mRNA_H-elongata_contig206676.5912.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 159 bits (403), Expect = 5.000e-44 Identity = 95/221 (42.99%), Postives = 132/221 (59.73%), Query Frame = 1
Query: 13 CDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDSIVPEHISARLLKVRVIFKQRAVTTFIVGYAPTETAATCR------KSKFWKELRSTIAEVPASDHLILMIDANACTGRRGEGGGLGDVRSLGPYDRDTLNDNRSRLLACAAEHKLSIVNTVFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRFVR 657
CD I +QETRR+ + +I Y++ SG G K G+ GVG+A++E++ ++G + E IS RL+KVR+ + TF+VGYAPTET T K FW L + I EV + DHL++++DANA TGRR GG D + LG Y RD +N+N RL A++++ S+ NT F TPK GG F K ++RLD+IL+RQ DRRFVR
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVR 226
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 152 bits (385), Expect = 1.010e-42 Identity = 96/225 (42.67%), Postives = 135/225 (60.00%), Query Frame = 1
Query: 1 AKYECDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDSIVPEHISARLLKVRVIFKQRAVTTFIVGYAPTETAATCR------KSKFWKELRSTIAEVPASDHLILMIDANACTGRRGEGGGLGDVRSLGPYDRDTLNDNRSRLLACAAEHKLSIVNTVFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRFVR 657
A +CD I +QETRR + I Y++ SG G K G+ GVG+A++E++ ++G E IS RL+KVR+ + TF+VGYAPTETA K FW L + I EV + DHL++++DANA TGRR +G D + +G Y RD +N+N RLL AA+++LS++NT TPK G ++ + +G KE HR LD+IL+RQ DRR VR
Sbjct: 8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYIRTPK-GVHTFQSSNKG-KEKHR--LDFILMRQTDRRLVR 224
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 155 bits (392), Expect = 3.010e-42 Identity = 93/221 (42.08%), Postives = 131/221 (59.28%), Query Frame = 1
Query: 13 CDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDSIVPEHISARLLKVRVIFKQRAVTTFIVGYAPTETAATCR------KSKFWKELRSTIAEVPASDHLILMIDANACTGRRGEGGGLGDVRSLGPYDRDTLNDNRSRLLACAAEHKLSIVNTVFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRFVR 657
CD I +QETRR+ + ++ Y++ SG G K G+ GVG+A++E++ ++G E I+ RL+KVR+ + TF+VGYAPTET T K FW L I EV + DHL++++DANA TGRR +G D + +G Y RD +N+N RLL A+ ++LS+ NT F TPK GG F K ++RLD+IL+RQ DRRFVR
Sbjct: 12 CDVIGLQETRREGQGSLAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVR 226
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 157 bits (397), Expect = 5.510e-42 Identity = 92/221 (41.63%), Postives = 133/221 (60.18%), Query Frame = 1
Query: 13 CDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDSIVPEHISARLLKVRVIFKQRAVTTFIVGYAPTETAATCR------KSKFWKELRSTIAEVPASDHLILMIDANACTGRRGEGGGLGDVRSLGPYDRDTLNDNRSRLLACAAEHKLSIVNTVFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRFVR 657
CD +QETRR+ + +I Y++ SG G K G+ GVG+A++E++ ++G + E IS RL+KVR+ + TF++GYAPTET T K FW L + I EV + DHL++++DANA TGRR +G D + +G Y RD +N+N RLL A++++LS+ NT F TPK G + KE ++RLD+IL+RQ DRRFVR
Sbjct: 12 CDVTGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGAQHTFQSSNTGKE--KYRLDFILMRQTDRRFVR 226
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 160 bits (406), Expect = 7.190e-42 Identity = 95/221 (42.99%), Postives = 134/221 (60.63%), Query Frame = 1
Query: 13 CDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDSIVPEHISARLLKVRVIFKQRAVTTFIVGYAPTETAATCR------KSKFWKELRSTIAEVPASDHLILMIDANACTGRRGEGGGLGDVRSLGPYDRDTLNDNRSRLLACAAEHKLSIVNTVFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRFVR 657
CD I +QETRR+ + +I Y++ SG G K G+ GVG+A++E++ ++G + E IS RL+KVR+ + TF+VGYAPTET T K FW L + I EV + DHL++++DANA TGRR +G D + +G Y RD +N+N RLL A++++LS+ NT F TPK GG F K ++RLD+IL+RQ DRRFVR
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQTDRRFVR 226
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Match: A0A6H5KZD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD3_9PHAE) HSP 1 Score: 154 bits (390), Expect = 2.600e-41 Identity = 93/221 (42.08%), Postives = 132/221 (59.73%), Query Frame = 1
Query: 13 CDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDSIVPEHISARLLKVRVIFKQRAVTTFIVGYAPTETAATCR------KSKFWKELRSTIAEVPASDHLILMIDANACTGRRGEGGGLGDVRSLGPYDRDTLNDNRSRLLACAAEHKLSIVNTVFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRFVR 657
CD I +QETRR + +I Y++ SG G K G+ GVG+A++E++ ++G + E IS RL+KVR+ V TF+VGYAPTET T K FW L + I EV + HL++++DA+A GRR +G DV+ +G Y RD +N+N R+L A++++LS+ NT F TPK GG F K ++RLD+IL+RQ DRRFVR
