mRNA_H-elongata_contig206531.5908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206531.5908.1
Unique NamemRNA_H-elongata_contig206531.5908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.430e-47
Identity = 96/180 (53.33%), Postives = 119/180 (66.11%), Query Frame = 1
Query:    7 TAADTQNFQEVKGAFEVLSDPQKRADYDLAGTT---LPTDPSAMSQKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAWM 537
            T  D  NFQ++K A++VLSDP KR  YD  G T   +  DP A    +++ FL M  ++R  LV+ +LL V A LLWPILF AK+DGD S+SWV +W+PLWI D LGLWYF   + LG I +P   ME    D  PLPLRVLALVKW LL +FQVFLT+ LD  I  +  V+ +PLLAWM
Sbjct:   61 TEQDRANFQKMKSAYDVLSDPSKRELYDQLGETGMLMMEDPFAAKDNMIKNFLRMGTRDRLRLVVFVLLFVGAVLLWPILFCAKVDGDTSASWVALWTPLWIYDALGLWYFMYLISLGQIKAPEG-MEEGWTDPFPLPLRVLALVKWTLLFLFQVFLTMQLDGDIDWSYAVVGSPLLAWM 239          
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: D8LBY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY5_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.550e-24
Identity = 59/135 (43.70%), Postives = 89/135 (65.93%), Query Frame = 1
Query:  130 SQKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAW 534
            ++ ++  FL    ++ A +VL ++L+V+ +LLWPILFS ++DG  S SW  +W+PLWI DG+GL +F   +  G I   PA+ + +  D  P+ +RVLALVKW LL++FQV L L LD  I  +   ++APL+AW
Sbjct:   35 TESLLNGFLKRRKRDIALVVLTVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWITDGIGLMFFVFIVSWGPI-KAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVLLVLRLDRHISWSWEEVLAPLMAW 168          
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A6H5JKW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.710e-14
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  271 SWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAW 534
            SW  +W+PLWI D +GL +F   LV       PA+ + +  D  P+ +RVLALVKW LL++FQV L L LDH I  +   ++APL+AW
Sbjct:    2 SWAAVWTPLWIADSIGLMFF-VFLVSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVLLVLRLDHHISWSWEEVLAPLMAW 88          
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A1Z5J9C0_FISSO (J domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9C0_FISSO)

HSP 1 Score: 77.8 bits (190), Expect = 1.950e-13
Identity = 54/182 (29.67%), Postives = 93/182 (51.10%), Query Frame = 1
Query:    1 TFTAADTQNFQEVKGAFEVLSDPQKRADYDLAGTT---LPTDPSAMS-QKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAW 534
            T T      F  +K A+E LSDP KR  YD  G        +P ++  Q++   F   S+ +R  + L+ +L   A L+ PIL    +D      W+    PLW+ +GL ++Y+   ++LG I  P +  E + +D  P+  R+++LV  +LL+ F+  + L +D+ I     VL +P++ +
Sbjct:   63 TITPELQAQFTRMKEAYETLSDPYKRETYDAIGERGLKWTEEPFSIDPQELAHNFATSSVYDRMKIFLIFVLAAVAVLILPILICWHVDHGDRGLWLATLIPLWLWNGLIIFYYSRLILLGPITRPDSIPEAEWVDPFPMEKRIMSLVNHLLLVAFEFLIALKVDNLIAAPWSVLFSPVIVF 244          
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A1Z5K6R4_FISSO (J domain-containing protein (Fragment) n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6R4_FISSO)

HSP 1 Score: 74.3 bits (181), Expect = 2.600e-12
Identity = 54/182 (29.67%), Postives = 90/182 (49.45%), Query Frame = 1
Query:    1 TFTAADTQNFQEVKGAFEVLSDPQKRADYDLAGTT---LPTDPSAMS-QKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAW 534
            T T      F  +K A+E L DP KR  YD  G        +P ++  Q++   F   S+ +R  + L+ +L   A L+ PIL    +D      W+    PLW+ +GL ++Y+   ++LG I  P +  E + +D  P+  R+++LV  +LL+ F+  + L LD  I     VL  P++ +
