mRNA_H-elongata_contig20664.5911.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20664.5911.1
Unique NamemRNA_H-elongata_contig20664.5911.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20664.5911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20664contigH-elongata_contig20664:432..4789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001070.1
Exons6
Model size1511
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20664.5911.1prot_H-elongata_contig20664.5911.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20664 436..4224 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.324844-UTR-H-elongata_contig20664:431..4351622930155.324844-UTR-H-elongata_contig20664:431..435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20664 432..435 +
1691679302.2383056-UTR-H-elongata_contig20664:431..4351691679302.2383056-UTR-H-elongata_contig20664:431..435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20664 432..435 +
1622930155.443095-UTR-H-elongata_contig20664:4224..47891622930155.443095-UTR-H-elongata_contig20664:4224..4789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20664 4225..4789 +
1691679302.300602-UTR-H-elongata_contig20664:4224..47891691679302.300602-UTR-H-elongata_contig20664:4224..4789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20664 4225..4789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.339607-CDS-H-elongata_contig20664:435..5531622930155.339607-CDS-H-elongata_contig20664:435..553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 436..553 +
1691679302.2455597-CDS-H-elongata_contig20664:435..5531691679302.2455597-CDS-H-elongata_contig20664:435..553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 436..553 +
1622930155.3526025-CDS-H-elongata_contig20664:788..9011622930155.3526025-CDS-H-elongata_contig20664:788..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 789..901 +
1691679302.2529101-CDS-H-elongata_contig20664:788..9011691679302.2529101-CDS-H-elongata_contig20664:788..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 789..901 +
1622930155.3652976-CDS-H-elongata_contig20664:1085..11561622930155.3652976-CDS-H-elongata_contig20664:1085..1156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 1086..1156 +
1691679302.2671509-CDS-H-elongata_contig20664:1085..11561691679302.2671509-CDS-H-elongata_contig20664:1085..1156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 1086..1156 +
1622930155.3799076-CDS-H-elongata_contig20664:2583..28151622930155.3799076-CDS-H-elongata_contig20664:2583..2815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 2584..2815 +
1691679302.277359-CDS-H-elongata_contig20664:2583..28151691679302.277359-CDS-H-elongata_contig20664:2583..2815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 2584..2815 +
