTCGCCACAGGAG GTTTTTTCCGCCGCAGGAGGGGGCGTCTCTTGACATTGTTTGTTGCGAAG CTCTCCTCGCTGGCCGGTTAAAAAATATCTGGTAGGTGGTTGTGTAATGC ATATTCTCCTACCTACCCATCCCACTTTGCGGCTTTAAAAATAATAATAT GCTTAAGAGGCGAAGGCAGTCGCTCGGTCACGCCCCAAAATATCATTTGG GGTAGCTTTGGGAACCAGGTAGCCACCGCCGCCGTTGCCGACTCCGGCTG ACCTGATGCTGTGCGCTAACCGAACGCGGTTGTCACAGGGGGAGGACGTT CCACCGCCCATAAGGTCGTTCCGCGAGATGAAGCTCCCTGAATCAATGTT GGCTGCCTTAGACGAGAAGGGGATCAAGCGGCCGACACCTATCCAGGTGA TAGCGGATATAAGGGTATGATTTTTTAACCCTCTGGCTGCAAGAATGACG CCATTGTTTTCTTCTTAAATAAAAGGAGACGAGAAAATAAAATGGAACGG TGTTTCTTTGTCCGCGTCAACCAATCAACACAATCGGAGCCGTTTTTGAT TGCTGGAAAAGACTCCTGCCGATTTCCCATTTTCGAGGAACGTTTTTTTT ATATTGAGATAGATGCATCGCGCGGGTATATGTCTCACGGACTGTCGCTT GAGGATATGGATGGCGAAATCGGACTCGACCCTCGTCGGTCCTGCGATCG ATTTACCCTTTCTGCTGCACCGTCGATTGCAGGTTCAAGGGGTCCCGGTC GCGCTCTCCGGGCGAGATATGATCGGCATCGCGTTCACGGGTTCGGGAAA GACCGTAACCTTCAGCATCCCCCTCATCATGCTCGCGCTGGAAGAGGTAA CCACAGAGCTCCTCTTGTTCCTTCGTGTTACACAGCCCACAGCAGCAATT GGCGTCGTCCCGGTTGATAATTATCGATCGTTGTGTGTGAAGATGCGTGG TGCTTAAGCTCAGCGCCGACGTTGTTGCTCCGCCCCATTCCTTTGACTCT TTGTTGCTGTTGCTGCTGTCGTCACTTCCAGGAGATGAAGCTTCCGATCG TCGGGGGGGAGGGACCGTTCGGGATCATCCTGTGCCCCTCGCGAGAGCTG GCGCGGCAAACGTTCGACGTGATGGACTACTTCTGCAAGCACCTCAGGCG GGGGGGCTTCCCGGAGCTGCGCACGATTTTATGCATAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig20671:1322..4261-

>mRNA_H-elongata_contig20671.5916.1 ID=mRNA_H-elongata_contig20671.5916.1|Name=mRNA_H-elongata_contig20671.5916.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2034bp|location=Sequence derived from alignment at H-elongata_contig20671:1322..4261- (Himanthalia elongata Himel1 dioecious)
ATGTCAGTGAAGTCGTCGGTTTCGTATTACTCGCGGAGGAAAGAACACGC
AGCAGCAAAGGGCGTGCTTGTCGAGGGTGAGAGCAGCAAGCACGTGTTGT
CCGAAGAATCCTACGATGAATACGTGCCGCTGAAGGAGCGCCGGAGGAGG
GAGGAGAAGCGGAGAGCTGGCAAGCTTGGGAATAACAGGAGGGAGAAGGA
GCGCGAGCTGCTTGAGAAAGAGAGATGTCAGTGAAGTCGTCGGTTTCGTA
