mRNA_H-elongata_contig206636.5910.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206636.5910.1
Unique NamemRNA_H-elongata_contig206636.5910.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Match: A0A813A117_9DINO (ALDH12A1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A117_9DINO)

HSP 1 Score: 80.9 bits (198), Expect = 2.120e-18
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:   37 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHRSDML 156
            RTTGAPQNHWFGPAGDPRAAGIG+IEAI+LVWSCHR  ++
Sbjct:   42 RTTGAPQNHWFGPAGDPRAAGIGSIEAIQLVWSCHREVVM 81
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BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Match: C7J2F0_ORYSJ (Os05g0536400 protein (Fragment) n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=C7J2F0_ORYSJ)

HSP 1 Score: 79.0 bits (193), Expect = 1.070e-17
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   19 FRAVFRRTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHR 144
            +  +  RTTGAPQNHWFGPAGDPR AGIGT EAI+LVWSCHR
Sbjct:   31 YAGIRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHR 72
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BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Match: A0A059LCG3_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LCG3_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 1.740e-17
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   19 FRAVFRRTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHR 144
            +  +  RTTGAPQNHWFGPAGDPR AGIGT EAIRLVWSCHR
Sbjct:   92 YAGIRARTTGAPQNHWFGPAGDPRGAGIGTPEAIRLVWSCHR 133
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BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Match: A0A7J6UUN2_THATH (Delta-1-pyrroline-5-carboxylate dehydrogenase 12a1 protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6UUN2_THATH)

HSP 1 Score: 77.8 bits (190), Expect = 2.350e-17
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   37 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHR 144
            RTTGAPQNHWFGPAGDPR AGIGT EAIR VWSCHR
Sbjct:   27 RTTGAPQNHWFGPAGDPRGAGIGTPEAIRFVWSCHR 62
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BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Match: A0A1D6MB72_MAIZE (Putative aldehyde dehydrogenase MIS1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6MB72_MAIZE)

HSP 1 Score: 79.0 bits (193), Expect = 2.350e-17
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   19 FRAVFRRTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHR 144
            +  +  RTTGAPQNHWFGPAGDPR AGIGT EAI+LVWSCHR
Sbjct:   61 YAGIRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHR 102
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BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Match: A0A6H5J7Q9_9PHAE (Aldedh domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q9_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.470e-17
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:   37 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHRSDML 156
            RTTGAPQNHWFGPAGDPRAAGIGTIEAIR+VWSCHR  ++
Sbjct:  410 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHREVIM 449
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BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Match: A0A5A7QZP4_STRAF (1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QZP4_STRAF)

HSP 1 Score: 83.2 bits (204), Expect = 4.800e-17
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   37 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHRSDMLQTTLI 171
            RTTGAPQNHWFGPAGDPR AGIGT EAI+LVWSCHR  +L  TL+
Sbjct:  458 RTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVLLVLTLV 502
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BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Match: D7G0R3_ECTSI (Aldehyde Dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R3_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.840e-17
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:   37 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHRSDML 156
            RTTGAPQNHWFGPAGDPRAAGIGTIEAIR+VWSCHR  ++
Sbjct:  487 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHREVIM 526
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BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Match: C5KRN4_PERM5 (1-pyrroline-5-carboxylate dehydrogenase, putative n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KRN4_PERM5)