1622930155.3937383-CDS-H-elongata_contig20664:3158..33501622930155.3937383-CDS-H-elongata_contig20664:3158..3350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 3159..3350 +
1691679302.284751-CDS-H-elongata_contig20664:3158..33501691679302.284751-CDS-H-elongata_contig20664:3158..3350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 3159..3350 +
1622930155.4281163-CDS-H-elongata_contig20664:4008..42241622930155.4281163-CDS-H-elongata_contig20664:4008..4224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 4009..4224 +
1691679302.2929094-CDS-H-elongata_contig20664:4008..42241691679302.2929094-CDS-H-elongata_contig20664:4008..4224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20664 4009..4224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20664.5911.1

>prot_H-elongata_contig20664.5911.1 ID=prot_H-elongata_contig20664.5911.1|Name=mRNA_H-elongata_contig20664.5911.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=314bp
MRMDHLEGRLGEMLSQVAQDLVMVKDGLLHENEKASQRTELSGIAAPLQA
PPGEHNLEALRLESALEVFRQLGHVVKVRLQLLGVYHGFFARDNLRDVTS
RLSDDLEAIMSSSREAFSHPTIIPLSKLLDREMHVLKIALKVEGLRINMT
SVKHGAIVSSLLDFRTAQAAWKGQPQSQPPLCTKMQAIMRSVARILPHVD
QAAPNVDARNRCTTPPIREDHHKAGISKRCTTRISGGADSSKGRVGLAGA
DYAKTRISMYTFPSRLAQVTEHGGDDSQKLTNQQGEASQAITYRQNGFKI
TTAGFVYSMRRSR*
back to top

mRNA from alignment at H-elongata_contig20664:432..4789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20664.5911.1 ID=mRNA_H-elongata_contig20664.5911.1|Name=mRNA_H-elongata_contig20664.5911.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4358bp|location=Sequence derived from alignment at H-elongata_contig20664:432..4789+ (Himanthalia elongata Himel1 dioecious)
GTATATGAGGATGGACCACCTTGAAGGGAGGCTAGGTGAAATGCTGTCCC
AGGTTGCTCAAGATTTGGTGATGGTTAAAGATGGATTGCTTCACGAAAAC
GAGAAAGCTTCCCAGAGGACAGGTGATCTCAATTGTCGAATAAAGATGAG
CGAATTTCCTGATATCAAGGCAGGCAATATGGCACACACCATTCATTTTT
GTTAAAGTTGCGATGTACATATTGTTACCCATATCCGCAATACGATATGC
TCTGTATGTATTATACTAACCGCTTGTCTCCATGTCTCCCATAATCTGAC
GATGCGCCGTGCTTCTGGATTTACGGCTGATGGCGGATTTATACTTGCGT
GGTGTAGAGCTCAGTGGAATTGCGGCCCCACTTCAAGCTCCTCCGGGGGA
GCATAATCTGGAGGCTCTCAGACTGGAGTCAGCCTTAGAGGTTTTTCGTC
AGCTCGGGCATGTCGTGAAGGTATGCATAGTTTACTTCCAAAAATGTCAG
GTAAGTTTTTATTCTAGACCCGACTCACCAGATTGTCCTGCATCCATTTC
GCTAGCTGGTGTTGCTAAGTCCGGCATATGATCCATCCGGGGCGATTTTT
GCAGAAGTTCATTGTGCTTCTTGATCCTTGGTTATCATGCCTCCATCATT
ACAGGTTCGATTGCAGCTACTTGGTGTCTACCACGGATTTTTCGCGAGAG
ATAATTTACGTGATGTTACATCGAGGTATGCGGCGTGAGTCACTATTCAA
ATGTTTGTTCAGGCGACCTTAGTTGTAGTATGGCGACCGTGGTCCAAACC
CAGAAATATTGATTGTTTTCTCTTAAATGTGACTAGCCTACACCCACGGC
CTTTTGGATAAAAAGACCGCTATTATCCTCGCATGAGACGGTAATTGATG
TGCATTATACAGTACATTATATCGCAATTTCATAGGACATTTCAAGTTAA
CGTCAAAAGCGTCAAAATCACTAAAAAGCCTCAAGGAACGGTGTTGGCAA
GAGCTCGTAACATATCGATCACGCCCTCCTCGCCTTACATAGTGAGAACG
ACCTTCATCACTCGTCACTCTTCACTCGTGCTATAGGAAACCAAAGGCAA
GTACGTCCCTTTTCAACCGTAGATGATACAATAATTCGTGATAAGGCCGT