Sbjct:   63 TITPELQAQFTRMKEAYETLIDPYKRETYDAIGERGLKWTEEPFSIDPQELAHNFATSSVYDRMKIFLIFVLAAVAVLILPILICWHVDHGDRGLWLATLIPLWLWNGLIIFYYSRLILLGPITRPDSIPEAEWVDPLPMEKRIMSLVNHLLLVAFEFLIALKLDDLIAAPWSVLFFPVVVF 244          
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A8H7ER49_9FUNG (J domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ER49_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 9.390e-8
Identity = 57/195 (29.23%), Postives = 85/195 (43.59%), Query Frame = 1
Query:   22 QNFQEVKGAFEVLSDPQKRADYDLAGTT----LPTDPSAMSQKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNP---------------------LPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLA 531
            + F+ +  A+EVLSD QKR  YD  G      + T  S      +E+ L         ++ L+  VVA  +++    + ++D     SW V+W PLWIID +  +  + H VL  + S                                   L  R+L LV WVLL++FQVF+ L LD K+  +  V+ AP  A
Sbjct:   44 EQFKNISHAYEVLSDEQKRRVYDRYGELGLQMMGTVASPFFDPEIESML-------CTMMTLISFVVALLIIFFAFLTVRIDEITQWSWAVVWIPLWIIDAICCYAAFQH-VLKAVNSKDXXXXXXXXXXXXXXXXXXXXXSEQLRATRRRVRLFRRLLYLVYWVLLLLFQVFIVLRLDDKVTWSATVIFAPYFA 230          
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Match: A0A2R5H1F3_9STRA (DnaJ protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H1F3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.900e-6
Identity = 49/185 (26.49%), Postives = 91/185 (49.19%), Query Frame = 1
Query:   22 QNFQEVKGAFEVLSDPQKRADYDLAGTTLPTDPSAMSQKIMETFLHMSLQERANLVLLMLLVVAAALLWPILFSAK---LDGDISS---SWVVIWSPLWIIDGLGLWYFWDHLVLGNIFSPPAQMENDMMD--------FNPLPLRVLALVKWVLLIVFQVFLTLTLDHKIKLANIVLMAPLLAW 534
            ++FQ +K A++V+SDP KR  YD  G  +           M    ++  ++R  LV  +  V    LL+PIL S +   L+G   S   +W V + PLW+++ L    F + +    +     ++++D+          FN L  R+   +K  L+++F++FL L LD  +  +  V++ P++ +
Sbjct:   47 EDFQNMKNAYDVISDPNKRKMYDRYGPDVVKMMDGEMTNSMAFVANLRKRDRFMLVFAISFVSFILLLFPILLSIRWDALEGGSDSKPYAWAVAFIPLWVLEVLVTVIFAEQVRQEPLDKSDPEVDDDVRAMWNENERVFNRL--RIEFGIKMGLVLIFEIFLVLQLDEVVDWSWYVVLLPMMLY 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206531.5908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K446_9PHAE1.430e-4753.33J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
D8LBY5_ECTSI1.550e-2443.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKW2_9PHAE5.710e-1446.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z5J9C0_FISSO1.950e-1329.67J domain-containing protein n=1 Tax=Fistulifera so... [more]
A0A1Z5K6R4_FISSO2.600e-1229.67J domain-containing protein (Fragment) n=1 Tax=Fis... [more]
A0A8H7ER49_9FUNG9.390e-829.23J domain-containing protein n=1 Tax=Apophysomyces ... [more]
A0A2R5H1F3_9STRA6.900e-626.49DnaJ protein-like n=1 Tax=Hondaea fermentalgiana T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206531contigH-elongata_contig206531:495..1043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue7.9e-41
Seed eggNOG ortholog2880.D7G6F0
KEGG koko:K10752
KEGG Pathwayko04218,map04218
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.1135697-CDS-H-elongata_contig206531:494..10431622930155.1135697-CDS-H-elongata_contig206531:494..1043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206531 495..1043 -