HSP 1 Score: 83.2 bits (204), Expect = 4.850e-17
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   19 FRAVFRRTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHRSDMLQTTLIRHVEEGCVCPVP 207
            +  V  RTTGAPQNHWFGPAGDPRAAGIG+ EAIRLVWSCHR +++Q      V EG V P P
Sbjct:  492 YAGVRARTTGAPQNHWFGPAGDPRAAGIGSPEAIRLVWSCHR-EIIQDD--GGVPEGWVRPTP 551
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BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Match: A0A835Z7L1_9STRA (Aldehyde dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.580e-17
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   37 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHRSDMLQTTLIRHVEEGCVCPVP 207
            RTTGAPQNHWFGPAGDPRAAGIGT EAIR+VWSCHR  ++       V EG   P P
Sbjct:  476 RTTGAPQNHWFGPAGDPRAAGIGTREAIRMVWSCHREIVMDE---EPVPEGWTTPPP 529
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206636.5910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813A117_9DINO2.120e-1885.00ALDH12A1 protein n=1 Tax=Symbiodinium sp. KB8 TaxI... [more]
C7J2F0_ORYSJ1.070e-1778.57Os05g0536400 protein (Fragment) n=1 Tax=Oryza sati... [more]
A0A059LCG3_9CHLO1.740e-1780.95Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
A0A7J6UUN2_THATH2.350e-1791.67Delta-1-pyrroline-5-carboxylate dehydrogenase 12a1... [more]
A0A1D6MB72_MAIZE2.350e-1778.57Putative aldehyde dehydrogenase MIS1 n=1 Tax=Zea m... [more]
A0A6H5J7Q9_9PHAE4.470e-1787.50Aldedh domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A5A7QZP4_STRAF4.800e-1780.001-pyrroline-5-carboxylate dehydrogenase n=1 Tax=St... [more]
D7G0R3_ECTSI4.840e-1787.50Aldehyde Dehydrogenase n=1 Tax=Ectocarpus siliculo... [more]
C5KRN4_PERM54.850e-1766.671-pyrroline-5-carboxylate dehydrogenase, putative ... [more]
A0A835Z7L1_9STRA6.580e-1768.42Aldehyde dehydrogenase n=1 Tax=Tribonema minus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206636contigH-elongata_contig206636:709..915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue3.1e-14
Seed eggNOG ortholog2880.D7G0R3
KEGG rclassRC00080,RC00216,RC00242,RC00255
KEGG koko:K00294
KEGG ReactionR00245,R00707,R00708,R04444,R04445,R05051
KEGG Pathwayko00250,ko00330,ko01100,map00250,map00330,map01100
GOsGO:0003674,GO:0003824,GO:0003842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006562,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009987,GO:0010133,GO:0016054,GO:0016491,GO:0016645,GO:0016646,GO:0019752,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0055114,GO:0071704,GO:0072593,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.succinate-semialdehyde dehydrogenase (NAD ) activity
EggNOG OGsCOG1012@1,KOG2451@2759
EC1.2.1.88
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.2800624-CDS-H-elongata_contig206636:708..9151622930155.2800624-CDS-H-elongata_contig206636:708..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206636 709..915 +
1691679302.228781-CDS-H-elongata_contig206636:708..9151691679302.228781-CDS-H-elongata_contig206636:708..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206636 709..915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206636.5910.1prot_H-elongata_contig206636.5910.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206636 709..915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206636.5910.1

>prot_H-elongata_contig206636.5910.1 ID=prot_H-elongata_contig206636.5910.1|Name=mRNA_H-elongata_contig206636.5910.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MSSVDFFRAVFRRTTGAPQNHWFGPAGDPRAAGIGTIEAIRLVWSCHRSD
MLQTTLIRHVEEGCVCPVP
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mRNA from alignment at H-elongata_contig206636:709..915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206636.5910.1 ID=mRNA_H-elongata_contig206636.5910.1|Name=mRNA_H-elongata_contig206636.5910.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig206636:709..915+ (Himanthalia elongata Himel1 dioecious)
ATGTCCTCCGTCGACTTTTTTCGTGCTGTTTTTCGTAGGACCACGGGTGC
TCCCCAAAACCACTGGTTCGGTCCTGCTGGCGACCCCAGGGCTGCGGGGA
TCGGCACCATCGAGGCGATCCGCTTGGTGTGGTCATGTCACAGGTCAGAC
ATGCTACAAACAACTCTGATCAGACATGTCGAAGAAGGATGTGTGTGTCC
CGTCCCT
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Coding sequence (CDS) from alignment at H-elongata_contig206636:709..915+

>mRNA_H-elongata_contig206636.5910.1 ID=mRNA_H-elongata_contig206636.5910.1|Name=mRNA_H-elongata_contig206636.5910.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig206636:709..915+ (Himanthalia elongata Himel1 dioecious)
ATGTCCTCCGTCGACTTTTTTCGTGCTGTTTTTCGTAGGACCACGGGTGC
TCCCCAAAACCACTGGTTCGGTCCTGCTGGCGACCCCAGGGCTGCGGGGA
TCGGCACCATCGAGGCGATCCGCTTGGTGTGGTCATGTCACAGGTCAGAC
ATGCTACAAACAACTCTGATCAGACATGTCGAAGAAGGATGTGTGTGTCC
CGTCCCTATGTCCTCCGTCGACTTTTTTCGTGCTGTTTTTCGTAGGACCA
CGGGTGCTCCCCAAAACCACTGGTTCGGTCCTGCTGGCGACCCCAGGGCT
GCGGGGATCGGCACCATCGAGGCGATCCGCTTGGTGTGGTCATGTCACAG
GTCAGACATGCTACAAACAACTCTGATCAGACATGTCGAAGAAGGATGTG
TGTGTCCCGTCCCT
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