TTCTGACGAGACCGAAGAAGGTTGGATTCGGCATGAGTACTGACGGCTGA
CGGGGGGCTGCGGGACTCACCGGCGCTAACACTCCTTTACAGGGTCAAAC
GTCAAACCGGTTTGCGCGGATAATGAAAATTTGCATAAGCACGAAGGAAC
ATGGATATATACAGTATGACACTTTAGAAAACTGCGAATATGTGACCGAC
TATGTAAAAATATGTGGGCAGCAATGTTTTTTTGTCGTATCACGTGGAGG
GTTAACGCGCATTTCATATTTCACCATCGCCATTTGTTTTGTATACGTAT
TCGCTCCGGTTGGATCGAGAGACTATTATCTTGCCCACCTGTAAGCACCA
TGTCTGCGATCGTCAAACGTATGGCAATAAATTCTGTAAGAAAAGTTCGT
TTTCGCTTTCCACTCTACGAATTTTACTCCAAGAGTTGCGCTACGATCCA
CTTGGGGATTACACAACAAAGGAAGGCGTGGAGGTTGATAATATGCTTTA
CTATTTTTGCCCTTTATTTCGCCCTTCCGTTCCGAATTTCAACGAGTTGT
CGTCTGCTCATATCGGCGACATGATGCTGTTTCTACCCCAGGAGTTAATG
TGGATGGTTGCTCTGCAGTCTTAGAAATATAATAAACACGAGAATGCCCA
TAGCGAGACCTATTTTGCACTTTCACGGCTGTGAAATTTCTAGTGTAAAG
TAAAGGGAAAAATTCTAACGTAGAGCCTAAATATGTTGAAAATATCCTTC
CCTCCATCTCTGTCGTTACATTACGGCCTTACTTAGCCATAAACAACACT
GAGACGTGCTCATGGGTTCCATCTTGTGACACATAATATTTGCCGATCCG
TTAAATGGTAACGCCTCTGAAGAGCCTGTCATCTCTTGGTCTGGGCTGGC
GGCTTCTGTGAGTTTAGCGGCAATTCAAGCTCGAAATTGGGAAAATGTGT
GAATCGTGAATCATGTAATTGTGGCACCGCTCGCATGTGAAATATTCTGC
AGGTTGAGCGACGATCTTGAGGCTATAATGAGCTCCAGCAGGGAGGCATT
CAGTCACCCCACAATCATTCCTCTGTCCAAGTTACTCGACCGTGAAATGC
ACGTTTTGAAGATCGCTCTTAAAGTAGAGGGTCTGCGAATAAACATGACG
TCGGTCAAGCATGGAGCCATCGTTTCCAGTCTTCTAGACTTCCGCACCGC
ACAAGCAGCATGGAAAGGACAACCCCAAAGCCAGGTATAGAGCAGACGAG
TACATCTTCGGGCCTTTTGGCCTCGATCGTGACGATGTTATTAGTCCGTT
GATGTTCTGCTCAGTAAAGATTTTGTTAGGTCGGTGCTTTTCTCGCCCAT
TGAAGAGTATTTCATTCGTGTTTCTGATACATTCGTGTTACTGACTCTTA
CCTTGCCTTAAGTTATCTTGGCAGTTATCGTGCTTTGCGTCATCCTGCTT
TGCCTTGCCTTAGCTTTCTTTGCCATTGCAGCATTATCTTGCCTTACCTC
ACGTTCCCTGTCCTCCTAATCTTATTTACGTAGCCCGTCTTGGTAAAATA
TAACGTAATTTGTTTTCGTTGCTACAGCCCCCGTTGTGTACGAAAATGCA
GGCAATCATGAGGTCGGTAGCAAGAATACTTCCGCACGTGGATCAAGCGG
CCCCGAACGTAGACGCAAGAAATAGGTGTACGACACCACCCATTCGGGAA
GATCATCACAAGGCTGGAATTTCTAAGAGGTGTACGACACGCATATCTGG
AGGGGCAGACTCTTCGAAGGTAGGTGAAACTTCGACGACAGTTGGCCTCT
TGTTTTGCGACGTAAAGCATGTCGATTTCCTAGATTGTACCGCAGTATCA
TAAGTGGTTGTGATAAATTGAATATATACAAATACCAGTTGAATATATGC
ATATACTAGTTGACCGAGTGTACTGTACCAAAGGCAGTTCCATTCAAACT
CATACTCAGCGAATGTGTTGTCCTTGAGCGATTTGGGCACAGTCGGTGGA
GCGATGTTTCAGCGCCTTTTTTTCGAGGTGCGTGTATCGTGCTGTTGAAT
CCGTCATCGGCCTCCTGGAAGTAAACATTTTCCATTCAGAATTGTGGTCT
GAATCCAGTTGTGATCATGTACTCGACACATATCTTCAGTTTTTTGGGGC
CAAGAAATGTTTTAAACTCCCATGTGTATCCGCGCTGTTGAGCCCCCCCC
AATACCTAATCCTAAATTTGCACTGTTTAGATTTGTTGAAGAATTTCAGC
CCCTTGGGACTATTCTCGGGTAGATCGGTGGACAAGGCACATATAGTGTA
AGTTGGACATATCATGGACGACCTAGTATACTTGACACGGATATAGCAAA
GTCTACTGTTCCCTAACGGTGAGCATTTTATGCGATCCACTAATGTTATC
TGCAATGTTTTCGATATCGTACCTCAGGGGCGGGTCGGACTTGCAGGAGC
AGATTATGCTAAAACTCGTATCTCAATGTACACATTTCCTTCTCGATTGG
CTCAAGTCACGGAACACGGTGGAGATGATTCACAGAAATTGACAAATCAA
CAGGGCGAAGCTTCACAGGCGATAACGTATCGCCAGAATGGATTTAAAAT
CACCACAGCAGGATTTGTGTATTCAATGCGACGTTCCAGGTGAATTCTTT
TTTTGTAATGTTCCACGATGCCAGTCACTCCGCGTATCTTGAGCAACGTC