1691679302.1742005-CDS-H-elongata_contig206531:494..10431691679302.1742005-CDS-H-elongata_contig206531:494..1043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206531 495..1043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206531.5908.1prot_H-elongata_contig206531.5908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206531 495..1043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206531.5908.1

>prot_H-elongata_contig206531.5908.1 ID=prot_H-elongata_contig206531.5908.1|Name=mRNA_H-elongata_contig206531.5908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=183bp
TFTAADTQNFQEVKGAFEVLSDPQKRADYDLAGTTLPTDPSAMSQKIMET
FLHMSLQERANLVLLMLLVVAAALLWPILFSAKLDGDISSSWVVIWSPLW
IIDGLGLWYFWDHLVLGNIFSPPAQMENDMMDFNPLPLRVLALVKWVLLI
VFQVFLTLTLDHKIKLANIVLMAPLLAWMVVTL
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mRNA from alignment at H-elongata_contig206531:495..1043-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206531.5908.1 ID=mRNA_H-elongata_contig206531.5908.1|Name=mRNA_H-elongata_contig206531.5908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=549bp|location=Sequence derived from alignment at H-elongata_contig206531:495..1043- (Himanthalia elongata Himel1 dioecious)
ACGTTCACCGCGGCAGATACCCAAAATTTTCAAGAAGTCAAGGGTGCATT TGAGGTCCTGTCAGACCCTCAGAAGAGGGCCGACTACGACCTCGCCGGTA CCACGCTCCCCACCGACCCGTCCGCTATGTCCCAAAAAATAATGGAGACT TTTCTGCACATGAGCCTGCAAGAGAGGGCAAACCTCGTGCTTCTCATGCT TCTTGTCGTGGCCGCTGCACTGCTGTGGCCGATCCTGTTCTCGGCAAAGC TGGATGGGGACATTTCTTCCTCGTGGGTGGTGATCTGGTCACCTCTTTGG ATAATCGATGGCTTAGGCCTGTGGTATTTCTGGGACCATCTGGTCCTGGG AAATATCTTCTCTCCCCCGGCTCAAATGGAAAACGATATGATGGATTTCA ATCCACTTCCCCTCAGGGTGCTTGCCCTCGTGAAGTGGGTGCTGCTCATC GTATTCCAGGTGTTTCTAACGCTGACCTTGGACCACAAAATAAAGTTGGC TAACATCGTTCTCATGGCGCCACTGCTGGCTTGGATGGTGGTGACGCTT
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Coding sequence (CDS) from alignment at H-elongata_contig206531:495..1043-

>mRNA_H-elongata_contig206531.5908.1 ID=mRNA_H-elongata_contig206531.5908.1|Name=mRNA_H-elongata_contig206531.5908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1098bp|location=Sequence derived from alignment at H-elongata_contig206531:495..1043- (Himanthalia elongata Himel1 dioecious)
ACGTTCACCGCGGCAGATACCCAAAATTTTCAAGAAGTCAAGGGTGCATT
TGAGGTCCTGTCAGACCCTCAGAAGAGGGCCGACTACGACCTCGCCGGTA
CCACGCTCCCCACCGACCCGTCCGCTATGTCCCAAAAAATAATGGAGACT
TTTCTGCACATGAGCCTGCAAGAGAGGGCAAACCTCGTGCTTCTCATGCT
TCTTGTCGTGGCCGCTGCACTGCTGTGGCCGATCCTGTTCTCGGCAAAGC
TGGATGGGGACATTTCTTCCTCGTGGGTGGTGATCTGGTCACCTCTTTGG
ATAATCGATGGCTTAGGCCTGTGGTATTTCTGGGACCATCTGGTCCTGGG
AAATATCTTCTCTCCCCCGGCTCAAATGGAAAACGATATGATGGATTTCA
ATCCACTTCCCCTCAGGGTGCTTGCCCTCGTGAAGTGGGTGCTGCTCATC
GTATTCCAGGTGTTTCTAACGCTGACCTTGGACCACAAAATAAAGTTGGC
TAACATCGTTCTCATGGCGCCACTGCTGGCTTGGATGGTGGTGACGCTTA
CGTTCACCGCGGCAGATACCCAAAATTTTCAAGAAGTCAAGGGTGCATTT
GAGGTCCTGTCAGACCCTCAGAAGAGGGCCGACTACGACCTCGCCGGTAC
CACGCTCCCCACCGACCCGTCCGCTATGTCCCAAAAAATAATGGAGACTT
TTCTGCACATGAGCCTGCAAGAGAGGGCAAACCTCGTGCTTCTCATGCTT
CTTGTCGTGGCCGCTGCACTGCTGTGGCCGATCCTGTTCTCGGCAAAGCT
GGATGGGGACATTTCTTCCTCGTGGGTGGTGATCTGGTCACCTCTTTGGA
TAATCGATGGCTTAGGCCTGTGGTATTTCTGGGACCATCTGGTCCTGGGA
AATATCTTCTCTCCCCCGGCTCAAATGGAAAACGATATGATGGATTTCAA
TCCACTTCCCCTCAGGGTGCTTGCCCTCGTGAAGTGGGTGCTGCTCATCG
TATTCCAGGTGTTTCTAACGCTGACCTTGGACCACAAAATAAAGTTGGCT
AACATCGTTCTCATGGCGCCACTGCTGGCTTGGATGGTGGTGACGCTT
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