Sbjct: 12 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRMQIGHTCVVTFVVGYAPTETVRTTAGGNVKAKDSFWTALDAAIREVHSRVHLVVLMDADARIGRRRDG--CCDVKIMGAYGRDIMNNNAERVLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQTDRRFVR 226
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 157 bits (397), Expect = 2.750e-41 Identity = 94/221 (42.53%), Postives = 132/221 (59.73%), Query Frame = 1
Query: 13 CDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDSIVPEHISARLLKVRVIFKQRAVTTFIVGYAPTETAATCR------KSKFWKELRSTIAEVPASDHLILMIDANACTGRRGEGGGLGDVRSLGPYDRDTLNDNRSRLLACAAEHKLSIVNTVFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRFVR 657
CD I +QETRR + +I Y++ SG G K G+ GVG+A++E++ ++G + E IS RL+KVR+ + TF+VGYAPTET T K FW L + I EV + DHL++++DANA TGRR +G D + +G Y RD +N+N RLL A++++LS+ NT F TPK GG F K ++RLD+I +RQ DRRFVR
Sbjct: 209 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFIFMRQADRRFVR 423
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Match: A0A6H5JII6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII6_9PHAE) HSP 1 Score: 154 bits (390), Expect = 2.900e-41 Identity = 95/219 (43.38%), Postives = 133/219 (60.73%), Query Frame = 1
Query: 13 CDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDSIVPEHISARLLKVRVIFKQRAVTTFIVGYAPTETAATCR------KSKFWKELRSTIAEVPASDHLILMIDANACTGRRGEGGGLGDVRSLGPYDRDTLNDNRSRLLACAAEHKLSIVNTVFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRF 651
CD I +QETRR+ + +I A D I+ SG G K G+ GVG+A++E++ ++G + E IS RL+KVR+ + TF+VGYAPTET T K FW L + I EV + DHL++++DANA TGRR +G D + +G Y RD +N+N RLL A++++LS+ NT F TPK GG F K ++RLD+IL+RQ DRRF
Sbjct: 12 CDVIGLQETRREGQGSI-AHDGDVIIW-SGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGIEKYRLDFILMRQTDRRF 224
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 158 bits (399), Expect = 7.460e-41 Identity = 96/225 (42.67%), Postives = 132/225 (58.67%), Query Frame = 1
Query: 1 AKYECDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDSIVPEHISARLLKVRVIFKQRAVTTFIVGYAPTETAATCR------KSKFWKELRSTIAEVPASDHLILMIDANACTGRRGEGGGLGDVRSLGPYDRDTLNDNRSRLLACAAEHKLSIVNTVFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRFVR 657
A +CD I +QETRR + I Y++ SG G K G+ GVG+A++E++ ++G E IS RL+KVR+ + TF+VGYAPTETA K FW L + I EV + DHL++++DANA TGRR +G D + +G Y RD +N+N RLL AA+++LS++NT F TPK G + KE HR LD+IL+RQ DRR VR
Sbjct: 8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVR 226
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 158 bits (399), Expect = 7.580e-41 Identity = 96/225 (42.67%), Postives = 132/225 (58.67%), Query Frame = 1
Query: 1 AKYECDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLAVRESIARALGPDSIVPEHISARLLKVRVIFKQRAVTTFIVGYAPTETAATCR------KSKFWKELRSTIAEVPASDHLILMIDANACTGRRGEGGGLGDVRSLGPYDRDTLNDNRSRLLACAAEHKLSIVNTVFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRFVR 657
A +CD I +QETRR + I Y++ SG G K G+ GVG+A++E++ ++G E IS RL+KVR+ + TF+VGYAPTETA K FW L + I EV + DHL++++DANA TGRR +G D + +G Y RD +N+N RLL AA+++LS++NT F TPK G + KE HR LD+IL+RQ DRR VR
Sbjct: 120 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVR 338 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206676.5912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig206676.5912.1 >prot_H-elongata_contig206676.5912.1 ID=prot_H-elongata_contig206676.5912.1|Name=mRNA_H-elongata_contig206676.5912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp AKYECDFIAIQETRRDRRTTIQAPVADYIVHCSGHCDGDGGKPGILGVGLback to top mRNA from alignment at H-elongata_contig206676:37..693- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig206676.5912.1 ID=mRNA_H-elongata_contig206676.5912.1|Name=mRNA_H-elongata_contig206676.5912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=657bp|location=Sequence derived from alignment at H-elongata_contig206676:37..693- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig206676:37..693- >mRNA_H-elongata_contig206676.5912.1 ID=mRNA_H-elongata_contig206676.5912.1|Name=mRNA_H-elongata_contig206676.5912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig206676:37..693- (Himanthalia elongata Himel1 dioecious)back to top |