AGATGCCAGCGTAATGTAATGAGGCGCAACGTCCATTCGGTGTATTTATC
TACTGGGAAACGGGTAAATCGTGAATAAGTCAGTGCCACATCGAGGTCCA
CGAGTTTGATTTGCTCATAGTTATGCAATTTGCTCGATTTAGATATTCTG
ATGCTGGCCAAAAATAGTCATTGGGGATGACAGCAACAATAAGTACTCAA
AAGGGCTAGGGGGTACCTTAAGCCATATACTCCGATACTGTTTACAATGT
ATCGCACATGTCCACTCTACCCATAGTGTGTGTGGGAAAAGAGAGGCACA
CAATAATTGGTCCATGGGGTTACCTGAGGCTGCACCCGTTACTCAAGCTA
CCTTGAGGACAAATGACCTAGTGCCGGCGAACTCTCGGTGCGCCATCGGT
ACGCAAATGCGTGACGTGATGGATTCGGGAATGGCCCGATGGCGGTTGAC
GGTTGAGATAGACGCCGTCGCAGAAAACGAGAGGATCGAGAGGATTCCGG
AAATACGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20664:432..4789+

>mRNA_H-elongata_contig20664.5911.1 ID=mRNA_H-elongata_contig20664.5911.1|Name=mRNA_H-elongata_contig20664.5911.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1884bp|location=Sequence derived from alignment at H-elongata_contig20664:432..4789+ (Himanthalia elongata Himel1 dioecious)
ATGAGGATGGACCACCTTGAAGGGAGGCTAGGTGAAATGCTGTCCCAGGT
TGCTCAAGATTTGGTGATGGTTAAAGATGGATTGCTTCACGAAAACGAGA
AAGCTTCCCAGAGGACAGATGAGGATGGACCACCTTGAAGGGAGGCTAGG
TGAAATGCTGTCCCAGGTTGCTCAAGATTTGGTGATGGTTAAAGATGGAT
TGCTTCACGAAAACGAGAAAGCTTCCCAGAGGACAGAGCTCAGTGGAATT
GCGGCCCCACTTCAAGCTCCTCCGGGGGAGCATAATCTGGAGGCTCTCAG
ACTGGAGTCAGCCTTAGAGGTTTTTCGTCAGCTCGGGCATGTCGTGAAGA
GCTCAGTGGAATTGCGGCCCCACTTCAAGCTCCTCCGGGGGAGCATAATC
TGGAGGCTCTCAGACTGGAGTCAGCCTTAGAGGTTTTTCGTCAGCTCGGG
CATGTCGTGAAGGTTCGATTGCAGCTACTTGGTGTCTACCACGGATTTTT
CGCGAGAGATAATTTACGTGATGTTACATCGAGGTTCGATTGCAGCTACT
TGGTGTCTACCACGGATTTTTCGCGAGAGATAATTTACGTGATGTTACAT
CGAGGTTGAGCGACGATCTTGAGGCTATAATGAGCTCCAGCAGGGAGGCA
TTCAGTCACCCCACAATCATTCCTCTGTCCAAGTTACTCGACCGTGAAAT
GCACGTTTTGAAGATCGCTCTTAAAGTAGAGGGTCTGCGAATAAACATGA
CGTCGGTCAAGCATGGAGCCATCGTTTCCAGTCTTCTAGACTTCCGCACC
GCACAAGCAGCATGGAAAGGACAACCCCAAAGCCAGGTTGAGCGACGATC
TTGAGGCTATAATGAGCTCCAGCAGGGAGGCATTCAGTCACCCCACAATC
ATTCCTCTGTCCAAGTTACTCGACCGTGAAATGCACGTTTTGAAGATCGC
TCTTAAAGTAGAGGGTCTGCGAATAAACATGACGTCGGTCAAGCATGGAG
CCATCGTTTCCAGTCTTCTAGACTTCCGCACCGCACAAGCAGCATGGAAA
GGACAACCCCAAAGCCAGCCCCCGTTGTGTACGAAAATGCAGGCAATCAT
GAGGTCGGTAGCAAGAATACTTCCGCACGTGGATCAAGCGGCCCCGAACG
TAGACGCAAGAAATAGGTGTACGACACCACCCATTCGGGAAGATCATCAC
AAGGCTGGAATTTCTAAGAGGTGTACGACACGCATATCTGGAGGGGCAGA
CTCTTCGAAGCCCCCGTTGTGTACGAAAATGCAGGCAATCATGAGGTCGG
TAGCAAGAATACTTCCGCACGTGGATCAAGCGGCCCCGAACGTAGACGCA
AGAAATAGGTGTACGACACCACCCATTCGGGAAGATCATCACAAGGCTGG
AATTTCTAAGAGGTGTACGACACGCATATCTGGAGGGGCAGACTCTTCGA
AGGGGCGGGTCGGACTTGCAGGAGCAGATTATGCTAAAACTCGTATCTCA
ATGTACACATTTCCTTCTCGATTGGCTCAAGTCACGGAACACGGTGGAGA
TGATTCACAGAAATTGACAAATCAACAGGGCGAAGCTTCACAGGCGATAA
CGTATCGCCAGAATGGATTTAAAATCACCACAGCAGGATTTGTGTATTCA
ATGCGACGTTCCAGGTGAGGGCGGGTCGGACTTGCAGGAGCAGATTATGC
TAAAACTCGTATCTCAATGTACACATTTCCTTCTCGATTGGCTCAAGTCA
CGGAACACGGTGGAGATGATTCACAGAAATTGACAAATCAACAGGGCGAA
GCTTCACAGGCGATAACGTATCGCCAGAATGGATTTAAAATCACCACAGC
AGGATTTGTGTATTCAATGCGACGTTCCAGGTGA
back to top