mRNA_H-elongata_contig206531.5908.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE) HSP 1 Score: 171 bits (434), Expect = 1.430e-47 Identity = 96/180 (53.33%), Postives = 119/180 (66.11%), Query Frame = 1
Query: 7 TAADTQNFQEVKGAFEVLSDPQKRADYDLAGTT---LPTDPSAMSQKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAWM 537
T D NFQ++K A++VLSDP KR YD G T + DP A +++ FL M ++R LV+ +LL V A LLWPILF AK+DGD S+SWV +W+PLWI D LGLWYF + LG I +P ME D PLPLRVLALVKW LL +FQVFLT+ LD I + V+ +PLLAWM
Sbjct: 61 TEQDRANFQKMKSAYDVLSDPSKRELYDQLGETGMLMMEDPFAAKDNMIKNFLRMGTRDRLRLVVFVLLFVGAVLLWPILFCAKVDGDTSASWVALWTPLWIYDALGLWYFMYLISLGQIKAPEG-MEEGWTDPFPLPLRVLALVKWTLLFLFQVFLTMQLDGDIDWSYAVVGSPLLAWM 239
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: D8LBY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY5_ECTSI) HSP 1 Score: 107 bits (267), Expect = 1.550e-24 Identity = 59/135 (43.70%), Postives = 89/135 (65.93%), Query Frame = 1
Query: 130 SQKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAW 534
++ ++ FL ++ A +VL ++L+V+ +LLWPILFS ++DG S SW +W+PLWI DG+GL +F + G I PA+ + + D P+ +RVLALVKW LL++FQV L L LD I + ++APL+AW
Sbjct: 35 TESLLNGFLKRRKRDIALVVLTVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWITDGIGLMFFVFIVSWGPI-KAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVLLVLRLDRHISWSWEEVLAPLMAW 168
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A6H5JKW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW2_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 5.710e-14 Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 271 SWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAW 534
SW +W+PLWI D +GL +F LV PA+ + + D P+ +RVLALVKW LL++FQV L L LDH I + ++APL+AW
Sbjct: 2 SWAAVWTPLWIADSIGLMFF-VFLVSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVLLVLRLDHHISWSWEEVLAPLMAW 88
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A1Z5J9C0_FISSO (J domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9C0_FISSO) HSP 1 Score: 77.8 bits (190), Expect = 1.950e-13 Identity = 54/182 (29.67%), Postives = 93/182 (51.10%), Query Frame = 1
Query: 1 TFTAADTQNFQEVKGAFEVLSDPQKRADYDLAGTT---LPTDPSAMS-QKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAW 534
T T F +K A+E LSDP KR YD G +P ++ Q++ F S+ +R + L+ +L A L+ PIL +D W+ PLW+ +GL ++Y+ ++LG I P + E + +D P+ R+++LV +LL+ F+ + L +D+ I VL +P++ +
Sbjct: 63 TITPELQAQFTRMKEAYETLSDPYKRETYDAIGERGLKWTEEPFSIDPQELAHNFATSSVYDRMKIFLIFVLAAVAVLILPILICWHVDHGDRGLWLATLIPLWLWNGLIIFYYSRLILLGPITRPDSIPEAEWVDPFPMEKRIMSLVNHLLLVAFEFLIALKVDNLIAAPWSVLFSPVIVF 244
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A1Z5K6R4_FISSO (J domain-containing protein (Fragment) n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6R4_FISSO) HSP 1 Score: 74.3 bits (181), Expect = 2.600e-12 Identity = 54/182 (29.67%), Postives = 90/182 (49.45%), Query Frame = 1
Query: 1 TFTAADTQNFQEVKGAFEVLSDPQKRADYDLAGTT---LPTDPSAMS-QKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAW 534
T T F +K A+E L DP KR YD G +P ++ Q++ F S+ +R + L+ +L A L+ PIL +D W+ PLW+ +GL ++Y+ ++LG I P + E + +D P+ R+++LV +LL+ F+ + L LD I VL P++ +
Sbjct: 63 TITPELQAQFTRMKEAYETLIDPYKRETYDAIGERGLKWTEEPFSIDPQELAHNFATSSVYDRMKIFLIFVLAAVAVLILPILICWHVDHGDRGLWLATLIPLWLWNGLIIFYYSRLILLGPITRPDSIPEAEWVDPLPMEKRIMSLVNHLLLVAFEFLIALKLDDLIAAPWSVLFFPVVVF 244
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A8H7ER49_9FUNG (J domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ER49_9FUNG) HSP 1 Score: 61.2 bits (147), Expect = 9.390e-8 Identity = 57/195 (29.23%), Postives = 85/195 (43.59%), Query Frame = 1
Query: 22 QNFQEVKGAFEVLSDPQKRADYDLAGTT----LPTDPSAMSQKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNP---------------------LPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLA 531
+ F+ + A+EVLSD QKR YD G + T S +E+ L ++ L+ VVA +++ + ++D SW V+W PLWIID + + + H VL + S L R+L LV WVLL++FQVF+ L LD K+ + V+ AP A
Sbjct: 44 EQFKNISHAYEVLSDEQKRRVYDRYGELGLQMMGTVASPFFDPEIESML-------CTMMTLISFVVALLIIFFAFLTVRIDEITQWSWAVVWIPLWIIDAICCYAAFQH-VLKAVNSKDXXXXXXXXXXXXXXXXXXXXXSEQLRATRRRVRLFRRLLYLVYWVLLLLFQVFIVLRLDDKVTWSATVIFAPYFA 230
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A2R5H1F3_9STRA (DnaJ protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H1F3_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 6.900e-6 Identity = 49/185 (26.49%), Postives = 91/185 (49.19%), Query Frame = 1
Query: 22 QNFQEVKGAFEVLSDPQKRADYDLAGTTLPTDPSAMSQKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAK---LDGDISS---SWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMD--------FNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAW 534
++FQ +K A++V+SDP KR YD G + M ++ ++R LV + V LL+PIL S + L+G S +W V + PLW+++ L F + + + ++++D+ FN L R+ +K L+++F++FL L LD + + V++ P++ +
Sbjct: 47 EDFQNMKNAYDVISDPNKRKMYDRYGPDVVKMMDGEMTNSMAFVANLRKRDRFMLVFAISFVSFILLLFPILLSIRWDALEGGSDSKPYAWAVAFIPLWVLEVLVTVIFAEQVRQEPLDKSDPEVDDDVRAMWNENERVFNRL--RIEFGIKMGLVLIFEIFLVLQLDEVVDWSWYVVLLPMMLY 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig206531.5908.1 >prot_H-elongata_contig206531.5908.1 ID=prot_H-elongata_contig206531.5908.1|Name=mRNA_H-elongata_contig206531.5908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=183bp TFTAADTQNFQEVKGAFEVLSDPQKRADYDLAGTTLPTDPSAMSQKIMETback to top mRNA from alignment at H-elongata_contig206531:495..1043- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig206531.5908.1 ID=mRNA_H-elongata_contig206531.5908.1|Name=mRNA_H-elongata_contig206531.5908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=549bp|location=Sequence derived from alignment at H-elongata_contig206531:495..1043- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig206531:495..1043- >mRNA_H-elongata_contig206531.5908.1 ID=mRNA_H-elongata_contig206531.5908.1|Name=mRNA_H-elongata_contig206531.5908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1098bp|location=Sequence derived from alignment at H-elongata_contig206531:495..1043- (Himanthalia elongata Himel1 dioecious)back to top |