TTACTCGCGGAGGAAAGAACACGCAGCAGCAAAGGGCGTGCTTGTCGAGG
GTGAGAGCAGCAAGCACGTGTTGTCCGAAGAATCCTACGATGAATACGTG
CCGCTGAAGGAGCGCCGGAGGAGGGAGGAGAAGCGGAGAGCTGGCAAGCT
TGGGAATAACAGGAGGGAGAAGGAGCGCGAGCTGCTTGAGAAAGAGAGGG
AGGAAGACGAGCGCATAGCGAGCAAGCGCGCGGCGGCGGCCATGTCATTG
GCCGCAGCCGCCGACAGCGAAGGTGGCAATAAAGAGGCGTCGGCGGGGTC
AGGACAAACGGGGACGGATGGAGAGAAGAAGCCCCGCACGCTGCTGGAGG
CTTCGAAGGACCTTAAGAAGGCGACGGCCAACATGGACGCGAACACGATC
AGGCAGATGAGGGCTAAGGAAGAGGAGCACCGGATGCTGCGGGAGGCGAA
CCAGGTGCAGACAAACGCGTTGATGAGCGCCACGGAGGTAGCGCAGGGCA
CGCGGTACACGGAGGCGCTGACGACCTCCTGGCGGCCTCCGAAGCACTAC
CGGGACATGACAGAGGAGGAGTGCGACAAGCTCAGGGAAAAGTGGAGCAT
CCTCGTGGATGGAGGAAGACGAGCGCATAGCGAGCAAGCGCGCGGCGGCG
GCCATGTCATTGGCCGCAGCCGCCGACAGCGAAGGTGGCAATAAAGAGGC
GTCGGCGGGGTCAGGACAAACGGGGACGGATGGAGAGAAGAAGCCCCGCA
CGCTGCTGGAGGCTTCGAAGGACCTTAAGAAGGCGACGGCCAACATGGAC
GCGAACACGATCAGGCAGATGAGGGCTAAGGAAGAGGAGCACCGGATGCT
GCGGGAGGCGAACCAGGTGCAGACAAACGCGTTGATGAGCGCCACGGAGG
TAGCGCAGGGCACGCGGTACACGGAGGCGCTGACGACCTCCTGGCGGCCT
CCGAAGCACTACCGGGACATGACAGAGGAGGAGTGCGACAAGCTCAGGGA
AAAGTGGAGCATCCTCGTGGATGGGGAGGACGTTCCACCGCCCATAAGGT
CGTTCCGCGAGATGAAGCTCCCTGAATCAATGTTGGCTGCCTTAGACGAG
AAGGGGATCAAGCGGCCGACACCTATCCAGGGGGAGGACGTTCCACCGCC
CATAAGGTCGTTCCGCGAGATGAAGCTCCCTGAATCAATGTTGGCTGCCT
TAGACGAGAAGGGGATCAAGCGGCCGACACCTATCCAGGTTCAAGGGGTC
CCGGTCGCGCTCTCCGGGCGAGATATGATCGGCATCGCGTTCACGGGTTC
GGGAAAGACCGTAACCTTCAGCATCCCCCTCATCATGCTCGCGCTGGAAG
AGGTTCAAGGGGTCCCGGTCGCGCTCTCCGGGCGAGATATGATCGGCATC
GCGTTCACGGGTTCGGGAAAGACCGTAACCTTCAGCATCCCCCTCATCAT
GCTCGCGCTGGAAGAGGAGATGAAGCTTCCGATCGTCGGGGGGGAGGGAC
CGTTCGGGATCATCCTGTGCCCCTCGCGAGAGCTGGCGCGGCAAACGTTC
GACGTGATGGACTACTTCTGCAAGCACCTCAGGCGGGGGGGCTTCCCGGA
GCTGCGCACGATTTTATGCATAGGCGAGATGAAGCTTCCGATCGTCGGGG
GGGAGGGACCGTTCGGGATCATCCTGTGCCCCTCGCGAGAGCTGGCGCGG
CAAACGTTCGACGTGATGGACTACTTCTGCAAGCACCTCAGGCGGGGGGG
CTTCCCGGAGCTGCGCACGATTTTATGCATAGGC
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